Wall clock time and date at job start Mon Mar 30 2020 07:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47105 * 2 1 4 4 C 1.53000 * 109.47001 * 119.99763 * 2 1 3 5 5 C 1.50700 * 109.47344 * 299.99922 * 4 2 1 6 6 H 1.07997 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99693 * 180.02562 * 5 4 2 8 8 N 1.31504 * 120.00272 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99591 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47132 * 269.99868 * 9 7 5 11 11 H 1.48497 * 109.47009 * 29.99912 * 9 7 5 12 12 H 1.48501 * 109.46998 * 149.99968 * 9 7 5 13 13 C 1.52996 * 109.47006 * 239.99618 * 2 1 3 14 14 N 1.46506 * 109.47041 * 60.00084 * 13 2 1 15 15 C 1.34774 * 119.99911 * 179.97438 * 14 13 2 16 16 O 1.21281 * 120.00451 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99788 * 180.02562 * 15 14 13 18 18 H 1.09002 * 112.85055 * 78.45505 * 17 15 14 19 19 C 1.53781 * 113.61434 * 307.25904 * 17 15 14 20 20 C 1.53956 * 87.01952 * 220.04739 * 19 17 15 21 21 C 1.53779 * 87.11091 * 25.36221 * 20 19 17 22 22 C 1.53003 * 113.61368 * 220.08863 * 21 20 19 23 23 C 1.53003 * 113.61683 * 89.18640 * 21 20 19 24 24 H 1.09002 * 109.47235 * 300.00123 * 1 2 3 25 25 H 1.08999 * 109.47608 * 60.00500 * 1 2 3 26 26 H 1.09004 * 109.46975 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47140 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47204 * 300.00027 * 3 2 1 29 29 H 1.09002 * 109.47175 * 59.99840 * 3 2 1 30 30 H 1.09001 * 109.46813 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47196 * 60.00209 * 4 2 1 32 32 H 0.97000 * 120.00127 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47158 * 179.97438 * 13 2 1 34 34 H 1.08993 * 109.47547 * 300.00450 * 13 2 1 35 35 H 0.97005 * 119.99918 * 0.02562 * 14 13 2 36 36 H 1.09001 * 113.61406 * 334.56648 * 19 17 15 37 37 H 1.08996 * 113.61858 * 105.47474 * 19 17 15 38 38 H 1.08997 * 113.54018 * 270.81219 * 20 19 17 39 39 H 1.09002 * 113.74492 * 139.94068 * 20 19 17 40 40 H 1.09003 * 109.46645 * 157.49798 * 22 21 20 41 41 H 1.08994 * 109.47532 * 277.49647 * 22 21 20 42 42 H 1.08997 * 109.46963 * 37.49692 * 22 21 20 43 43 H 1.08997 * 109.47258 * 308.86888 * 23 21 20 44 44 H 1.09002 * 109.46935 * 68.86510 * 23 21 20 45 45 H 1.08997 * 109.47036 * 188.86073 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9165 0.8671 2.3806 7 6 1.8712 -0.4816 3.7320 8 7 2.6272 -1.5508 3.8526 9 14 1.2480 0.3987 5.2572 10 1 2.2254 1.4411 5.6613 11 1 -0.0606 1.0352 4.9613 12 1 1.0838 -0.5806 6.3615 13 6 2.0400 -0.7213 -1.2492 14 7 1.5516 -0.0307 -2.4454 15 6 1.8776 -0.4910 -3.6695 16 8 2.5756 -1.4765 -3.7808 17 6 1.3757 0.2197 -4.8999 18 1 1.9435 1.1215 -5.1291 19 6 -0.1474 0.4315 -4.9108 20 6 -0.1040 0.0848 -6.4102 21 6 1.1788 -0.7084 -6.1102 22 6 2.2593 -0.5548 -7.1825 23 6 0.9220 -2.1675 -5.7281 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7216 1.2490 31 1 1.6766 -1.7489 1.2493 32 1 2.8616 -1.8822 4.7336 33 1 3.1300 -0.7209 -1.2494 34 1 1.6766 -1.7489 -1.2492 35 1 0.9942 0.7582 -2.3564 36 1 -0.6936 -0.2958 -4.3102 37 1 -0.4468 1.4597 -4.7081 38 1 0.0580 0.9503 -7.0526 39 1 -0.9352 -0.5381 -6.7410 40 1 3.2339 -0.7844 -6.7517 41 1 2.0550 -1.2403 -8.0049 42 1 2.2587 0.4696 -7.5548 43 1 0.1765 -2.2094 -4.9340 44 1 0.5564 -2.7121 -6.5987 45 1 1.8501 -2.6205 -5.3796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597656646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:05 Heat of formation + Delta-G solvation = -67.161972 kcal Electronic energy + Delta-G solvation = -21257.995779 eV Core-core repulsion = 18274.212832 eV Total energy + Delta-G solvation = -2983.782947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.71743 -39.56136 -38.21718 -35.23363 -33.94168 -31.54773 -29.25443 -28.46988 -28.31413 -27.96551 -26.69835 -24.69440 -23.44189 -21.59675 -20.08848 -19.11622 -18.37683 -17.93086 -16.85789 -16.51645 -16.42149 -15.80063 -15.36541 -15.23851 -14.81744 -14.66749 -14.36171 -14.05549 -14.00621 -13.94276 -13.56825 -13.12741 -12.88309 -12.78273 -12.73283 -12.59306 -12.43521 -12.34160 -12.23417 -12.16851 -11.98207 -11.73126 -11.53579 -11.26791 -11.10653 -10.95088 -10.86713 -10.52049 -10.38382 -9.97138 -8.14406 -6.22590 1.42448 1.43001 1.53428 1.74656 2.31199 2.45680 3.20027 3.44786 3.60847 3.77140 3.86600 3.97329 4.08040 4.21288 4.23366 4.33849 4.60168 4.69112 4.71365 4.72023 4.80104 4.81737 4.86748 4.95435 4.96276 5.01383 5.07158 5.10910 5.11924 5.15801 5.27112 5.31927 5.41700 5.48838 5.49191 5.53079 5.54915 5.59345 5.63091 5.79654 5.89322 6.29810 6.68078 6.92813 7.37390 7.45429 8.98254 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042628 B = 0.003689 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.694976 B = 7587.302035 C = 7823.150322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.258 1.258 12 H -0.290 1.290 13 C 0.142 3.858 14 N -0.710 5.710 15 C 0.512 3.488 16 O -0.585 6.585 17 C -0.129 4.129 18 H 0.136 0.864 19 C -0.127 4.127 20 C -0.119 4.119 21 C -0.070 4.070 22 C -0.133 4.133 23 C -0.129 4.129 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.056 0.944 30 H -0.016 1.016 31 H -0.016 1.016 32 H 0.260 0.740 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.065 0.935 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 8.169 -21.153 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.182 1.182 12 H -0.216 1.216 13 C 0.018 3.982 14 N -0.362 5.362 15 C 0.301 3.699 16 O -0.465 6.465 17 C -0.150 4.150 18 H 0.153 0.847 19 C -0.164 4.164 20 C -0.157 4.157 21 C -0.070 4.070 22 C -0.190 4.190 23 C -0.186 4.186 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.828 7.370 -21.097 23.367 hybrid contribution 0.206 -0.157 1.573 1.594 sum -6.622 7.212 -19.524 21.842 Atomic orbital electron populations 1.21681 0.93518 1.00861 1.01684 1.20701 0.96749 0.96308 0.92736 1.21688 0.99819 0.94606 1.01706 1.18972 0.94151 0.94141 0.92503 1.21598 1.30436 1.12109 0.91035 0.90823 1.25968 0.95660 0.95841 1.02795 1.70124 1.38849 1.25004 1.24106 0.85526 0.79234 0.78096 0.78678 1.20122 1.18215 1.21601 1.21150 0.97475 0.95236 0.84366 1.46053 1.53351 1.31992 1.04837 1.21267 0.79188 0.84159 0.85333 1.90642 1.39963 1.28552 1.87336 1.23083 0.99398 1.00666 0.91863 0.84675 1.22924 0.92015 1.03567 0.97905 1.23028 0.96383 1.00238 0.96002 1.21732 0.97164 0.94138 0.93970 1.21711 0.97145 1.02636 0.97527 1.21644 1.01201 0.95258 1.00543 0.92544 0.91057 0.94616 0.94585 0.91081 0.92484 0.99794 0.99787 0.93175 0.94068 0.94100 0.75052 0.90685 0.88164 0.87710 0.90532 0.94234 0.91862 0.90659 0.94111 0.91564 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 2 C -0.06 -2.46 0.54 -52.18 -0.03 -2.48 16 3 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -27.65 7.65 25.60 0.20 -27.46 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.67 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 9 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 13 C 0.14 5.20 4.56 86.38 0.39 5.59 16 14 N -0.71 -19.67 4.88 -463.06 -2.26 -21.93 16 15 C 0.51 14.70 6.61 87.66 0.58 15.28 16 16 O -0.58 -22.13 14.19 -3.03 -0.04 -22.18 16 17 C -0.13 -2.45 3.67 -11.01 -0.04 -2.49 16 18 H 0.14 2.04 8.10 -2.39 -0.02 2.02 16 19 C -0.13 -1.77 7.04 31.18 0.22 -1.55 16 20 C -0.12 -1.48 7.23 31.18 0.23 -1.25 16 21 C -0.07 -1.28 1.19 -51.65 -0.06 -1.34 16 22 C -0.13 -2.21 9.19 71.98 0.66 -1.55 16 23 C -0.13 -3.02 7.76 71.98 0.56 -2.46 16 24 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 25 H 0.07 1.78 6.86 -2.39 -0.02 1.77 16 26 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.78 6.86 -2.39 -0.02 1.77 16 29 H 0.06 2.04 6.62 -2.39 -0.02 2.02 16 30 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H -0.02 -0.94 8.14 -2.38 -0.02 -0.95 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.41 8.85 5.98 -92.70 -0.55 8.30 16 36 H 0.07 1.25 7.56 -2.39 -0.02 1.23 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 0.89 7.96 -2.39 -0.02 0.88 16 39 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.92 7.94 -2.39 -0.02 0.90 16 43 H 0.04 1.00 7.17 -2.39 -0.02 0.98 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.50 6.36 -2.39 -0.02 1.48 16 Total: -1.00 -69.21 345.78 4.85 -64.37 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.39 Total: 15.76 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 4.45 Total: -24.35 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.98 Total: -79.25 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.04 Total: -22.18 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -69.21 4.85 -64.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597656646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.796 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds