Wall clock time and date at job start Mon Mar 30 2020 07:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.05462 * 2 1 4 4 C 1.54263 * 110.03197 * 238.58090 * 2 1 3 5 5 C 1.54885 * 104.19749 * 217.10610 * 4 2 1 6 6 C 1.54891 * 102.74706 * 37.94292 * 5 4 2 7 7 C 1.53876 * 110.02863 * 121.41724 * 2 1 3 8 8 H 1.09005 * 110.06728 * 238.59171 * 7 2 1 9 9 C 1.53001 * 110.03495 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46886 * 183.62072 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47084 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47084 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99751 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99788 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47116 * 59.99931 * 20 18 16 22 22 H 1.48505 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47061 * 299.99705 * 20 18 16 24 24 H 1.09003 * 109.47262 * 298.58451 * 1 2 3 25 25 H 1.09001 * 109.47300 * 58.58448 * 1 2 3 26 26 H 1.09009 * 109.47031 * 178.58594 * 1 2 3 27 27 H 1.09000 * 109.47428 * 181.41614 * 3 2 1 28 28 H 1.08999 * 109.47259 * 301.41862 * 3 2 1 29 29 H 1.08997 * 109.47590 * 61.41586 * 3 2 1 30 30 H 1.09001 * 110.48721 * 98.42672 * 4 2 1 31 31 H 1.09003 * 110.60345 * 335.84097 * 4 2 1 32 32 H 1.09003 * 110.75337 * 279.63217 * 5 4 2 33 33 H 1.08993 * 110.91971 * 156.33226 * 5 4 2 34 34 H 1.09003 * 110.48803 * 203.38076 * 6 5 4 35 35 H 1.08999 * 110.59989 * 80.79720 * 6 5 4 36 36 H 1.09001 * 109.46652 * 63.62417 * 9 7 2 37 37 H 1.08992 * 109.47514 * 303.62506 * 9 7 2 38 38 H 1.09002 * 109.47398 * 300.00496 * 10 9 7 39 39 H 1.09001 * 109.47194 * 60.00677 * 10 9 7 40 40 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 41 41 H 1.09002 * 109.47152 * 300.00160 * 14 12 11 42 42 H 1.09001 * 109.46980 * 60.00059 * 14 12 11 43 43 H 1.09002 * 109.47045 * 299.99967 * 15 14 12 44 44 H 1.09001 * 109.47375 * 60.00042 * 15 14 12 45 45 H 0.97000 * 120.00354 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3136 -1.5008 -0.7191 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7536 1.2338 8 1 2.6864 -0.0958 1.8332 9 6 0.8861 -1.2664 2.0745 10 6 1.4225 -1.9341 3.3423 11 7 0.3013 -2.4256 4.1470 12 6 0.5353 -3.0530 5.3167 13 8 1.6741 -3.2111 5.7027 14 6 -0.6180 -3.5592 6.1442 15 6 -0.0817 -4.2256 7.4127 16 6 -1.2350 -4.7323 8.2399 17 1 -2.2490 -4.5926 7.8955 18 6 -0.9956 -5.3743 9.4364 19 7 0.2392 -5.5449 9.8555 20 14 -2.4251 -6.0030 10.4614 21 1 -3.2023 -6.9924 9.6727 22 1 -1.9046 -6.6498 11.6927 23 1 -3.3047 -4.8660 10.8341 24 1 -0.3634 0.4917 0.9024 25 1 -0.3634 0.5357 -0.8770 26 1 -0.3633 -1.0274 -0.0254 27 1 3.1443 1.4262 -0.0254 28 1 1.6761 1.9622 -0.8770 29 1 1.7174 1.9471 0.9024 30 1 2.3297 -0.0537 -2.0255 31 1 1.3152 -1.4660 -1.5988 32 1 4.1710 -0.8290 -0.6751 33 1 3.5357 -2.3678 -1.3412 34 1 3.7637 -2.1037 1.3311 35 1 2.2778 -2.8431 0.6594 36 1 0.3138 -1.9917 1.4961 37 1 0.2421 -0.4308 2.3485 38 1 2.0665 -2.7697 3.0683 39 1 1.9947 -1.2087 3.9207 40 1 -0.6095 -2.2995 3.8381 41 1 -1.2630 -2.7241 6.4178 42 1 -1.1893 -4.2851 5.5656 43 1 0.5634 -5.0606 7.1395 44 1 0.4893 -3.4994 7.9911 45 1 0.4077 -5.9962 10.6975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600160419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:43 Heat of formation + Delta-G solvation = -83.788271 kcal Electronic energy + Delta-G solvation = -20285.082354 eV Core-core repulsion = 17300.578437 eV Total energy + Delta-G solvation = -2984.503917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.01217 -38.91375 -35.01776 -33.40598 -32.50170 -31.88945 -30.76848 -27.77330 -27.21844 -25.50093 -24.54030 -22.60243 -21.42770 -20.62242 -19.58681 -18.36626 -16.81863 -16.07671 -15.64489 -15.53646 -15.37119 -14.98387 -14.45917 -14.29120 -13.92753 -13.67040 -13.30127 -13.24187 -12.95278 -12.53949 -12.17619 -12.10890 -11.84971 -11.56427 -11.51136 -11.21403 -11.13335 -10.90185 -10.87748 -10.81105 -10.71805 -10.60893 -10.54500 -10.46417 -9.91433 -9.62645 -9.14246 -8.95653 -8.69179 -8.29086 -5.93363 -3.97801 3.33248 3.36109 3.40428 3.42153 3.62660 4.22229 4.27894 4.41849 4.50028 4.88792 4.95265 4.97479 5.05838 5.10228 5.18452 5.23840 5.39370 5.40525 5.41262 5.49234 5.51835 5.58589 5.64043 5.68311 5.72196 5.73358 5.79037 5.88868 5.96130 6.07086 6.07630 6.12708 6.16517 6.26474 6.28369 6.29654 6.82020 6.94243 7.77092 7.90211 7.97057 8.10645 8.42013 8.85747 9.11009 9.65452 11.17606 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046210 B = 0.002745 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.783230 B =10196.747164 C =10459.299289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.138 4.138 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.080 4.080 8 H 0.075 0.925 9 C -0.125 4.125 10 C 0.117 3.883 11 N -0.745 5.745 12 C 0.508 3.492 13 O -0.536 6.536 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.396 0.604 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 12.472 -24.085 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.160 4.160 7 C -0.099 4.099 8 H 0.094 0.906 9 C -0.162 4.162 10 C -0.007 4.007 11 N -0.399 5.399 12 C 0.296 3.704 13 O -0.412 6.412 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.229 0.771 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.591 12.275 -23.631 26.755 hybrid contribution -1.164 -0.268 0.441 1.273 sum 1.427 12.007 -23.190 26.154 Atomic orbital electron populations 1.22042 0.94549 1.01897 1.01540 1.21178 0.95464 0.95191 0.94679 1.21904 1.00869 0.95206 1.01579 1.22479 0.97340 0.98705 0.96714 1.22473 0.97608 0.99734 0.96464 1.22485 0.99668 0.97843 0.95993 1.21790 0.96076 0.96694 0.95329 0.90628 1.22042 0.98259 1.00499 0.95419 1.21303 0.89785 0.98467 0.91149 1.46218 1.09430 1.61416 1.22868 1.21551 0.92089 0.76406 0.80358 1.90662 1.24140 1.55955 1.70426 1.21859 0.95261 1.00983 0.98923 1.18890 0.96075 0.95910 0.89176 1.21199 0.92856 1.37492 1.05031 0.92671 1.25030 0.95539 0.96119 0.97721 1.69988 1.18856 1.42478 1.21560 0.86650 0.82552 0.79064 0.79639 1.20257 1.21290 1.20262 0.92228 0.93149 0.92216 0.92645 0.92867 0.92623 0.91900 0.91600 0.91694 0.91753 0.91510 0.91330 0.91085 0.91016 0.91943 0.92183 0.77088 0.90334 0.90326 0.95852 0.95857 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 7.20 37.16 0.27 -0.71 16 2 C -0.07 -0.47 0.94 -153.39 -0.14 -0.61 16 3 C -0.14 -0.94 8.15 37.15 0.30 -0.64 16 4 C -0.11 -0.79 5.90 -25.08 -0.15 -0.94 16 5 C -0.13 -0.91 6.91 -24.74 -0.17 -1.08 16 6 C -0.12 -1.03 5.47 -25.07 -0.14 -1.17 16 7 C -0.08 -0.66 2.60 -89.50 -0.23 -0.89 16 8 H 0.08 0.66 7.67 -51.93 -0.40 0.27 16 9 C -0.12 -1.11 3.50 -26.73 -0.09 -1.20 16 10 C 0.12 1.48 5.52 -4.04 -0.02 1.46 16 11 N -0.75 -10.73 5.56 -60.29 -0.33 -11.06 16 12 C 0.51 10.09 7.83 -10.98 -0.09 10.01 16 13 O -0.54 -13.11 15.98 5.56 0.09 -13.02 16 14 C -0.13 -2.71 5.64 -27.88 -0.16 -2.87 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 16 C -0.53 -15.20 9.11 -34.44 -0.31 -15.52 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 20 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.06 0.41 6.65 -51.93 -0.35 0.06 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.41 6.82 -51.92 -0.35 0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 7.84 -51.93 -0.41 -0.01 16 31 H 0.07 0.46 7.84 -51.93 -0.41 0.05 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.61 7.78 -51.93 -0.40 0.21 16 36 H 0.07 0.60 6.86 -51.93 -0.36 0.24 16 37 H 0.07 0.60 6.51 -51.93 -0.34 0.26 16 38 H 0.06 0.86 7.46 -51.93 -0.39 0.48 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.40 4.43 8.47 -40.82 -0.35 4.09 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -33.77 351.73 -8.73 -42.50 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.35 Total: -1.85 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.15 Total: -11.66 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.40 Total: -38.14 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.77 -8.73 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600160419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.284 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds