Wall clock time and date at job start Mon Mar 30 2020 07:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.05462 * 2 1 4 4 C 1.54263 * 110.03197 * 238.58090 * 2 1 3 5 5 C 1.54885 * 104.19749 * 217.10610 * 4 2 1 6 6 C 1.54891 * 102.74706 * 37.94292 * 5 4 2 7 7 C 1.53876 * 110.02863 * 121.41724 * 2 1 3 8 8 H 1.09005 * 110.06728 * 238.59171 * 7 2 1 9 9 C 1.53001 * 110.03495 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46886 * 183.62072 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47084 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47084 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99751 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99788 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47116 * 59.99931 * 20 18 16 22 22 H 1.48505 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47061 * 299.99705 * 20 18 16 24 24 H 1.09003 * 109.47262 * 298.58451 * 1 2 3 25 25 H 1.09001 * 109.47300 * 58.58448 * 1 2 3 26 26 H 1.09009 * 109.47031 * 178.58594 * 1 2 3 27 27 H 1.09000 * 109.47428 * 181.41614 * 3 2 1 28 28 H 1.08999 * 109.47259 * 301.41862 * 3 2 1 29 29 H 1.08997 * 109.47590 * 61.41586 * 3 2 1 30 30 H 1.09001 * 110.48721 * 98.42672 * 4 2 1 31 31 H 1.09003 * 110.60345 * 335.84097 * 4 2 1 32 32 H 1.09003 * 110.75337 * 279.63217 * 5 4 2 33 33 H 1.08993 * 110.91971 * 156.33226 * 5 4 2 34 34 H 1.09003 * 110.48803 * 203.38076 * 6 5 4 35 35 H 1.08999 * 110.59989 * 80.79720 * 6 5 4 36 36 H 1.09001 * 109.46652 * 63.62417 * 9 7 2 37 37 H 1.08992 * 109.47514 * 303.62506 * 9 7 2 38 38 H 1.09002 * 109.47398 * 300.00496 * 10 9 7 39 39 H 1.09001 * 109.47194 * 60.00677 * 10 9 7 40 40 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 41 41 H 1.09002 * 109.47152 * 300.00160 * 14 12 11 42 42 H 1.09001 * 109.46980 * 60.00059 * 14 12 11 43 43 H 1.09002 * 109.47045 * 299.99967 * 15 14 12 44 44 H 1.09001 * 109.47375 * 60.00042 * 15 14 12 45 45 H 0.97000 * 120.00354 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3136 -1.5008 -0.7191 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7536 1.2338 8 1 2.6864 -0.0958 1.8332 9 6 0.8861 -1.2664 2.0745 10 6 1.4225 -1.9341 3.3423 11 7 0.3013 -2.4256 4.1470 12 6 0.5353 -3.0530 5.3167 13 8 1.6741 -3.2111 5.7027 14 6 -0.6180 -3.5592 6.1442 15 6 -0.0817 -4.2256 7.4127 16 6 -1.2350 -4.7323 8.2399 17 1 -2.2490 -4.5926 7.8955 18 6 -0.9956 -5.3743 9.4364 19 7 0.2392 -5.5449 9.8555 20 14 -2.4251 -6.0030 10.4614 21 1 -3.2023 -6.9924 9.6727 22 1 -1.9046 -6.6498 11.6927 23 1 -3.3047 -4.8660 10.8341 24 1 -0.3634 0.4917 0.9024 25 1 -0.3634 0.5357 -0.8770 26 1 -0.3633 -1.0274 -0.0254 27 1 3.1443 1.4262 -0.0254 28 1 1.6761 1.9622 -0.8770 29 1 1.7174 1.9471 0.9024 30 1 2.3297 -0.0537 -2.0255 31 1 1.3152 -1.4660 -1.5988 32 1 4.1710 -0.8290 -0.6751 33 1 3.5357 -2.3678 -1.3412 34 1 3.7637 -2.1037 1.3311 35 1 2.2778 -2.8431 0.6594 36 1 0.3138 -1.9917 1.4961 37 1 0.2421 -0.4308 2.3485 38 1 2.0665 -2.7697 3.0683 39 1 1.9947 -1.2087 3.9207 40 1 -0.6095 -2.2995 3.8381 41 1 -1.2630 -2.7241 6.4178 42 1 -1.1893 -4.2851 5.5656 43 1 0.5634 -5.0606 7.1395 44 1 0.4893 -3.4994 7.9911 45 1 0.4077 -5.9962 10.6975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600160419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:43 Heat of formation + Delta-G solvation = -104.738960 kcal Electronic energy + Delta-G solvation = -20285.990844 eV Core-core repulsion = 17300.578437 eV Total energy + Delta-G solvation = -2985.412407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88935 -40.26184 -36.28969 -35.53001 -33.29004 -33.07380 -32.41360 -28.52665 -28.27926 -27.06881 -25.34606 -23.80711 -22.98619 -21.41650 -21.06549 -19.07717 -18.74466 -17.42480 -17.03533 -16.79269 -16.42978 -16.25283 -15.92709 -15.44586 -14.86318 -14.55276 -14.27309 -14.18791 -14.13580 -13.85630 -13.79040 -13.23549 -13.02414 -12.77066 -12.56233 -12.51089 -12.32178 -12.25399 -11.90411 -11.84228 -11.63607 -11.57349 -11.40763 -11.32620 -11.29498 -11.22217 -11.11974 -10.67003 -10.56099 -10.03513 -8.17607 -6.32075 1.42163 1.47046 1.54751 1.73225 2.29243 2.46208 3.15077 3.59295 3.65705 3.78136 4.03626 4.16606 4.19866 4.36561 4.45421 4.48805 4.50767 4.52875 4.56847 4.63916 4.71645 4.75681 4.79598 4.88884 4.98464 5.01666 5.07905 5.10639 5.16574 5.17112 5.22285 5.28258 5.30896 5.46659 5.49386 5.52742 5.53828 5.56949 5.63498 5.65397 5.85788 6.17866 6.65279 6.86494 7.37197 7.39106 8.95020 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046210 B = 0.002745 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.783230 B =10196.747164 C =10459.299289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.080 4.080 8 H 0.068 0.932 9 C -0.111 4.111 10 C 0.117 3.883 11 N -0.718 5.718 12 C 0.507 3.493 13 O -0.593 6.593 14 C -0.119 4.119 15 C 0.042 3.958 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.262 1.262 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.417 0.583 41 H 0.105 0.895 42 H 0.105 0.895 43 H -0.019 1.019 44 H -0.019 1.019 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.033 13.209 -25.676 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 C -0.195 4.195 4 C -0.150 4.150 5 C -0.161 4.161 6 C -0.163 4.163 7 C -0.099 4.099 8 H 0.086 0.914 9 C -0.148 4.148 10 C -0.007 4.007 11 N -0.371 5.371 12 C 0.296 3.704 13 O -0.473 6.473 14 C -0.159 4.159 15 C 0.004 3.996 16 C -0.582 4.582 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.214 1.214 23 H -0.186 1.186 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.254 0.746 41 H 0.123 0.877 42 H 0.123 0.877 43 H -0.001 1.001 44 H -0.001 1.001 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.126 13.047 -25.289 28.456 hybrid contribution -0.269 -0.469 0.885 1.038 sum -0.395 12.577 -24.404 27.457 Atomic orbital electron populations 1.22043 0.93917 1.02121 1.01959 1.21157 0.95935 0.95190 0.93958 1.21900 1.00757 0.94984 1.01872 1.22474 0.96994 0.98788 0.96732 1.22467 0.98002 1.00002 0.95647 1.22493 0.99258 0.97858 0.96736 1.21784 0.95722 0.96586 0.95767 0.91368 1.21984 0.98593 1.00825 0.93418 1.21427 0.89145 0.97875 0.92264 1.45929 1.11225 1.59056 1.20940 1.21384 0.90817 0.76614 0.81615 1.90649 1.26020 1.58550 1.72122 1.21638 0.95766 1.02081 0.96413 1.18688 0.95133 0.93866 0.91926 1.21702 0.93915 1.37212 1.05393 0.90503 1.26170 0.98710 0.96275 0.99414 1.70176 1.21865 1.43602 1.22239 0.85353 0.78475 0.78899 0.77384 1.18621 1.21354 1.18627 0.92110 0.92489 0.92065 0.92898 0.92037 0.92836 0.91131 0.91346 0.91603 0.91371 0.92732 0.91742 0.89848 0.89661 0.93234 0.93553 0.74633 0.87700 0.87697 1.00076 1.00074 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.20 71.98 0.52 -1.04 16 2 C -0.06 -0.76 0.94 -51.46 -0.05 -0.81 16 3 C -0.14 -1.62 8.15 71.98 0.59 -1.03 16 4 C -0.11 -1.32 5.90 31.67 0.19 -1.14 16 5 C -0.12 -1.66 6.91 31.88 0.22 -1.44 16 6 C -0.13 -2.06 5.47 31.67 0.17 -1.89 16 7 C -0.08 -1.22 2.60 -10.07 -0.03 -1.24 16 8 H 0.07 1.16 7.67 -2.38 -0.02 1.14 16 9 C -0.11 -1.75 3.50 30.59 0.11 -1.64 16 10 C 0.12 2.88 5.52 86.38 0.48 3.36 16 11 N -0.72 -19.62 5.56 -463.05 -2.57 -22.20 16 12 C 0.51 20.22 7.83 87.66 0.69 20.90 16 13 O -0.59 -30.27 15.98 -3.02 -0.05 -30.32 16 14 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 15 C 0.04 2.36 4.26 29.85 0.13 2.49 16 16 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 17 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 18 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 19 N -0.94 -60.44 13.29 21.45 0.28 -60.16 16 20 Si 0.98 44.64 29.54 68.60 2.03 46.66 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H 0.06 0.65 6.65 -2.39 -0.02 0.63 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.65 6.82 -2.38 -0.02 0.64 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.74 7.84 -2.39 -0.02 0.72 16 31 H 0.07 0.79 7.84 -2.39 -0.02 0.77 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.10 7.78 -2.39 -0.02 1.08 16 36 H 0.08 1.17 6.86 -2.39 -0.02 1.15 16 37 H 0.08 1.17 6.51 -2.39 -0.02 1.15 16 38 H 0.05 1.38 7.46 -2.39 -0.02 1.37 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.42 8.04 8.47 -92.71 -0.79 7.26 16 41 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 42 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 43 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 44 H -0.02 -1.24 8.10 -2.39 -0.02 -1.25 16 45 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -76.36 351.73 3.71 -72.65 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.15 Total: 12.73 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 3.87 Total: -19.37 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -2.29 Total: -82.35 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.05 Total: -30.32 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -76.36 3.71 -72.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600160419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.092 kcal (2) G-P(sol) polarization free energy of solvation -76.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds