Wall clock time and date at job start Mon Mar 30 2020 07:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47830 * 2 1 4 4 C 1.53106 * 109.40747 * 240.00984 * 2 1 3 5 5 C 1.53179 * 109.15717 * 297.49530 * 4 2 1 6 6 H 1.08998 * 109.54809 * 63.06064 * 5 4 2 7 7 N 1.46900 * 109.54540 * 183.24037 * 5 4 2 8 8 C 1.46891 * 111.00097 * 204.81655 * 7 5 4 9 9 H 1.08998 * 110.43494 * 323.91749 * 8 7 5 10 10 C 1.54274 * 110.48375 * 86.45454 * 8 7 5 11 11 C 1.53874 * 106.59583 * 142.42106 * 10 8 7 12 12 C 1.54261 * 106.60056 * 0.02562 * 11 10 8 13 13 H 1.08999 * 110.48869 * 95.20527 * 12 11 10 14 14 C 1.50702 * 110.48402 * 217.71282 * 12 11 10 15 15 H 1.08002 * 120.00299 * 118.55010 * 14 12 11 16 16 C 1.37884 * 119.99942 * 298.26568 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.54885 * 104.19644 * 336.38879 * 12 11 10 23 23 C 1.53182 * 109.10503 * 303.14844 * 5 4 2 24 24 C 1.53095 * 109.16024 * 56.93838 * 23 5 4 25 25 O 1.42896 * 109.48475 * 120.02550 * 2 1 3 26 26 H 1.08997 * 109.47139 * 299.97523 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.97632 * 1 2 3 28 28 H 1.09004 * 109.46669 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47265 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46925 * 300.02257 * 3 2 1 31 31 H 1.08994 * 109.47348 * 60.02605 * 3 2 1 32 32 H 1.08992 * 109.45626 * 177.62822 * 4 2 1 33 33 H 1.09006 * 109.59732 * 57.43825 * 4 2 1 34 34 H 1.00904 * 111.00093 * 80.85946 * 7 5 4 35 35 H 1.08998 * 110.03110 * 23.13542 * 10 8 7 36 36 H 1.09001 * 110.02903 * 261.70607 * 10 8 7 37 37 H 1.09004 * 110.03230 * 240.71337 * 11 10 8 38 38 H 1.09000 * 110.03197 * 119.28620 * 11 10 8 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.09002 * 110.75604 * 156.26006 * 22 12 11 41 41 H 1.09004 * 110.75942 * 279.62814 * 22 12 11 42 42 H 1.09001 * 109.52311 * 176.84088 * 23 5 4 43 43 H 1.08993 * 109.52444 * 296.96826 * 23 5 4 44 44 H 1.09000 * 109.48016 * 62.37650 * 24 23 5 45 45 H 1.09005 * 109.47490 * 182.39304 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0388 -0.7218 -1.2507 5 6 1.5757 -2.1814 -1.2120 6 1 0.4868 -2.2195 -1.2414 7 7 2.1240 -2.9018 -2.3690 8 6 1.2904 -4.0622 -2.7099 9 1 0.8921 -4.5234 -1.8062 10 6 0.1434 -3.6444 -3.6533 11 6 -0.0427 -4.7966 -4.6561 12 6 0.9971 -5.8746 -4.2867 13 1 0.5506 -6.6296 -3.6397 14 6 1.5592 -6.5133 -5.5306 15 1 2.6148 -6.4386 -5.7463 16 6 0.7267 -7.1981 -6.3903 17 7 -0.5588 -7.2891 -6.1277 18 14 1.4246 -7.9964 -7.9281 19 1 2.8877 -7.7510 -7.9928 20 1 1.1698 -9.4589 -7.8859 21 1 0.7712 -7.4146 -9.1281 22 6 2.1016 -5.0941 -3.5318 23 6 2.0766 -2.8322 0.0811 24 6 1.5646 -2.0283 1.2792 25 8 2.0067 -0.6741 1.1663 26 1 -0.3633 0.5134 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1302 1.4423 -0.0005 30 1 1.6766 1.9564 -0.8898 31 1 1.6774 1.9562 0.8901 32 1 3.1279 -0.6856 -1.2730 33 1 1.6390 -0.2364 -2.1411 34 1 3.0796 -3.1795 -2.2024 35 1 0.4092 -2.7288 -4.1816 36 1 -0.7732 -3.4941 -3.0829 37 1 0.1328 -4.4402 -5.6711 38 1 -1.0496 -5.2055 -4.5723 39 1 -1.1445 -7.7706 -6.7327 40 1 2.6622 -5.7577 -2.8734 41 1 2.7674 -4.5912 -4.2331 42 1 1.7038 -3.8546 0.1424 43 1 3.1665 -2.8410 0.0860 44 1 0.4751 -2.0549 1.2959 45 1 1.9530 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601964716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:06 Heat of formation + Delta-G solvation = -73.275020 kcal Electronic energy + Delta-G solvation = -21394.055097 eV Core-core repulsion = 18410.007068 eV Total energy + Delta-G solvation = -2984.048028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.20289 -37.69392 -35.01391 -33.71534 -32.41760 -30.49003 -28.16357 -28.06045 -27.47829 -25.94649 -23.73397 -23.33778 -21.51113 -19.69398 -19.10325 -18.79469 -16.40917 -16.20778 -16.14678 -15.36314 -14.89410 -14.73839 -14.48579 -14.12181 -13.91861 -13.51703 -13.12818 -12.59646 -12.44873 -12.31324 -12.24621 -12.09207 -11.80140 -11.64012 -11.32525 -11.13624 -11.08864 -11.00410 -10.83533 -10.50033 -10.30838 -10.23848 -9.96627 -9.91034 -9.56006 -9.46040 -9.05491 -8.66696 -8.34485 -8.04359 -5.97233 -3.99567 3.31675 3.39752 3.43847 3.63065 4.29271 4.47812 4.66200 4.71913 4.74167 4.93579 5.10467 5.14500 5.27912 5.35006 5.37676 5.43107 5.50597 5.59104 5.60222 5.61185 5.72516 5.78391 5.85176 5.88641 5.92560 6.01259 6.10350 6.14531 6.25029 6.37877 6.57559 6.67565 6.82317 6.88770 7.02522 7.17659 7.22615 7.40205 7.57994 7.71106 7.80012 7.96498 8.06588 8.50726 9.03367 9.64208 11.12439 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043460 B = 0.003634 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.121030 B = 7702.638056 C = 7775.696548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 C -0.136 4.136 4 C -0.127 4.127 5 C 0.086 3.914 6 H 0.078 0.922 7 N -0.676 5.676 8 C 0.080 3.920 9 H 0.037 0.963 10 C -0.114 4.114 11 C -0.094 4.094 12 C 0.050 3.950 13 H 0.025 0.975 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.115 4.115 23 C -0.186 4.186 24 C 0.064 3.936 25 O -0.377 6.377 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.337 0.663 35 H 0.059 0.941 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.258 0.742 40 H 0.042 0.958 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 13.810 13.319 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.071 3.929 3 C -0.193 4.193 4 C -0.166 4.166 5 C -0.024 4.024 6 H 0.097 0.903 7 N -0.305 5.305 8 C -0.029 4.029 9 H 0.055 0.945 10 C -0.153 4.153 11 C -0.132 4.132 12 C 0.031 3.969 13 H 0.043 0.957 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.153 4.153 23 C -0.225 4.225 24 C -0.014 4.014 25 O -0.296 6.296 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.155 0.845 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.364 14.232 12.891 19.348 hybrid contribution 0.265 -1.364 -0.336 1.429 sum 2.629 12.868 12.555 18.170 Atomic orbital electron populations 1.22462 0.95861 1.02764 1.02634 1.21527 0.93083 0.92794 0.85539 1.21739 1.01883 0.93378 1.02316 1.22166 1.01727 0.95203 0.97482 1.21653 0.99478 0.93357 0.87950 0.90341 1.60695 1.05699 1.27232 1.36919 1.22494 0.94636 0.89196 0.96575 0.94525 1.22281 0.95364 1.00102 0.97505 1.22026 1.00399 0.93997 0.96791 1.19383 0.90554 0.92418 0.94495 0.95650 1.21206 0.94334 1.33047 1.06379 0.92656 1.24985 0.94897 0.96213 0.97961 1.69991 1.03277 1.42426 1.37184 0.86598 0.79267 0.79064 0.83434 1.19813 1.21155 1.21090 1.22723 0.98923 0.95922 0.97727 1.22965 1.02142 1.00397 0.97038 1.22488 0.98695 0.82141 0.98045 1.87932 1.73814 1.24528 1.43327 0.92081 0.91307 0.91862 0.91882 0.91056 0.92042 0.91239 0.90324 0.84526 0.92219 0.94448 0.93017 0.92949 0.93234 0.93937 0.91628 0.90973 0.91036 0.92961 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 7.93 37.16 0.29 -1.46 16 2 C 0.11 1.16 1.11 -90.56 -0.10 1.06 16 3 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 4 C -0.13 -1.47 4.53 -26.58 -0.12 -1.60 16 5 C 0.09 1.10 2.10 -67.53 -0.14 0.96 16 6 H 0.08 1.07 6.23 -51.93 -0.32 0.75 16 7 N -0.68 -10.14 6.05 -97.83 -0.59 -10.73 16 8 C 0.08 1.42 2.96 -66.07 -0.20 1.22 16 9 H 0.04 0.65 7.25 -51.93 -0.38 0.27 16 10 C -0.11 -2.21 6.35 -25.61 -0.16 -2.37 16 11 C -0.09 -2.22 5.41 -25.62 -0.14 -2.36 16 12 C 0.05 1.26 2.79 -90.12 -0.25 1.01 16 13 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 14 C -0.51 -14.14 8.40 -34.44 -0.29 -14.43 16 15 H 0.06 1.52 7.77 -52.49 -0.41 1.11 16 16 C 0.06 1.70 5.33 -17.82 -0.09 1.61 16 17 N -0.89 -25.80 12.36 55.43 0.69 -25.11 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.11 -2.36 5.70 -24.76 -0.14 -2.50 16 23 C -0.19 -2.15 5.39 -26.59 -0.14 -2.29 16 24 C 0.06 0.67 6.51 37.21 0.24 0.92 16 25 O -0.38 -4.49 10.24 -35.23 -0.36 -4.85 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.34 4.80 8.18 -39.29 -0.32 4.48 16 35 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 1.32 7.83 -51.93 -0.41 0.91 16 38 H 0.05 1.32 7.94 -51.93 -0.41 0.91 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.38 8.05 -51.93 -0.42 0.97 16 42 H 0.07 0.86 7.52 -51.93 -0.39 0.47 16 43 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 44 H 0.05 0.53 6.34 -51.93 -0.33 0.20 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -28.61 338.96 -9.36 -37.97 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.27 Total: 2.29 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -0.91 Total: -21.12 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.09 Total: -35.84 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.36 Total: -4.85 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.61 -9.36 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601964716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.304 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds