Wall clock time and date at job start Mon Mar 30 2020 07:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47830 * 2 1 4 4 C 1.53106 * 109.40747 * 240.00984 * 2 1 3 5 5 C 1.53179 * 109.15717 * 297.49530 * 4 2 1 6 6 H 1.08998 * 109.54809 * 63.06064 * 5 4 2 7 7 N 1.46900 * 109.54540 * 183.24037 * 5 4 2 8 8 C 1.46891 * 111.00097 * 204.81655 * 7 5 4 9 9 H 1.08998 * 110.43494 * 323.91749 * 8 7 5 10 10 C 1.54274 * 110.48375 * 86.45454 * 8 7 5 11 11 C 1.53874 * 106.59583 * 142.42106 * 10 8 7 12 12 C 1.54261 * 106.60056 * 0.02562 * 11 10 8 13 13 H 1.08999 * 110.48869 * 95.20527 * 12 11 10 14 14 C 1.50702 * 110.48402 * 217.71282 * 12 11 10 15 15 H 1.08002 * 120.00299 * 118.55010 * 14 12 11 16 16 C 1.37884 * 119.99942 * 298.26568 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.54885 * 104.19644 * 336.38879 * 12 11 10 23 23 C 1.53182 * 109.10503 * 303.14844 * 5 4 2 24 24 C 1.53095 * 109.16024 * 56.93838 * 23 5 4 25 25 O 1.42896 * 109.48475 * 120.02550 * 2 1 3 26 26 H 1.08997 * 109.47139 * 299.97523 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.97632 * 1 2 3 28 28 H 1.09004 * 109.46669 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47265 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46925 * 300.02257 * 3 2 1 31 31 H 1.08994 * 109.47348 * 60.02605 * 3 2 1 32 32 H 1.08992 * 109.45626 * 177.62822 * 4 2 1 33 33 H 1.09006 * 109.59732 * 57.43825 * 4 2 1 34 34 H 1.00904 * 111.00093 * 80.85946 * 7 5 4 35 35 H 1.08998 * 110.03110 * 23.13542 * 10 8 7 36 36 H 1.09001 * 110.02903 * 261.70607 * 10 8 7 37 37 H 1.09004 * 110.03230 * 240.71337 * 11 10 8 38 38 H 1.09000 * 110.03197 * 119.28620 * 11 10 8 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.09002 * 110.75604 * 156.26006 * 22 12 11 41 41 H 1.09004 * 110.75942 * 279.62814 * 22 12 11 42 42 H 1.09001 * 109.52311 * 176.84088 * 23 5 4 43 43 H 1.08993 * 109.52444 * 296.96826 * 23 5 4 44 44 H 1.09000 * 109.48016 * 62.37650 * 24 23 5 45 45 H 1.09005 * 109.47490 * 182.39304 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0388 -0.7218 -1.2507 5 6 1.5757 -2.1814 -1.2120 6 1 0.4868 -2.2195 -1.2414 7 7 2.1240 -2.9018 -2.3690 8 6 1.2904 -4.0622 -2.7099 9 1 0.8921 -4.5234 -1.8062 10 6 0.1434 -3.6444 -3.6533 11 6 -0.0427 -4.7966 -4.6561 12 6 0.9971 -5.8746 -4.2867 13 1 0.5506 -6.6296 -3.6397 14 6 1.5592 -6.5133 -5.5306 15 1 2.6148 -6.4386 -5.7463 16 6 0.7267 -7.1981 -6.3903 17 7 -0.5588 -7.2891 -6.1277 18 14 1.4246 -7.9964 -7.9281 19 1 2.8877 -7.7510 -7.9928 20 1 1.1698 -9.4589 -7.8859 21 1 0.7712 -7.4146 -9.1281 22 6 2.1016 -5.0941 -3.5318 23 6 2.0766 -2.8322 0.0811 24 6 1.5646 -2.0283 1.2792 25 8 2.0067 -0.6741 1.1663 26 1 -0.3633 0.5134 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1302 1.4423 -0.0005 30 1 1.6766 1.9564 -0.8898 31 1 1.6774 1.9562 0.8901 32 1 3.1279 -0.6856 -1.2730 33 1 1.6390 -0.2364 -2.1411 34 1 3.0796 -3.1795 -2.2024 35 1 0.4092 -2.7288 -4.1816 36 1 -0.7732 -3.4941 -3.0829 37 1 0.1328 -4.4402 -5.6711 38 1 -1.0496 -5.2055 -4.5723 39 1 -1.1445 -7.7706 -6.7327 40 1 2.6622 -5.7577 -2.8734 41 1 2.7674 -4.5912 -4.2331 42 1 1.7038 -3.8546 0.1424 43 1 3.1665 -2.8410 0.0860 44 1 0.4751 -2.0549 1.2959 45 1 1.9530 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601964716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:05 Heat of formation + Delta-G solvation = -90.024190 kcal Electronic energy + Delta-G solvation = -21394.781395 eV Core-core repulsion = 18410.007068 eV Total energy + Delta-G solvation = -2984.774327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11632 -39.22641 -36.38399 -34.54311 -34.30609 -31.79938 -29.89767 -29.16875 -28.21237 -27.51458 -25.51628 -24.37855 -22.51593 -21.23327 -20.57803 -20.10222 -18.31297 -17.14117 -17.07159 -16.84451 -16.55787 -16.12518 -15.62981 -15.29441 -15.00198 -14.74518 -14.32642 -14.05932 -13.94972 -13.56012 -13.25240 -13.02344 -12.94318 -12.83014 -12.74655 -12.60304 -12.37862 -12.28677 -12.08020 -11.99750 -11.95100 -11.69715 -11.60251 -11.36484 -11.06480 -10.85699 -10.72362 -10.47877 -10.40890 -9.27249 -8.11725 -6.21241 1.39595 1.41419 1.52937 2.43601 2.83211 3.16140 3.19212 3.75265 3.83141 3.92153 3.97491 4.08456 4.13615 4.20216 4.26792 4.36776 4.44179 4.47092 4.68484 4.70166 4.78668 4.81152 4.87239 4.90524 4.91788 4.98169 5.05372 5.07809 5.09672 5.13016 5.16181 5.20717 5.28946 5.34602 5.42298 5.45475 5.52435 5.68164 5.91689 5.99404 6.24738 6.36026 6.40909 6.53734 6.90141 7.46137 8.97423 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043460 B = 0.003634 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.121030 B = 7702.638056 C = 7775.696548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 C -0.135 4.135 4 C -0.122 4.122 5 C 0.086 3.914 6 H 0.072 0.928 7 N -0.676 5.676 8 C 0.097 3.903 9 H 0.042 0.958 10 C -0.104 4.104 11 C -0.084 4.084 12 C 0.039 3.961 13 H -0.003 1.003 14 C -0.531 4.531 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.920 5.920 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.104 4.104 23 C -0.181 4.181 24 C 0.063 3.937 25 O -0.389 6.389 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.343 0.657 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.025 0.975 38 H 0.027 0.973 39 H 0.259 0.741 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 14.929 14.030 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.068 3.932 3 C -0.192 4.192 4 C -0.160 4.160 5 C -0.024 4.024 6 H 0.091 0.909 7 N -0.306 5.306 8 C -0.013 4.013 9 H 0.060 0.940 10 C -0.142 4.142 11 C -0.123 4.123 12 C 0.020 3.980 13 H 0.015 0.985 14 C -0.569 4.569 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.560 5.560 18 Si 0.779 3.221 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.142 4.142 23 C -0.220 4.220 24 C -0.014 4.014 25 O -0.309 6.309 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.162 0.838 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.133 15.363 13.616 20.766 hybrid contribution 0.022 -1.717 -0.545 1.802 sum 3.155 13.645 13.071 19.157 Atomic orbital electron populations 1.22449 0.95235 1.02537 1.03343 1.21636 0.93604 0.93357 0.84593 1.21756 1.01770 0.92436 1.03234 1.22114 1.01477 0.94330 0.98113 1.21691 0.99081 0.93925 0.87660 0.90934 1.60612 1.05718 1.25777 1.38539 1.22175 0.93775 0.89402 0.95906 0.93968 1.22147 0.96964 0.98202 0.96885 1.21813 0.98567 0.95209 0.96678 1.19391 0.92302 0.92489 0.93792 0.98527 1.21578 0.94352 1.33410 1.07546 0.92908 1.25780 0.95215 0.96846 1.01032 1.70114 1.04401 1.43140 1.38312 0.85578 0.78825 0.78093 0.79609 1.19045 1.20653 1.20700 1.22538 0.97735 0.96263 0.97681 1.22893 1.02082 1.00248 0.96792 1.22565 0.99086 0.81625 0.98148 1.87927 1.74167 1.25024 1.43800 0.91387 0.90630 0.92535 0.92104 0.89806 0.91497 0.91569 0.90478 0.83777 0.91734 0.92864 0.95600 0.95428 0.93189 0.92886 0.92152 0.91254 0.91030 0.92447 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 7.93 71.98 0.57 -2.52 16 2 C 0.11 2.04 1.11 -10.76 -0.01 2.03 16 3 C -0.13 -2.10 8.85 71.98 0.64 -1.46 16 4 C -0.12 -2.58 4.53 30.69 0.14 -2.44 16 5 C 0.09 2.04 2.10 45.04 0.09 2.13 16 6 H 0.07 1.83 6.23 -2.39 -0.01 1.82 16 7 N -0.68 -19.04 6.05 -463.42 -2.80 -21.84 16 8 C 0.10 3.32 2.96 45.99 0.14 3.45 16 9 H 0.04 1.42 7.25 -2.39 -0.02 1.40 16 10 C -0.10 -3.93 6.35 31.32 0.20 -3.74 16 11 C -0.08 -4.08 5.41 31.32 0.17 -3.91 16 12 C 0.04 2.00 2.79 -10.47 -0.03 1.97 16 13 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 14 C -0.53 -29.83 8.40 25.60 0.22 -29.62 16 15 H 0.05 2.92 7.77 -2.91 -0.02 2.89 16 16 C 0.01 0.55 5.33 84.66 0.45 1.00 16 17 N -0.92 -54.51 12.36 21.45 0.27 -54.25 16 18 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 C -0.10 -4.23 5.70 31.87 0.18 -4.05 16 23 C -0.18 -3.81 5.39 30.69 0.17 -3.64 16 24 C 0.06 1.20 6.51 72.01 0.47 1.67 16 25 O -0.39 -8.44 10.24 -148.98 -1.53 -9.97 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.05 4.98 -2.38 -0.01 1.04 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.34 9.11 8.18 -89.69 -0.73 8.37 16 35 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.03 1.34 7.83 -2.38 -0.02 1.32 16 38 H 0.03 1.42 7.94 -2.39 -0.02 1.41 16 39 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 2.51 8.05 -2.38 -0.02 2.49 16 42 H 0.07 1.51 7.52 -2.39 -0.02 1.49 16 43 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 44 H 0.06 1.04 6.34 -2.39 -0.02 1.02 16 45 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -61.37 338.96 1.56 -59.81 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.21 Total: 18.97 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 3.39 Total: -39.12 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -2.54 Total: -76.09 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -1.53 Total: -9.97 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.37 1.56 -59.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601964716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.212 kcal (2) G-P(sol) polarization free energy of solvation -61.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds