Wall clock time and date at job start Mon Mar 30 2020 07:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47792 * 2 1 4 4 C 1.53093 * 109.47917 * 120.02258 * 2 1 3 5 5 C 1.53182 * 109.16383 * 62.37420 * 4 2 1 6 6 H 1.08998 * 109.54375 * 297.02255 * 5 4 2 7 7 N 1.46900 * 109.54237 * 176.84904 * 5 4 2 8 8 C 1.46894 * 110.99918 * 155.17894 * 7 5 4 9 9 H 1.09000 * 110.81902 * 323.11348 * 8 7 5 10 10 C 1.54887 * 110.75889 * 86.45405 * 8 7 5 11 11 C 1.54266 * 104.19888 * 156.25489 * 10 8 7 12 12 C 1.53872 * 106.59640 * 336.38805 * 11 10 8 13 13 H 1.09002 * 110.03208 * 119.28196 * 12 11 10 14 14 C 1.50702 * 110.03107 * 240.71363 * 12 11 10 15 15 H 1.07992 * 119.99795 * 118.55175 * 14 12 11 16 16 C 1.37874 * 119.99956 * 298.54651 * 14 12 11 17 17 N 1.31513 * 119.99872 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 120.00151 * 0.02562 * 16 14 12 19 19 H 1.48503 * 109.47304 * 90.00119 * 18 16 14 20 20 H 1.48504 * 109.47376 * 209.99758 * 18 16 14 21 21 H 1.48495 * 109.47214 * 329.99850 * 18 16 14 22 22 C 1.54266 * 106.60044 * 359.97438 * 12 11 10 23 23 C 1.53178 * 109.10713 * 56.93518 * 5 4 2 24 24 C 1.53099 * 109.15832 * 303.15213 * 23 5 4 25 25 O 1.42903 * 109.48871 * 57.47926 * 24 23 5 26 26 H 1.08997 * 109.47399 * 299.97951 * 1 2 3 27 27 H 1.09004 * 109.47022 * 59.98384 * 1 2 3 28 28 H 1.09000 * 109.47026 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46659 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47480 * 300.01979 * 3 2 1 31 31 H 1.08994 * 109.47531 * 60.02168 * 3 2 1 32 32 H 1.09000 * 109.52041 * 302.46895 * 4 2 1 33 33 H 1.09000 * 109.57363 * 182.31032 * 4 2 1 34 34 H 1.00903 * 110.99673 * 279.12833 * 7 5 4 35 35 H 1.09001 * 110.48816 * 37.57415 * 10 8 7 36 36 H 1.09004 * 110.48531 * 274.93631 * 10 8 7 37 37 H 1.09003 * 110.03179 * 95.67576 * 11 10 8 38 38 H 1.09003 * 110.02980 * 217.05505 * 11 10 8 39 39 H 0.97001 * 119.99819 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.48438 * 142.28717 * 22 12 11 41 41 H 1.08998 * 110.48431 * 264.79545 * 22 12 11 42 42 H 1.09000 * 109.51927 * 62.97220 * 23 5 4 43 43 H 1.08997 * 109.51940 * 183.15577 * 23 5 4 44 44 H 1.09003 * 109.40867 * 297.49215 * 24 23 5 45 45 H 1.09006 * 109.49049 * 177.51187 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 1.5757 -2.1813 1.2124 6 1 0.4867 -2.2179 1.2427 7 7 2.1239 -2.9013 2.3695 8 6 1.2890 -4.0604 2.7121 9 1 0.2331 -3.8348 2.5632 10 6 1.7071 -5.3016 1.8852 11 6 1.2287 -6.4990 2.7321 12 6 1.1307 -5.9992 4.1840 13 1 0.1055 -6.0920 4.5425 14 6 2.0605 -6.7916 5.0665 15 1 2.8629 -6.2936 5.5903 16 6 1.8866 -8.1523 5.2053 17 7 2.6977 -8.8436 5.9758 18 14 0.4990 -9.0138 4.2989 19 1 0.9805 -9.4619 2.9675 20 1 0.0501 -10.1911 5.0848 21 1 -0.6368 -8.0733 4.1237 22 6 1.5536 -4.5157 4.1690 23 6 2.0747 -2.8336 -0.0806 24 6 1.5646 -2.0286 -1.2788 25 8 2.0066 -0.6744 -1.1664 26 1 -0.3634 0.5135 0.8901 27 1 -0.3633 0.5141 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1303 1.4422 -0.0005 30 1 1.6767 1.9564 -0.8897 31 1 1.6773 1.9562 0.8901 32 1 1.6420 -0.2355 2.1399 33 1 3.1297 -0.6873 1.2722 34 1 3.0790 -3.1804 2.2023 35 1 2.7896 -5.3304 1.7611 36 1 1.2108 -5.2982 0.9147 37 1 0.2511 -6.8344 2.3858 38 1 1.9484 -7.3150 2.6650 39 1 2.5756 -9.8010 6.0732 40 1 0.9449 -3.9385 4.8651 41 1 2.6106 -4.4179 4.4162 42 1 3.1646 -2.8427 -0.0868 43 1 1.7006 -3.8556 -0.1408 44 1 0.4750 -2.0552 -1.2956 45 1 1.9530 -2.4625 -2.2003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601964717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:07 Heat of formation + Delta-G solvation = -85.382720 kcal Electronic energy + Delta-G solvation = -21546.817552 eV Core-core repulsion = 18562.244494 eV Total energy + Delta-G solvation = -2984.573058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13757 -39.42391 -36.41990 -34.55739 -34.32956 -32.02643 -30.10164 -29.17918 -28.20194 -27.86350 -25.11309 -24.42431 -22.38096 -21.66914 -20.80238 -20.02163 -18.59085 -17.39940 -17.13372 -16.84484 -16.29950 -16.07979 -15.66294 -15.19928 -14.99832 -14.83712 -14.59362 -14.04615 -13.95810 -13.69942 -13.32880 -13.20568 -12.93670 -12.80571 -12.76907 -12.62994 -12.48202 -12.16455 -12.12906 -11.98399 -11.96313 -11.62143 -11.56808 -11.49714 -11.26826 -10.89852 -10.82663 -10.71665 -10.39676 -9.21351 -8.28079 -6.30681 1.32374 1.35720 1.46166 2.35015 2.85184 3.06467 3.15196 3.75695 3.82108 3.91256 3.98636 4.01574 4.12546 4.13902 4.21976 4.32358 4.46236 4.48841 4.57776 4.70718 4.74930 4.76456 4.82122 4.85182 4.91015 4.92334 4.93091 5.02021 5.05855 5.06605 5.14202 5.16363 5.22212 5.26866 5.35946 5.38004 5.44267 5.55671 5.64923 5.82980 6.24107 6.34386 6.38563 6.49781 6.76945 7.34223 8.89048 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.041497 B = 0.004008 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.579824 B = 6983.559033 C = 7221.884906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 C -0.136 4.136 4 C -0.124 4.124 5 C 0.088 3.912 6 H 0.081 0.919 7 N -0.679 5.679 8 C 0.098 3.902 9 H 0.089 0.911 10 C -0.134 4.134 11 C -0.130 4.130 12 C 0.003 3.997 13 H 0.025 0.975 14 C -0.512 4.512 15 H 0.028 0.972 16 C 0.007 3.993 17 N -0.955 5.955 18 Si 0.945 3.055 19 H -0.265 1.265 20 H -0.296 1.296 21 H -0.243 1.243 22 C -0.088 4.088 23 C -0.185 4.185 24 C 0.062 3.938 25 O -0.392 6.392 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.342 0.658 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 18.037 -16.618 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.068 3.932 3 C -0.193 4.193 4 C -0.162 4.162 5 C -0.022 4.022 6 H 0.099 0.901 7 N -0.307 5.307 8 C -0.012 4.012 9 H 0.107 0.893 10 C -0.173 4.173 11 C -0.169 4.169 12 C -0.016 4.016 13 H 0.043 0.957 14 C -0.550 4.550 15 H 0.046 0.954 16 C -0.189 4.189 17 N -0.596 5.596 18 Si 0.770 3.230 19 H -0.190 1.190 20 H -0.223 1.223 21 H -0.166 1.166 22 C -0.126 4.126 23 C -0.224 4.224 24 C -0.015 4.015 25 O -0.312 6.312 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.123 18.403 -16.202 25.272 hybrid contribution 0.118 -1.917 -0.210 1.932 sum -6.006 16.487 -16.412 24.026 Atomic orbital electron populations 1.22440 0.94911 1.02746 1.03364 1.21630 0.93805 0.93187 0.84562 1.21765 1.01636 0.92693 1.03230 1.22128 1.01271 0.94646 0.98189 1.21714 0.99328 0.93559 0.87573 0.90076 1.60578 1.05831 1.25785 1.38494 1.22509 0.97013 0.87712 0.94003 0.89259 1.23006 1.00504 0.95423 0.98355 1.22475 0.99361 0.98273 0.96754 1.19747 0.95528 0.93840 0.92506 0.95700 1.21465 1.13686 0.92898 1.26952 0.95378 1.25936 0.98519 0.98446 0.95995 1.70075 1.40403 1.07936 1.41228 0.85856 0.80644 0.77919 0.78598 1.19041 1.22319 1.16619 1.22159 1.00041 0.94485 0.95943 1.23042 1.01850 1.00766 0.96744 1.22585 0.99229 0.81546 0.98150 1.87936 1.74274 1.25136 1.43855 0.90481 0.91526 0.92137 0.92402 0.91561 0.89723 0.90296 0.92088 0.83934 0.92330 0.90358 0.92846 0.94072 0.92736 0.92741 0.93706 0.91765 0.90263 0.92067 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 7.93 71.98 0.57 -2.07 16 2 C 0.11 1.89 1.11 -10.76 -0.01 1.87 16 3 C -0.14 -2.01 8.85 71.98 0.64 -1.38 16 4 C -0.12 -2.43 4.53 30.69 0.14 -2.29 16 5 C 0.09 1.85 2.24 45.04 0.10 1.95 16 6 H 0.08 1.68 5.98 -2.39 -0.01 1.66 16 7 N -0.68 -17.70 6.15 -462.24 -2.84 -20.55 16 8 C 0.10 2.93 3.18 46.22 0.15 3.08 16 9 H 0.09 2.48 7.55 -2.39 -0.02 2.46 16 10 C -0.13 -4.16 5.34 31.67 0.17 -3.99 16 11 C -0.13 -5.22 4.46 31.32 0.14 -5.08 16 12 C 0.00 0.14 2.40 -10.82 -0.03 0.12 16 13 H 0.02 1.15 7.22 -2.39 -0.02 1.14 16 14 C -0.51 -29.63 8.92 25.60 0.23 -29.40 16 15 H 0.03 1.81 7.79 -2.91 -0.02 1.79 16 16 C 0.01 0.42 5.33 84.65 0.45 0.87 16 17 N -0.96 -60.91 13.96 21.45 0.30 -60.62 16 18 Si 0.95 44.89 24.58 68.60 1.69 46.57 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.24 -10.58 6.44 99.48 0.64 -9.94 16 22 C -0.09 -3.44 6.03 31.68 0.19 -3.25 16 23 C -0.18 -3.60 5.15 30.69 0.16 -3.45 16 24 C 0.06 1.09 6.51 72.02 0.47 1.56 16 25 O -0.39 -8.14 10.24 -148.98 -1.53 -9.66 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 28 H 0.06 0.93 4.98 -2.39 -0.01 0.91 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.34 9.11 8.01 -89.69 -0.72 8.39 16 35 H 0.06 1.87 7.81 -2.39 -0.02 1.85 16 36 H 0.08 2.00 6.59 -2.38 -0.02 1.98 16 37 H 0.05 1.96 7.39 -2.39 -0.02 1.94 16 38 H 0.04 1.85 6.41 -2.39 -0.02 1.84 16 39 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.92 7.68 -2.39 -0.02 1.90 16 42 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 43 H 0.08 1.54 5.69 -2.39 -0.01 1.53 16 44 H 0.06 0.96 6.34 -2.39 -0.02 0.95 16 45 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -65.72 326.68 1.15 -64.57 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.17 Total: 21.13 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 3.36 Total: -41.45 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.54 Total: -81.16 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -1.53 Total: -9.66 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.69 Total: 46.57 kcal Total: -65.72 1.15 -64.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601964717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.813 kcal (2) G-P(sol) polarization free energy of solvation -65.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds