Wall clock time and date at job start Mon Mar 30 2020 07:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 110.75080 * 2 1 4 4 C 1.54381 * 110.84796 * 123.47533 * 2 1 3 5 5 O 1.43241 * 107.58804 * 139.54693 * 4 2 1 6 6 C 1.43647 * 109.97100 * 1.71081 * 5 4 2 7 7 H 1.08997 * 110.30964 * 94.58572 * 6 5 4 8 8 C 1.53002 * 110.30633 * 216.65688 * 6 5 4 9 9 N 1.46509 * 109.47144 * 298.54686 * 8 6 5 10 10 C 1.36931 * 119.99605 * 263.31981 * 9 8 6 11 11 H 1.08002 * 120.00190 * 142.32768 * 10 9 8 12 12 C 1.38818 * 120.00502 * 322.32649 * 10 9 8 13 13 N 1.31616 * 119.99951 * 158.45265 * 12 10 9 14 14 Si 1.86804 * 119.99442 * 338.44851 * 12 10 9 15 15 H 1.48500 * 109.46678 * 96.00100 * 14 12 10 16 16 H 1.48503 * 109.46786 * 215.99657 * 14 12 10 17 17 H 1.48498 * 109.47391 * 335.99886 * 14 12 10 18 18 C 1.46497 * 119.99993 * 83.32008 * 9 8 6 19 19 C 1.54268 * 110.02981 * 237.16669 * 18 9 8 20 20 C 1.54890 * 104.19539 * 217.10391 * 19 18 9 21 21 C 1.54895 * 102.74594 * 37.94502 * 20 19 18 22 22 C 1.53868 * 110.03276 * 120.00266 * 18 9 8 23 23 C 1.54940 * 105.13718 * 335.57174 * 6 5 4 24 24 H 1.08995 * 109.47414 * 297.98011 * 1 2 3 25 25 H 1.08999 * 109.47291 * 57.98470 * 1 2 3 26 26 H 1.09003 * 109.47226 * 177.97610 * 1 2 3 27 27 H 1.09010 * 109.47183 * 182.01988 * 3 2 1 28 28 H 1.09002 * 109.47712 * 302.01887 * 3 2 1 29 29 H 1.09003 * 109.47399 * 62.02172 * 3 2 1 30 30 H 1.09002 * 109.83139 * 20.03301 * 4 2 1 31 31 H 1.08998 * 109.90111 * 259.10312 * 4 2 1 32 32 H 1.09003 * 109.46911 * 178.54859 * 8 6 5 33 33 H 1.09000 * 109.47250 * 58.54263 * 8 6 5 34 34 H 0.97009 * 119.99457 * 180.02562 * 13 12 10 35 35 H 1.09000 * 110.05778 * 358.58401 * 18 9 8 36 36 H 1.08998 * 110.48590 * 335.78513 * 19 18 9 37 37 H 1.09006 * 110.48722 * 98.42723 * 19 18 9 38 38 H 1.08993 * 110.75548 * 279.62845 * 20 19 18 39 39 H 1.08994 * 110.75341 * 156.25545 * 20 19 18 40 40 H 1.09001 * 110.48205 * 203.37846 * 21 20 19 41 41 H 1.08996 * 110.60163 * 80.78939 * 21 20 19 42 42 H 1.09000 * 110.03313 * 238.57378 * 22 18 9 43 43 H 1.09005 * 110.03369 * 359.94438 * 22 18 9 44 44 H 1.08999 * 111.12533 * 154.36636 * 23 6 5 45 45 H 1.09005 * 111.12435 * 278.53063 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0720 1.4307 0.0000 4 6 2.0794 -0.7958 1.2034 5 8 3.2044 -1.5539 0.7437 6 6 3.4464 -1.2795 -0.6454 7 1 4.1947 -0.4942 -0.7512 8 6 3.9049 -2.5493 -1.3654 9 7 5.1605 -3.0193 -0.7746 10 6 6.3560 -2.6899 -1.3556 11 1 7.2127 -2.4647 -0.7378 12 6 6.4668 -2.6454 -2.7386 13 7 7.4299 -1.9453 -3.2994 14 14 5.2489 -3.5792 -3.8036 15 1 4.1646 -2.6615 -4.2365 16 1 5.9475 -4.1182 -4.9980 17 1 4.6664 -4.7002 -3.0230 18 6 5.1371 -3.8417 0.4375 19 6 5.9685 -3.1685 1.5489 20 6 6.6556 -4.3499 2.2778 21 6 7.0019 -5.3135 1.1156 22 6 5.7941 -5.2055 0.1620 23 6 2.0827 -0.8052 -1.2076 24 1 -0.3634 0.4821 0.9075 25 1 -0.3634 0.5448 -0.8713 26 1 -0.3634 -1.0270 -0.0363 27 1 3.1613 1.4066 -0.0362 28 1 1.6913 1.9636 -0.8713 29 1 1.7500 1.9413 0.9076 30 1 1.3107 -1.4685 1.5839 31 1 2.3925 -0.1095 1.9902 32 1 4.0596 -2.3319 -2.4223 33 1 3.1428 -3.3216 -1.2610 34 1 7.5071 -1.9139 -4.2659 35 1 4.1098 -3.9832 0.7734 36 1 6.7142 -2.5014 1.1165 37 1 5.3192 -2.6233 2.2341 38 1 5.9689 -4.8225 2.9799 39 1 7.5605 -4.0166 2.7858 40 1 7.1067 -6.3338 1.4844 41 1 7.9149 -4.9951 0.6124 42 1 5.0858 -6.0089 0.3641 43 1 6.1296 -5.2559 -0.8739 44 1 2.2185 -0.1638 -2.0784 45 1 1.4385 -1.6525 -1.4427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602783346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:42 Heat of formation + Delta-G solvation = -41.561385 kcal Electronic energy + Delta-G solvation = -22359.814121 eV Core-core repulsion = 19377.141299 eV Total energy + Delta-G solvation = -2982.672822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.58922 -37.65447 -34.66956 -33.91142 -31.55271 -30.07202 -27.76990 -27.37415 -26.90992 -26.04978 -25.12687 -22.46094 -20.74809 -19.84913 -19.14905 -18.76983 -16.48477 -15.99463 -15.44350 -15.13183 -14.88318 -14.38336 -14.21040 -13.81638 -13.37856 -13.27183 -13.02944 -12.66288 -12.56112 -12.36489 -12.10207 -11.92885 -11.55889 -11.39045 -11.03237 -10.88286 -10.73875 -10.53132 -10.51513 -10.40277 -10.31015 -10.21751 -10.02039 -9.90196 -9.76837 -9.59406 -9.26989 -8.92090 -8.44295 -6.66155 -5.92961 -3.31778 3.30583 3.48675 3.54707 4.27598 4.56004 4.58695 4.82491 5.03576 5.04689 5.34563 5.36587 5.45920 5.53492 5.54928 5.57736 5.66720 5.70790 5.77462 5.81970 5.89557 5.97104 6.02110 6.08856 6.18803 6.21364 6.23270 6.31791 6.37248 6.38361 6.43387 6.52888 6.58799 6.62820 6.67559 6.73188 6.86770 6.94737 7.10201 7.31102 7.33266 7.65466 8.15600 8.50887 9.11389 9.80782 10.25114 11.23252 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.008128 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.542718 B = 3444.224096 C = 4549.713035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 C -0.136 4.136 4 C 0.060 3.940 5 O -0.364 6.364 6 C 0.068 3.932 7 H 0.073 0.927 8 C 0.141 3.859 9 N -0.594 5.594 10 C -0.251 4.251 11 H 0.081 0.919 12 C 0.032 3.968 13 N -0.904 5.904 14 Si 0.868 3.132 15 H -0.289 1.289 16 H -0.303 1.303 17 H -0.267 1.267 18 C 0.184 3.816 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.137 4.137 23 C -0.146 4.146 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 1.431 7.678 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 C -0.193 4.193 4 C -0.018 4.018 5 O -0.283 6.283 6 C 0.009 3.991 7 H 0.091 0.909 8 C 0.014 3.986 9 N -0.314 5.314 10 C -0.380 4.380 11 H 0.099 0.901 12 C -0.168 4.168 13 N -0.546 5.546 14 Si 0.699 3.301 15 H -0.217 1.217 16 H -0.231 1.231 17 H -0.192 1.192 18 C 0.077 3.923 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.177 4.177 23 C -0.184 4.184 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.208 1.321 7.639 13.628 hybrid contribution -0.797 -0.243 -0.937 1.254 sum -12.004 1.078 6.702 13.791 Atomic orbital electron populations 1.21733 0.93855 1.01821 1.01617 1.22101 0.95935 0.96214 0.95972 1.21796 1.01725 0.94397 1.01424 1.23137 0.89271 0.93832 0.95513 1.88489 1.47869 1.66166 1.25784 1.23830 0.94362 1.00058 0.80872 0.90908 1.21397 0.88669 0.92381 0.96131 1.44152 1.01765 1.56885 1.28584 1.18732 0.89421 1.40499 0.89363 0.90107 1.25488 0.96211 0.98251 0.96828 1.69864 1.34445 1.39987 1.10302 0.87041 0.80926 0.81942 0.80216 1.21685 1.23074 1.19170 1.20923 0.96309 0.88482 0.86595 1.22692 0.99552 0.97100 0.97204 1.22441 0.99273 0.97365 0.97098 1.22234 0.99230 0.97580 0.96367 1.22628 0.96411 0.97892 1.00733 1.23431 0.97724 0.99616 0.97656 0.92681 0.92505 0.92478 0.91901 0.92558 0.92678 0.92319 0.92393 0.91413 0.94344 0.92918 0.92620 0.90664 0.92900 0.92824 0.92896 0.93522 0.91724 0.94042 0.90631 0.90423 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.50 37.16 0.32 -1.06 16 2 C -0.10 -1.31 0.94 -152.56 -0.14 -1.45 16 3 C -0.14 -1.65 8.46 37.15 0.31 -1.33 16 4 C 0.06 0.86 6.99 37.88 0.26 1.12 16 5 O -0.36 -6.70 9.89 -35.23 -0.35 -7.05 16 6 C 0.07 1.30 3.42 -25.71 -0.09 1.21 16 7 H 0.07 1.55 7.77 -51.93 -0.40 1.14 16 8 C 0.14 3.05 3.99 -4.04 -0.02 3.04 16 9 N -0.59 -13.97 2.01 -164.39 -0.33 -14.30 16 10 C -0.25 -6.83 8.48 -15.06 -0.13 -6.96 16 11 H 0.08 2.40 6.76 -52.49 -0.35 2.05 16 12 C 0.03 0.90 5.27 -17.43 -0.09 0.80 16 13 N -0.90 -27.29 13.97 55.49 0.78 -26.51 16 14 Si 0.87 21.91 24.98 -169.99 -4.25 17.66 16 15 H -0.29 -7.03 6.71 56.52 0.38 -6.65 16 16 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 18 C 0.18 3.83 2.70 -66.82 -0.18 3.65 16 19 C -0.13 -2.48 6.41 -25.07 -0.16 -2.64 16 20 C -0.12 -2.08 6.91 -24.73 -0.17 -2.25 16 21 C -0.12 -2.07 6.83 -25.07 -0.17 -2.24 16 22 C -0.14 -2.74 6.28 -25.62 -0.16 -2.90 16 23 C -0.15 -2.22 5.53 -24.48 -0.14 -2.35 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 27 H 0.06 0.87 7.53 -51.92 -0.39 0.48 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.77 7.81 -51.93 -0.41 0.37 16 31 H 0.06 0.78 7.84 -51.93 -0.41 0.38 16 32 H 0.07 1.59 3.60 -51.93 -0.19 1.40 16 33 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.06 1.14 7.56 -51.93 -0.39 0.74 16 36 H 0.07 1.68 6.29 -51.93 -0.33 1.35 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.72 7.37 -51.93 -0.38 1.34 16 44 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 45 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -29.14 336.91 -7.93 -37.07 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.31 Total: 1.41 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.55 Total: -13.37 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.45 Total: -40.81 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.35 Total: -7.05 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.25 Total: 17.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.14 -7.93 -37.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602783346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.491 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds