Wall clock time and date at job start Mon Mar 30 2020 07:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 110.75080 * 2 1 4 4 C 1.54381 * 110.84796 * 123.47533 * 2 1 3 5 5 O 1.43241 * 107.58804 * 139.54693 * 4 2 1 6 6 C 1.43647 * 109.97100 * 1.71081 * 5 4 2 7 7 H 1.08997 * 110.30964 * 94.58572 * 6 5 4 8 8 C 1.53002 * 110.30633 * 216.65688 * 6 5 4 9 9 N 1.46509 * 109.47144 * 298.54686 * 8 6 5 10 10 C 1.36931 * 119.99605 * 263.31981 * 9 8 6 11 11 H 1.08002 * 120.00190 * 142.32768 * 10 9 8 12 12 C 1.38818 * 120.00502 * 322.32649 * 10 9 8 13 13 N 1.31616 * 119.99951 * 158.45265 * 12 10 9 14 14 Si 1.86804 * 119.99442 * 338.44851 * 12 10 9 15 15 H 1.48500 * 109.46678 * 96.00100 * 14 12 10 16 16 H 1.48503 * 109.46786 * 215.99657 * 14 12 10 17 17 H 1.48498 * 109.47391 * 335.99886 * 14 12 10 18 18 C 1.46497 * 119.99993 * 83.32008 * 9 8 6 19 19 C 1.54268 * 110.02981 * 237.16669 * 18 9 8 20 20 C 1.54890 * 104.19539 * 217.10391 * 19 18 9 21 21 C 1.54895 * 102.74594 * 37.94502 * 20 19 18 22 22 C 1.53868 * 110.03276 * 120.00266 * 18 9 8 23 23 C 1.54940 * 105.13718 * 335.57174 * 6 5 4 24 24 H 1.08995 * 109.47414 * 297.98011 * 1 2 3 25 25 H 1.08999 * 109.47291 * 57.98470 * 1 2 3 26 26 H 1.09003 * 109.47226 * 177.97610 * 1 2 3 27 27 H 1.09010 * 109.47183 * 182.01988 * 3 2 1 28 28 H 1.09002 * 109.47712 * 302.01887 * 3 2 1 29 29 H 1.09003 * 109.47399 * 62.02172 * 3 2 1 30 30 H 1.09002 * 109.83139 * 20.03301 * 4 2 1 31 31 H 1.08998 * 109.90111 * 259.10312 * 4 2 1 32 32 H 1.09003 * 109.46911 * 178.54859 * 8 6 5 33 33 H 1.09000 * 109.47250 * 58.54263 * 8 6 5 34 34 H 0.97009 * 119.99457 * 180.02562 * 13 12 10 35 35 H 1.09000 * 110.05778 * 358.58401 * 18 9 8 36 36 H 1.08998 * 110.48590 * 335.78513 * 19 18 9 37 37 H 1.09006 * 110.48722 * 98.42723 * 19 18 9 38 38 H 1.08993 * 110.75548 * 279.62845 * 20 19 18 39 39 H 1.08994 * 110.75341 * 156.25545 * 20 19 18 40 40 H 1.09001 * 110.48205 * 203.37846 * 21 20 19 41 41 H 1.08996 * 110.60163 * 80.78939 * 21 20 19 42 42 H 1.09000 * 110.03313 * 238.57378 * 22 18 9 43 43 H 1.09005 * 110.03369 * 359.94438 * 22 18 9 44 44 H 1.08999 * 111.12533 * 154.36636 * 23 6 5 45 45 H 1.09005 * 111.12435 * 278.53063 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0720 1.4307 0.0000 4 6 2.0794 -0.7958 1.2034 5 8 3.2044 -1.5539 0.7437 6 6 3.4464 -1.2795 -0.6454 7 1 4.1947 -0.4942 -0.7512 8 6 3.9049 -2.5493 -1.3654 9 7 5.1605 -3.0193 -0.7746 10 6 6.3560 -2.6899 -1.3556 11 1 7.2127 -2.4647 -0.7378 12 6 6.4668 -2.6454 -2.7386 13 7 7.4299 -1.9453 -3.2994 14 14 5.2489 -3.5792 -3.8036 15 1 4.1646 -2.6615 -4.2365 16 1 5.9475 -4.1182 -4.9980 17 1 4.6664 -4.7002 -3.0230 18 6 5.1371 -3.8417 0.4375 19 6 5.9685 -3.1685 1.5489 20 6 6.6556 -4.3499 2.2778 21 6 7.0019 -5.3135 1.1156 22 6 5.7941 -5.2055 0.1620 23 6 2.0827 -0.8052 -1.2076 24 1 -0.3634 0.4821 0.9075 25 1 -0.3634 0.5448 -0.8713 26 1 -0.3634 -1.0270 -0.0363 27 1 3.1613 1.4066 -0.0362 28 1 1.6913 1.9636 -0.8713 29 1 1.7500 1.9413 0.9076 30 1 1.3107 -1.4685 1.5839 31 1 2.3925 -0.1095 1.9902 32 1 4.0596 -2.3319 -2.4223 33 1 3.1428 -3.3216 -1.2610 34 1 7.5071 -1.9139 -4.2659 35 1 4.1098 -3.9832 0.7734 36 1 6.7142 -2.5014 1.1165 37 1 5.3192 -2.6233 2.2341 38 1 5.9689 -4.8225 2.9799 39 1 7.5605 -4.0166 2.7858 40 1 7.1067 -6.3338 1.4844 41 1 7.9149 -4.9951 0.6124 42 1 5.0858 -6.0089 0.3641 43 1 6.1296 -5.2559 -0.8739 44 1 2.2185 -0.1638 -2.0784 45 1 1.4385 -1.6525 -1.4427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602783346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:42 Heat of formation + Delta-G solvation = -58.001519 kcal Electronic energy + Delta-G solvation = -22360.527018 eV Core-core repulsion = 19377.141299 eV Total energy + Delta-G solvation = -2983.385720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.89131 -39.28296 -36.25665 -35.26379 -33.59873 -31.59547 -29.33408 -28.54113 -28.26089 -27.42258 -26.61325 -24.26570 -22.27653 -21.33529 -20.56187 -20.27038 -18.37471 -17.53130 -17.06967 -16.71022 -16.40397 -15.86460 -15.63182 -15.14365 -14.91116 -14.58288 -14.34562 -14.10634 -14.02327 -13.97965 -13.78908 -13.09862 -12.99983 -12.68818 -12.56754 -12.50080 -12.19435 -12.09565 -11.91466 -11.79092 -11.70268 -11.69125 -11.59149 -11.50440 -11.33707 -11.23688 -11.03728 -10.60011 -10.29549 -8.61955 -8.13782 -5.48907 1.27040 1.40247 1.51427 2.43972 2.92279 3.14913 3.40399 3.48176 3.82834 3.91182 4.00774 4.03720 4.21222 4.25475 4.31675 4.36516 4.45193 4.69948 4.72354 4.75405 4.76663 4.78407 4.80020 4.86299 4.92963 4.95888 4.98479 4.99484 5.02856 5.05415 5.17790 5.19697 5.24156 5.25809 5.30956 5.34168 5.47295 5.58604 5.65430 5.67825 6.03907 6.26995 6.32199 7.08555 7.73587 8.17255 9.06846 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.008128 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.542718 B = 3444.224096 C = 4549.713035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 C -0.136 4.136 4 C 0.051 3.949 5 O -0.384 6.384 6 C 0.076 3.924 7 H 0.036 0.964 8 C 0.135 3.865 9 N -0.604 5.604 10 C -0.229 4.229 11 H 0.041 0.959 12 C -0.024 4.024 13 N -0.954 5.954 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.312 1.312 17 H -0.259 1.259 18 C 0.178 3.822 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.137 4.137 23 C -0.142 4.142 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.079 0.921 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.579 0.519 9.179 17.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 C -0.193 4.193 4 C -0.025 4.025 5 O -0.304 6.304 6 C 0.016 3.984 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.325 5.325 10 C -0.359 4.359 11 H 0.059 0.941 12 C -0.219 4.219 13 N -0.599 5.599 14 Si 0.760 3.240 15 H -0.201 1.201 16 H -0.241 1.241 17 H -0.183 1.183 18 C 0.073 3.927 19 C -0.161 4.161 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.176 4.176 23 C -0.180 4.180 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.398 0.404 9.174 17.077 hybrid contribution 0.199 0.087 -1.266 1.284 sum -14.199 0.491 7.908 16.260 Atomic orbital electron populations 1.21702 0.91221 1.02557 1.02985 1.22093 0.97871 0.95732 0.93738 1.21801 0.99979 0.94532 1.02981 1.23403 0.88548 0.94351 0.96216 1.88441 1.49744 1.67030 1.25162 1.23423 0.95746 0.97415 0.81806 0.94550 1.21453 0.88108 0.94091 0.95367 1.44253 1.01167 1.57804 1.29238 1.18501 0.89854 1.38525 0.89032 0.94093 1.26015 0.98411 0.99348 0.98114 1.69993 1.37250 1.42276 1.10384 0.86016 0.79078 0.80821 0.78064 1.20067 1.24099 1.18268 1.21118 0.97252 0.88738 0.85633 1.22570 0.98661 0.97671 0.97174 1.22407 1.00082 0.95628 0.96885 1.22210 0.97171 0.99653 0.96105 1.22598 0.97788 0.98077 0.99175 1.23410 0.95525 1.00462 0.98626 0.90992 0.91561 0.92046 0.94615 0.91422 0.90781 0.90441 0.91728 0.93308 0.92611 0.93152 0.91419 0.94612 0.92348 0.89908 0.91792 0.90315 0.94211 0.91389 0.94137 0.90266 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.50 71.98 0.61 -1.52 16 2 C -0.09 -2.18 0.94 -50.92 -0.05 -2.23 16 3 C -0.14 -3.04 8.46 71.98 0.61 -2.43 16 4 C 0.05 1.35 6.99 72.45 0.51 1.85 16 5 O -0.38 -13.76 9.89 -148.98 -1.47 -15.23 16 6 C 0.08 2.88 3.42 31.26 0.11 2.99 16 7 H 0.04 1.63 7.77 -2.39 -0.02 1.61 16 8 C 0.14 5.84 3.99 86.38 0.34 6.18 16 9 N -0.60 -28.88 2.01 -674.00 -1.35 -30.23 16 10 C -0.23 -13.05 8.48 84.04 0.71 -12.34 16 11 H 0.04 2.63 6.76 -2.91 -0.02 2.61 16 12 C -0.02 -1.40 5.27 84.86 0.45 -0.95 16 13 N -0.95 -60.39 13.97 21.65 0.30 -60.08 16 14 Si 0.93 46.49 24.98 68.60 1.71 48.20 16 15 H -0.27 -12.85 6.71 99.48 0.67 -12.18 16 16 H -0.31 -15.95 7.11 99.48 0.71 -15.24 16 17 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 18 C 0.18 7.33 2.70 45.71 0.12 7.46 16 19 C -0.12 -4.76 6.41 31.67 0.20 -4.56 16 20 C -0.11 -3.54 6.91 31.89 0.22 -3.32 16 21 C -0.11 -3.88 6.83 31.67 0.22 -3.66 16 22 C -0.14 -5.31 6.28 31.32 0.20 -5.11 16 23 C -0.14 -4.08 5.53 32.05 0.18 -3.90 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 27 H 0.03 0.98 7.53 -2.38 -0.02 0.96 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.76 7.81 -2.39 -0.02 1.74 16 31 H 0.06 1.61 7.84 -2.39 -0.02 1.59 16 32 H 0.05 2.28 3.60 -2.39 -0.01 2.27 16 33 H 0.06 2.20 8.09 -2.39 -0.02 2.18 16 34 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 35 H 0.07 2.62 7.56 -2.39 -0.02 2.61 16 36 H 0.04 1.67 6.29 -2.39 -0.02 1.65 16 37 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.04 1.85 7.37 -2.38 -0.02 1.83 16 44 H 0.08 2.24 8.04 -2.39 -0.02 2.22 16 45 H 0.09 2.26 7.94 -2.38 -0.02 2.24 16 Total: -1.00 -66.35 336.91 4.50 -61.85 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.89 Total: 17.04 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 4.43 Total: -21.54 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -1.05 Total: -90.32 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -1.47 Total: -15.23 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.71 Total: 48.20 kcal Total: -66.35 4.50 -61.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602783346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.846 kcal (2) G-P(sol) polarization free energy of solvation -66.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds