Wall clock time and date at job start Mon Mar 30 2020 07:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 110.54085 * 2 1 4 4 C 1.54106 * 110.48939 * 122.61277 * 2 1 3 5 5 O 1.43744 * 107.29239 * 120.70372 * 4 2 1 6 6 C 1.44382 * 106.97619 * 333.49023 * 5 4 2 7 7 H 1.08998 * 110.61867 * 281.55533 * 6 5 4 8 8 C 1.52999 * 110.61560 * 158.71869 * 6 5 4 9 9 N 1.46499 * 109.47519 * 68.57831 * 8 6 5 10 10 C 1.36937 * 119.99837 * 89.99621 * 9 8 6 11 11 H 1.08005 * 119.99903 * 217.05302 * 10 9 8 12 12 C 1.38816 * 120.00120 * 37.05531 * 10 9 8 13 13 N 1.31622 * 119.99802 * 21.41189 * 12 10 9 14 14 Si 1.86796 * 120.00132 * 201.41248 * 12 10 9 15 15 H 1.48494 * 109.47137 * 89.99876 * 14 12 10 16 16 H 1.48505 * 109.47066 * 210.00136 * 14 12 10 17 17 H 1.48504 * 109.47252 * 329.99984 * 14 12 10 18 18 C 1.46497 * 120.00041 * 270.00053 * 9 8 6 19 19 C 1.54270 * 110.03311 * 241.71274 * 18 9 8 20 20 C 1.54960 * 104.15989 * 217.13945 * 19 18 9 21 21 C 1.54894 * 102.78139 * 37.88165 * 20 19 18 22 22 C 1.53869 * 110.03243 * 124.49368 * 18 9 8 23 23 C 1.54813 * 110.48732 * 237.37938 * 2 1 3 24 24 H 1.09000 * 109.47352 * 298.83838 * 1 2 3 25 25 H 1.09003 * 109.47251 * 58.83923 * 1 2 3 26 26 H 1.09003 * 109.46884 * 178.84083 * 1 2 3 27 27 H 1.09002 * 109.47495 * 181.16670 * 3 2 1 28 28 H 1.09002 * 109.47052 * 301.15700 * 3 2 1 29 29 H 1.08992 * 109.47660 * 61.16180 * 3 2 1 30 30 H 1.09002 * 109.87348 * 1.28355 * 4 2 1 31 31 H 1.08995 * 109.87605 * 240.13142 * 4 2 1 32 32 H 1.09000 * 109.47025 * 188.58287 * 8 6 5 33 33 H 1.09001 * 109.47269 * 308.57484 * 8 6 5 34 34 H 0.96996 * 119.99812 * 174.94597 * 13 12 10 35 35 H 1.09004 * 110.02039 * 3.10009 * 18 9 8 36 36 H 1.09003 * 110.48121 * 335.78355 * 19 18 9 37 37 H 1.08999 * 110.48844 * 98.42462 * 19 18 9 38 38 H 1.09007 * 110.71691 * 279.57044 * 20 19 18 39 39 H 1.08997 * 110.92671 * 156.29707 * 20 19 18 40 40 H 1.08993 * 110.48990 * 203.40534 * 21 20 19 41 41 H 1.09001 * 110.48037 * 80.76169 * 21 20 19 42 42 H 1.09003 * 110.03132 * 238.57066 * 22 18 9 43 43 H 1.09003 * 110.03627 * 0.02562 * 22 18 9 44 44 H 1.09004 * 110.90447 * 144.00687 * 23 2 1 45 45 H 1.08996 * 110.90676 * 20.40692 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 6 2.0694 -0.7780 1.2160 5 8 2.8754 -1.8555 0.7105 6 6 2.3780 -2.1716 -0.6076 7 1 1.4698 -2.7707 -0.5417 8 6 3.4451 -2.9022 -1.4252 9 7 3.6656 -4.2356 -0.8599 10 6 2.9251 -5.2985 -1.3037 11 1 2.6089 -6.0636 -0.6101 12 6 2.5807 -5.3926 -2.6452 13 7 3.2780 -4.7401 -3.5509 14 14 1.1277 -6.4452 -3.1649 15 1 -0.1072 -5.6205 -3.1618 16 1 1.3648 -6.9764 -4.5312 17 1 0.9703 -7.5756 -2.2147 18 6 4.6784 -4.4319 0.1804 19 6 5.7652 -5.4070 -0.3175 20 6 6.1308 -6.2398 0.9372 21 6 4.7608 -6.4268 1.6354 22 6 4.0403 -5.0796 1.4217 23 6 2.0718 -0.7818 -1.2215 24 1 -0.3634 0.4957 0.9002 25 1 -0.3634 0.5318 -0.8794 26 1 -0.3633 -1.0275 -0.0208 27 1 3.1564 1.4125 -0.0209 28 1 1.6964 1.9595 -0.8794 29 1 1.7302 1.9469 0.9001 30 1 1.2391 -1.1778 1.7981 31 1 2.6773 -0.1201 1.8369 32 1 3.1102 -2.9963 -2.4582 33 1 4.3763 -2.3364 -1.3954 34 1 3.0843 -4.8630 -4.4934 35 1 5.1287 -3.4759 0.4478 36 1 5.3685 -6.0524 -1.1012 37 1 6.6346 -4.8574 -0.6782 38 1 6.8191 -5.6891 1.5784 39 1 6.5552 -7.2032 0.6549 40 1 4.8982 -6.6215 2.6990 41 1 4.2017 -7.2370 1.1674 42 1 4.1816 -4.4384 2.2917 43 1 2.9772 -5.2484 1.2500 44 1 2.9797 -0.3187 -1.6080 45 1 1.3140 -0.8592 -2.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602783349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:46 Heat of formation + Delta-G solvation = -48.851554 kcal Electronic energy + Delta-G solvation = -22213.796065 eV Core-core repulsion = 19230.807117 eV Total energy + Delta-G solvation = -2982.988948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.36314 -37.49754 -34.51378 -33.80805 -31.16463 -29.80965 -27.70062 -27.28562 -26.55362 -25.81272 -25.08580 -22.47736 -20.23602 -19.75715 -19.03927 -18.88361 -16.31015 -15.70510 -15.20436 -14.90505 -14.59084 -14.36868 -14.06165 -13.73930 -13.37634 -13.07507 -12.94721 -12.71248 -12.42362 -12.33863 -11.76630 -11.38848 -11.17247 -11.10297 -10.90435 -10.78732 -10.71545 -10.44371 -10.33640 -10.28723 -10.23610 -10.12897 -10.05460 -9.88987 -9.73614 -9.58704 -9.27487 -8.87199 -8.42397 -6.41050 -5.74324 -3.25902 3.37128 3.45348 3.46910 4.50181 4.55201 4.79757 4.95346 5.16247 5.31452 5.40492 5.53907 5.60653 5.61390 5.64049 5.68117 5.78271 5.80765 5.89222 5.96115 6.06450 6.08209 6.10547 6.30082 6.31340 6.36272 6.39820 6.46762 6.49903 6.57751 6.60948 6.67363 6.73525 6.75612 6.83446 7.01293 7.10182 7.15758 7.39111 7.50504 7.56934 7.80614 7.93799 8.62223 9.28216 9.92411 10.52243 11.28240 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014643 B = 0.007772 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.754295 B = 3601.842989 C = 4820.667029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.133 4.133 4 C 0.055 3.945 5 O -0.366 6.366 6 C 0.063 3.937 7 H 0.062 0.938 8 C 0.156 3.844 9 N -0.574 5.574 10 C -0.244 4.244 11 H 0.061 0.939 12 C 0.009 3.991 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.288 1.288 16 H -0.292 1.292 17 H -0.278 1.278 18 C 0.179 3.821 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.139 4.139 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.028 0.972 34 H 0.254 0.746 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.323 7.679 7.007 10.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 C -0.190 4.190 4 C -0.022 4.022 5 O -0.285 6.285 6 C 0.003 3.997 7 H 0.080 0.920 8 C 0.029 3.971 9 N -0.292 5.292 10 C -0.374 4.374 11 H 0.079 0.921 12 C -0.190 4.190 13 N -0.537 5.537 14 Si 0.723 3.277 15 H -0.215 1.215 16 H -0.219 1.219 17 H -0.204 1.204 18 C 0.071 3.929 19 C -0.172 4.172 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.165 4.165 23 C -0.178 4.178 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.198 7.615 6.924 10.362 hybrid contribution -1.062 -0.395 -0.423 1.210 sum -2.260 7.220 6.501 9.975 Atomic orbital electron populations 1.21835 0.94129 1.02011 1.01281 1.21954 0.95895 0.96049 0.96531 1.21807 1.01003 0.94932 1.01249 1.23152 0.94669 0.89327 0.95077 1.88940 1.55540 1.51340 1.32688 1.24183 0.99849 0.93444 0.82185 0.91988 1.21065 0.93583 0.84162 0.98312 1.43838 1.39349 1.03456 1.42533 1.18976 1.25050 1.02709 0.90715 0.92115 1.25153 0.98995 0.98736 0.96140 1.69871 1.39198 1.44588 1.00082 0.86445 0.83377 0.80280 0.77643 1.21498 1.21882 1.20376 1.20957 0.88404 0.95126 0.88387 1.22852 0.98227 0.98882 0.97225 1.22438 0.96582 0.99153 0.97947 1.22275 0.96469 0.98717 0.98195 1.22473 1.00952 0.94950 0.98167 1.23250 1.01029 0.96742 0.96767 0.92906 0.92648 0.92322 0.92368 0.92727 0.92989 0.93514 0.91139 0.87453 0.95317 0.93550 0.93147 0.89926 0.93875 0.92975 0.93068 0.93605 0.92165 0.93781 0.91269 0.90950 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.26 37.16 0.31 -1.38 16 2 C -0.10 -1.45 0.99 -152.98 -0.15 -1.60 16 3 C -0.13 -1.55 8.27 37.16 0.31 -1.24 16 4 C 0.06 0.86 7.04 37.74 0.27 1.13 16 5 O -0.37 -7.22 11.07 -35.23 -0.39 -7.61 16 6 C 0.06 1.27 3.57 -25.68 -0.09 1.18 16 7 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 8 C 0.16 3.62 5.01 -4.04 -0.02 3.60 16 9 N -0.57 -14.00 2.39 -164.39 -0.39 -14.39 16 10 C -0.24 -6.46 7.77 -15.06 -0.12 -6.57 16 11 H 0.06 1.64 6.97 -52.48 -0.37 1.27 16 12 C 0.01 0.24 4.96 -17.43 -0.09 0.16 16 13 N -0.89 -24.96 11.43 55.49 0.63 -24.33 16 14 Si 0.89 21.34 29.61 -169.99 -5.03 16.31 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.18 3.92 3.26 -66.81 -0.22 3.70 16 19 C -0.13 -2.78 6.43 -25.03 -0.16 -2.94 16 20 C -0.12 -2.16 6.91 -24.70 -0.17 -2.33 16 21 C -0.12 -2.12 6.83 -25.07 -0.17 -2.29 16 22 C -0.13 -2.53 6.15 -25.62 -0.16 -2.69 16 23 C -0.14 -2.31 5.70 -24.72 -0.14 -2.45 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.70 7.69 -51.93 -0.40 0.30 16 31 H 0.07 0.99 7.69 -51.93 -0.40 0.59 16 32 H 0.11 2.77 5.48 -51.93 -0.28 2.49 16 33 H 0.03 0.66 7.96 -51.93 -0.41 0.25 16 34 H 0.25 6.92 8.32 -40.82 -0.34 6.58 16 35 H 0.05 1.11 7.85 -51.93 -0.41 0.70 16 36 H 0.08 2.00 7.19 -51.93 -0.37 1.63 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.53 6.75 -51.93 -0.35 1.18 16 44 H 0.07 1.18 7.78 -51.93 -0.40 0.78 16 45 H 0.07 1.17 7.86 -51.93 -0.41 0.76 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -27.45 344.33 -9.03 -36.48 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.44 Total: 2.08 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.61 Total: -13.74 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.24 Total: -38.72 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.39 Total: -7.61 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.45 -9.03 -36.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602783349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.368 kcal (2) G-P(sol) polarization free energy of solvation -27.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds