Wall clock time and date at job start Mon Mar 30 2020 07:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 110.54085 * 2 1 4 4 C 1.54106 * 110.48939 * 122.61277 * 2 1 3 5 5 O 1.43744 * 107.29239 * 120.70372 * 4 2 1 6 6 C 1.44382 * 106.97619 * 333.49023 * 5 4 2 7 7 H 1.08998 * 110.61867 * 281.55533 * 6 5 4 8 8 C 1.52999 * 110.61560 * 158.71869 * 6 5 4 9 9 N 1.46499 * 109.47519 * 68.57831 * 8 6 5 10 10 C 1.36937 * 119.99837 * 89.99621 * 9 8 6 11 11 H 1.08005 * 119.99903 * 217.05302 * 10 9 8 12 12 C 1.38816 * 120.00120 * 37.05531 * 10 9 8 13 13 N 1.31622 * 119.99802 * 21.41189 * 12 10 9 14 14 Si 1.86796 * 120.00132 * 201.41248 * 12 10 9 15 15 H 1.48494 * 109.47137 * 89.99876 * 14 12 10 16 16 H 1.48505 * 109.47066 * 210.00136 * 14 12 10 17 17 H 1.48504 * 109.47252 * 329.99984 * 14 12 10 18 18 C 1.46497 * 120.00041 * 270.00053 * 9 8 6 19 19 C 1.54270 * 110.03311 * 241.71274 * 18 9 8 20 20 C 1.54960 * 104.15989 * 217.13945 * 19 18 9 21 21 C 1.54894 * 102.78139 * 37.88165 * 20 19 18 22 22 C 1.53869 * 110.03243 * 124.49368 * 18 9 8 23 23 C 1.54813 * 110.48732 * 237.37938 * 2 1 3 24 24 H 1.09000 * 109.47352 * 298.83838 * 1 2 3 25 25 H 1.09003 * 109.47251 * 58.83923 * 1 2 3 26 26 H 1.09003 * 109.46884 * 178.84083 * 1 2 3 27 27 H 1.09002 * 109.47495 * 181.16670 * 3 2 1 28 28 H 1.09002 * 109.47052 * 301.15700 * 3 2 1 29 29 H 1.08992 * 109.47660 * 61.16180 * 3 2 1 30 30 H 1.09002 * 109.87348 * 1.28355 * 4 2 1 31 31 H 1.08995 * 109.87605 * 240.13142 * 4 2 1 32 32 H 1.09000 * 109.47025 * 188.58287 * 8 6 5 33 33 H 1.09001 * 109.47269 * 308.57484 * 8 6 5 34 34 H 0.96996 * 119.99812 * 174.94597 * 13 12 10 35 35 H 1.09004 * 110.02039 * 3.10009 * 18 9 8 36 36 H 1.09003 * 110.48121 * 335.78355 * 19 18 9 37 37 H 1.08999 * 110.48844 * 98.42462 * 19 18 9 38 38 H 1.09007 * 110.71691 * 279.57044 * 20 19 18 39 39 H 1.08997 * 110.92671 * 156.29707 * 20 19 18 40 40 H 1.08993 * 110.48990 * 203.40534 * 21 20 19 41 41 H 1.09001 * 110.48037 * 80.76169 * 21 20 19 42 42 H 1.09003 * 110.03132 * 238.57066 * 22 18 9 43 43 H 1.09003 * 110.03627 * 0.02562 * 22 18 9 44 44 H 1.09004 * 110.90447 * 144.00687 * 23 2 1 45 45 H 1.08996 * 110.90676 * 20.40692 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 6 2.0694 -0.7780 1.2160 5 8 2.8754 -1.8555 0.7105 6 6 2.3780 -2.1716 -0.6076 7 1 1.4698 -2.7707 -0.5417 8 6 3.4451 -2.9022 -1.4252 9 7 3.6656 -4.2356 -0.8599 10 6 2.9251 -5.2985 -1.3037 11 1 2.6089 -6.0636 -0.6101 12 6 2.5807 -5.3926 -2.6452 13 7 3.2780 -4.7401 -3.5509 14 14 1.1277 -6.4452 -3.1649 15 1 -0.1072 -5.6205 -3.1618 16 1 1.3648 -6.9764 -4.5312 17 1 0.9703 -7.5756 -2.2147 18 6 4.6784 -4.4319 0.1804 19 6 5.7652 -5.4070 -0.3175 20 6 6.1308 -6.2398 0.9372 21 6 4.7608 -6.4268 1.6354 22 6 4.0403 -5.0796 1.4217 23 6 2.0718 -0.7818 -1.2215 24 1 -0.3634 0.4957 0.9002 25 1 -0.3634 0.5318 -0.8794 26 1 -0.3633 -1.0275 -0.0208 27 1 3.1564 1.4125 -0.0209 28 1 1.6964 1.9595 -0.8794 29 1 1.7302 1.9469 0.9001 30 1 1.2391 -1.1778 1.7981 31 1 2.6773 -0.1201 1.8369 32 1 3.1102 -2.9963 -2.4582 33 1 4.3763 -2.3364 -1.3954 34 1 3.0843 -4.8630 -4.4934 35 1 5.1287 -3.4759 0.4478 36 1 5.3685 -6.0524 -1.1012 37 1 6.6346 -4.8574 -0.6782 38 1 6.8191 -5.6891 1.5784 39 1 6.5552 -7.2032 0.6549 40 1 4.8982 -6.6215 2.6990 41 1 4.2017 -7.2370 1.1674 42 1 4.1816 -4.4384 2.2917 43 1 2.9772 -5.2484 1.2500 44 1 2.9797 -0.3187 -1.6080 45 1 1.3140 -0.8592 -2.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602783349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:45 Heat of formation + Delta-G solvation = -62.385535 kcal Electronic energy + Delta-G solvation = -22214.382942 eV Core-core repulsion = 19230.807117 eV Total energy + Delta-G solvation = -2983.575825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76115 -39.17768 -36.15141 -35.26500 -33.10857 -31.41212 -29.32241 -28.25266 -28.21140 -27.37261 -26.56517 -24.25093 -21.90892 -21.28266 -20.75514 -20.18545 -18.19219 -17.35950 -16.78687 -16.39261 -16.30790 -15.93433 -15.68885 -15.16057 -14.62679 -14.50179 -14.33448 -14.10197 -14.03967 -13.77549 -13.10306 -13.05143 -12.79253 -12.61754 -12.54133 -12.43302 -12.16281 -12.05518 -11.90360 -11.78972 -11.75551 -11.70698 -11.54554 -11.44518 -11.32546 -11.25077 -11.03465 -10.47071 -10.37139 -8.40574 -7.78668 -5.33771 1.43583 1.46777 1.54095 2.52027 3.15318 3.25861 3.58974 3.65337 3.88852 3.98480 4.02887 4.06371 4.26802 4.34764 4.40927 4.45230 4.66463 4.74514 4.75291 4.79515 4.80016 4.81670 4.83605 4.96310 4.96786 5.01693 5.03989 5.06166 5.13133 5.21745 5.22832 5.26642 5.29735 5.33096 5.35875 5.47830 5.58165 5.64050 5.69940 5.72574 5.87069 6.24827 6.56229 7.24272 7.96017 8.50554 9.20612 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014643 B = 0.007772 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.754295 B = 3601.842989 C = 4820.667029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C -0.128 4.128 4 C 0.048 3.952 5 O -0.388 6.388 6 C 0.074 3.926 7 H 0.035 0.965 8 C 0.159 3.841 9 N -0.586 5.586 10 C -0.242 4.242 11 H 0.051 0.949 12 C -0.035 4.035 13 N -0.921 5.921 14 Si 0.947 3.053 15 H -0.287 1.287 16 H -0.294 1.294 17 H -0.274 1.274 18 C 0.172 3.828 19 C -0.131 4.131 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.021 0.979 34 H 0.251 0.749 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 8.610 8.755 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 C -0.185 4.185 4 C -0.029 4.029 5 O -0.307 6.307 6 C 0.014 3.986 7 H 0.053 0.947 8 C 0.032 3.968 9 N -0.306 5.306 10 C -0.373 4.373 11 H 0.069 0.931 12 C -0.232 4.232 13 N -0.566 5.566 14 Si 0.776 3.224 15 H -0.213 1.213 16 H -0.221 1.221 17 H -0.199 1.199 18 C 0.065 3.935 19 C -0.170 4.170 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.174 4.174 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.417 8.553 8.698 12.280 hybrid contribution -0.953 -0.646 -0.909 1.467 sum -2.369 7.906 7.789 11.349 Atomic orbital electron populations 1.21826 0.92829 1.01387 1.02990 1.21944 0.96919 0.96925 0.93920 1.21777 1.00635 0.93223 1.02891 1.23424 0.94863 0.88711 0.95925 1.88888 1.56538 1.53054 1.32261 1.23734 0.97186 0.94840 0.82841 0.94679 1.20906 0.94047 0.84187 0.97631 1.44012 1.40072 1.03459 1.43007 1.19031 1.24866 1.02790 0.90591 0.93099 1.25713 1.00990 1.00321 0.96170 1.69998 1.40564 1.46061 0.99959 0.85579 0.80730 0.79046 0.77025 1.21347 1.22058 1.19872 1.21116 0.88360 0.95400 0.88575 1.22742 0.97777 0.98581 0.97925 1.22391 0.96871 0.99500 0.96137 1.22247 0.96029 0.96698 1.00157 1.22346 0.99335 0.96498 0.97570 1.23201 1.01316 0.94917 0.97942 0.90715 0.91475 0.94109 0.92890 0.91641 0.90855 0.93086 0.89112 0.90163 0.96006 0.93969 0.93531 0.93781 0.93744 0.90497 0.91570 0.90366 0.93477 0.92379 0.93918 0.90896 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.26 71.98 0.59 -2.43 16 2 C -0.10 -2.52 0.99 -51.19 -0.05 -2.57 16 3 C -0.13 -2.60 8.27 71.98 0.60 -2.01 16 4 C 0.05 1.40 7.04 72.36 0.51 1.91 16 5 O -0.39 -15.29 11.07 -148.98 -1.65 -16.94 16 6 C 0.07 3.05 3.57 31.28 0.11 3.16 16 7 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 8 C 0.16 7.71 5.01 86.38 0.43 8.14 16 9 N -0.59 -29.67 2.39 -674.01 -1.61 -31.28 16 10 C -0.24 -13.24 7.77 84.03 0.65 -12.58 16 11 H 0.05 2.85 6.97 -2.91 -0.02 2.83 16 12 C -0.04 -1.96 4.96 84.86 0.42 -1.54 16 13 N -0.92 -53.29 11.43 21.65 0.25 -53.04 16 14 Si 0.95 44.92 29.61 68.60 2.03 46.95 16 15 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 16 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 18 C 0.17 7.64 3.26 45.72 0.15 7.79 16 19 C -0.13 -5.52 6.43 31.70 0.20 -5.31 16 20 C -0.11 -3.66 6.91 31.91 0.22 -3.44 16 21 C -0.11 -3.85 6.83 31.67 0.22 -3.63 16 22 C -0.12 -4.69 6.15 31.32 0.19 -4.50 16 23 C -0.14 -4.46 5.70 31.89 0.18 -4.28 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 31 H 0.09 2.30 7.69 -2.39 -0.02 2.29 16 32 H 0.08 4.36 5.48 -2.39 -0.01 4.35 16 33 H 0.02 1.05 7.96 -2.39 -0.02 1.03 16 34 H 0.25 14.11 8.32 -92.71 -0.77 13.34 16 35 H 0.05 2.07 7.85 -2.39 -0.02 2.05 16 36 H 0.04 2.19 7.19 -2.39 -0.02 2.17 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.04 1.90 6.75 -2.39 -0.02 1.89 16 44 H 0.07 2.38 7.78 -2.38 -0.02 2.36 16 45 H 0.07 2.37 7.86 -2.39 -0.02 2.36 16 Total: -1.00 -61.02 344.33 4.37 -56.65 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.92 Total: 18.94 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 4.43 Total: -21.28 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.36 Total: -84.32 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -1.65 Total: -16.94 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -61.02 4.37 -56.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602783349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.736 kcal (2) G-P(sol) polarization free energy of solvation -61.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds