Wall clock time and date at job start Mon Mar 30 2020 07:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.75339 * 2 1 4 4 C 1.54387 * 110.84851 * 123.47159 * 2 1 3 5 5 O 1.43239 * 107.58653 * 139.54763 * 4 2 1 6 6 C 1.43644 * 109.97314 * 1.71190 * 5 4 2 7 7 H 1.08999 * 110.30855 * 94.58644 * 6 5 4 8 8 C 1.53000 * 110.30968 * 216.65704 * 6 5 4 9 9 N 1.46901 * 109.47158 * 298.54942 * 8 6 5 10 10 C 1.46847 * 111.00144 * 170.00079 * 9 8 6 11 11 C 1.53044 * 109.51335 * 185.83239 * 10 9 8 12 12 C 1.53117 * 109.27792 * 300.82256 * 11 10 9 13 13 C 1.50693 * 109.52032 * 177.55923 * 12 11 10 14 14 H 1.07997 * 120.00322 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99827 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00213 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99995 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47016 * 90.00148 * 17 15 13 19 19 H 1.48499 * 109.47226 * 210.00051 * 17 15 13 20 20 H 1.48493 * 109.47255 * 330.00392 * 17 15 13 21 21 C 1.53127 * 109.15989 * 57.65607 * 12 11 10 22 22 C 1.46830 * 110.98168 * 294.21498 * 9 8 6 23 23 C 1.54942 * 105.13708 * 335.57175 * 6 5 4 24 24 H 1.09001 * 109.46939 * 297.98112 * 1 2 3 25 25 H 1.08994 * 109.46985 * 57.98403 * 1 2 3 26 26 H 1.08998 * 109.46722 * 177.98021 * 1 2 3 27 27 H 1.08999 * 109.47166 * 182.02170 * 3 2 1 28 28 H 1.09007 * 109.46944 * 302.02071 * 3 2 1 29 29 H 1.09000 * 109.47262 * 62.01630 * 3 2 1 30 30 H 1.08991 * 109.82721 * 20.03503 * 4 2 1 31 31 H 1.08997 * 109.90434 * 259.10344 * 4 2 1 32 32 H 1.09001 * 109.47466 * 178.54878 * 8 6 5 33 33 H 1.09002 * 109.47083 * 58.54293 * 8 6 5 34 34 H 1.09002 * 109.46448 * 65.81961 * 10 9 8 35 35 H 1.08994 * 109.45958 * 305.84326 * 10 9 8 36 36 H 1.09001 * 109.49858 * 60.76701 * 11 10 9 37 37 H 1.09002 * 109.49779 * 180.84687 * 11 10 9 38 38 H 1.09004 * 109.52347 * 297.75632 * 12 11 10 39 39 H 0.96995 * 120.00233 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.50037 * 62.28538 * 21 12 11 41 41 H 1.08996 * 109.50157 * 182.36309 * 21 12 11 42 42 H 1.08995 * 109.46742 * 54.13906 * 22 9 8 43 43 H 1.09004 * 109.45381 * 294.16241 * 22 9 8 44 44 H 1.08998 * 111.13037 * 154.36219 * 23 6 5 45 45 H 1.08997 * 111.13044 * 278.52411 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0722 1.4307 0.0000 4 6 2.0795 -0.7957 1.2035 5 8 3.2045 -1.5538 0.7438 6 6 3.4465 -1.2796 -0.6453 7 1 4.1948 -0.4942 -0.7510 8 6 3.9050 -2.5493 -1.3653 9 7 5.1640 -3.0206 -0.7729 10 6 5.5125 -4.3570 -1.2717 11 6 6.7457 -4.8748 -0.5279 12 6 7.9119 -3.9072 -0.7476 13 6 9.1121 -4.3801 0.0312 14 1 9.0508 -5.2809 0.6237 15 6 10.2891 -3.6633 -0.0136 16 7 10.3641 -2.5666 -0.7356 17 14 11.7772 -4.2499 0.9512 18 1 12.5892 -5.1599 0.1040 19 1 12.6002 -3.0804 1.3513 20 1 11.3254 -4.9758 2.1653 21 6 7.5054 -2.5122 -0.2643 22 6 6.2502 -2.0630 -1.0157 23 6 2.0828 -0.8052 -1.2075 24 1 -0.3633 0.4822 0.9076 25 1 -0.3633 0.5448 -0.8713 26 1 -0.3633 -1.0270 -0.0362 27 1 3.1613 1.4066 -0.0363 28 1 1.6913 1.9636 -0.8714 29 1 1.7500 1.9414 0.9075 30 1 1.3109 -1.4683 1.5839 31 1 2.3926 -0.1095 1.9903 32 1 4.0597 -2.3320 -2.4221 33 1 3.1429 -3.3216 -1.2608 34 1 5.7286 -4.3015 -2.3387 35 1 4.6763 -5.0361 -1.1055 36 1 6.5257 -4.9437 0.5375 37 1 7.0132 -5.8605 -0.9088 38 1 8.1574 -3.8677 -1.8089 39 1 11.1922 -2.0625 -0.7674 40 1 7.2975 -2.5440 0.8052 41 1 8.3164 -1.8099 -0.4566 42 1 5.9499 -1.0761 -0.6637 43 1 6.4628 -2.0184 -2.0839 44 1 2.2185 -0.1638 -2.0783 45 1 1.4386 -1.6524 -1.4427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602806051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:28 Heat of formation + Delta-G solvation = -62.827814 kcal Electronic energy + Delta-G solvation = -21452.532265 eV Core-core repulsion = 18468.937262 eV Total energy + Delta-G solvation = -2983.595004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01161 -37.95877 -34.66607 -33.85166 -31.79477 -29.92027 -29.69497 -27.61848 -26.58675 -25.88669 -24.18932 -22.23738 -21.59214 -20.46028 -19.33959 -18.46494 -16.52490 -16.27266 -15.61967 -15.19093 -14.78760 -14.43028 -14.12239 -13.88358 -13.61186 -13.43174 -13.32303 -12.80898 -12.66897 -12.32915 -12.25170 -12.00777 -11.88710 -11.53541 -11.36777 -11.24785 -10.95323 -10.86437 -10.78654 -10.60125 -10.55411 -10.22150 -10.11216 -9.88758 -9.37159 -9.24686 -8.86739 -8.59027 -8.21801 -7.58292 -5.90327 -3.95101 3.35986 3.42447 3.46759 3.87792 4.23241 4.43385 4.51314 4.62114 4.71914 5.05701 5.08973 5.14187 5.35755 5.38943 5.41640 5.45547 5.54741 5.63135 5.65436 5.69991 5.75955 5.83837 5.85420 5.89377 5.96672 6.00409 6.08760 6.17720 6.24944 6.30558 6.41550 6.72299 6.72748 6.95799 7.17292 7.23400 7.31262 7.54796 7.73124 7.81608 7.93710 8.14909 8.24804 8.56891 9.08560 9.68765 11.15908 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034984 B = 0.003968 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.181586 B = 7054.575793 C = 7348.993472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 C -0.138 4.138 4 C 0.056 3.944 5 O -0.354 6.354 6 C 0.089 3.911 7 H 0.070 0.930 8 C 0.056 3.944 9 N -0.525 5.525 10 C 0.061 3.939 11 C -0.106 4.106 12 C 0.048 3.952 13 C -0.508 4.508 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.102 4.102 22 C 0.057 3.943 23 C -0.143 4.143 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.021 0.979 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.019 0.981 39 H 0.258 0.742 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.080 0.920 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.857 6.287 -1.360 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 C -0.196 4.196 4 C -0.021 4.021 5 O -0.272 6.272 6 C 0.031 3.969 7 H 0.088 0.912 8 C -0.072 4.072 9 N -0.250 5.250 10 C -0.066 4.066 11 C -0.144 4.144 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.141 4.141 22 C -0.071 4.071 23 C -0.181 4.181 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.037 0.963 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.098 0.902 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.661 6.244 -0.770 19.693 hybrid contribution 0.801 0.021 -0.529 0.960 sum -17.860 6.265 -1.299 18.971 Atomic orbital electron populations 1.21742 0.93434 1.02047 1.01941 1.22120 0.96368 0.96195 0.95509 1.21825 1.01498 0.94355 1.01892 1.23240 0.89162 0.94064 0.95669 1.88618 1.48055 1.66160 1.24409 1.22992 0.95276 0.96740 0.81886 0.91211 1.22209 0.93795 0.96196 0.95040 1.61927 1.02117 1.02783 1.58152 1.22109 0.98474 0.89651 0.96390 1.21671 0.94389 0.98762 0.99546 1.18682 0.91228 0.90816 0.96334 1.21227 0.95743 1.09237 1.28447 0.92778 1.24968 0.98579 0.95017 0.95487 1.69882 1.26506 1.16175 1.40674 0.86639 0.82976 0.78188 0.80450 1.20872 1.21331 1.19946 1.21632 0.93539 1.00967 0.97934 1.22307 0.92619 0.94344 0.97794 1.23402 0.96890 0.99974 0.97849 0.92380 0.92360 0.92304 0.92067 0.92377 0.92276 0.91741 0.91814 0.94471 0.90953 0.96095 0.92570 0.92419 0.93327 0.96278 0.93195 0.93751 0.89133 0.92653 0.96313 0.90169 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 8.50 37.16 0.32 -0.70 16 2 C -0.10 -0.97 0.94 -152.56 -0.14 -1.11 16 3 C -0.14 -1.23 8.47 37.16 0.31 -0.92 16 4 C 0.06 0.66 6.99 37.88 0.26 0.93 16 5 O -0.35 -5.65 10.95 -35.23 -0.39 -6.03 16 6 C 0.09 1.24 2.97 -25.71 -0.08 1.17 16 7 H 0.07 1.03 6.14 -51.93 -0.32 0.72 16 8 C 0.06 0.86 4.69 -3.82 -0.02 0.84 16 9 N -0.53 -10.03 4.57 -234.68 -1.07 -11.10 16 10 C 0.06 1.17 5.46 -3.83 -0.02 1.15 16 11 C -0.11 -2.34 5.32 -26.65 -0.14 -2.48 16 12 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 13 C -0.51 -14.39 8.56 -34.44 -0.29 -14.68 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 16 N -0.89 -25.96 11.37 55.43 0.63 -25.33 16 17 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.10 -2.53 5.12 -26.65 -0.14 -2.67 16 22 C 0.06 1.17 5.30 -3.84 -0.02 1.15 16 23 C -0.14 -1.48 5.53 -24.48 -0.14 -1.62 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.06 0.62 7.53 -51.93 -0.39 0.23 16 28 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.70 7.81 -51.93 -0.41 0.30 16 31 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 32 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.07 1.04 7.99 -51.93 -0.41 0.63 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.96 8.01 -51.93 -0.42 0.54 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 42 H 0.06 1.07 6.24 -51.93 -0.32 0.75 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 45 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -29.96 340.52 -9.54 -39.50 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -8.44 Total: -2.61 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -0.39 Total: -16.31 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.44 Total: -36.44 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.39 Total: -6.03 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.96 -9.54 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602806051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.325 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds