Wall clock time and date at job start Mon Mar 30 2020 07:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.75339 * 2 1 4 4 C 1.54387 * 110.84851 * 123.47159 * 2 1 3 5 5 O 1.43239 * 107.58653 * 139.54763 * 4 2 1 6 6 C 1.43644 * 109.97314 * 1.71190 * 5 4 2 7 7 H 1.08999 * 110.30855 * 94.58644 * 6 5 4 8 8 C 1.53000 * 110.30968 * 216.65704 * 6 5 4 9 9 N 1.46901 * 109.47158 * 298.54942 * 8 6 5 10 10 C 1.46847 * 111.00144 * 170.00079 * 9 8 6 11 11 C 1.53044 * 109.51335 * 185.83239 * 10 9 8 12 12 C 1.53117 * 109.27792 * 300.82256 * 11 10 9 13 13 C 1.50693 * 109.52032 * 177.55923 * 12 11 10 14 14 H 1.07997 * 120.00322 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99827 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00213 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99995 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47016 * 90.00148 * 17 15 13 19 19 H 1.48499 * 109.47226 * 210.00051 * 17 15 13 20 20 H 1.48493 * 109.47255 * 330.00392 * 17 15 13 21 21 C 1.53127 * 109.15989 * 57.65607 * 12 11 10 22 22 C 1.46830 * 110.98168 * 294.21498 * 9 8 6 23 23 C 1.54942 * 105.13708 * 335.57175 * 6 5 4 24 24 H 1.09001 * 109.46939 * 297.98112 * 1 2 3 25 25 H 1.08994 * 109.46985 * 57.98403 * 1 2 3 26 26 H 1.08998 * 109.46722 * 177.98021 * 1 2 3 27 27 H 1.08999 * 109.47166 * 182.02170 * 3 2 1 28 28 H 1.09007 * 109.46944 * 302.02071 * 3 2 1 29 29 H 1.09000 * 109.47262 * 62.01630 * 3 2 1 30 30 H 1.08991 * 109.82721 * 20.03503 * 4 2 1 31 31 H 1.08997 * 109.90434 * 259.10344 * 4 2 1 32 32 H 1.09001 * 109.47466 * 178.54878 * 8 6 5 33 33 H 1.09002 * 109.47083 * 58.54293 * 8 6 5 34 34 H 1.09002 * 109.46448 * 65.81961 * 10 9 8 35 35 H 1.08994 * 109.45958 * 305.84326 * 10 9 8 36 36 H 1.09001 * 109.49858 * 60.76701 * 11 10 9 37 37 H 1.09002 * 109.49779 * 180.84687 * 11 10 9 38 38 H 1.09004 * 109.52347 * 297.75632 * 12 11 10 39 39 H 0.96995 * 120.00233 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.50037 * 62.28538 * 21 12 11 41 41 H 1.08996 * 109.50157 * 182.36309 * 21 12 11 42 42 H 1.08995 * 109.46742 * 54.13906 * 22 9 8 43 43 H 1.09004 * 109.45381 * 294.16241 * 22 9 8 44 44 H 1.08998 * 111.13037 * 154.36219 * 23 6 5 45 45 H 1.08997 * 111.13044 * 278.52411 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0722 1.4307 0.0000 4 6 2.0795 -0.7957 1.2035 5 8 3.2045 -1.5538 0.7438 6 6 3.4465 -1.2796 -0.6453 7 1 4.1948 -0.4942 -0.7510 8 6 3.9050 -2.5493 -1.3653 9 7 5.1640 -3.0206 -0.7729 10 6 5.5125 -4.3570 -1.2717 11 6 6.7457 -4.8748 -0.5279 12 6 7.9119 -3.9072 -0.7476 13 6 9.1121 -4.3801 0.0312 14 1 9.0508 -5.2809 0.6237 15 6 10.2891 -3.6633 -0.0136 16 7 10.3641 -2.5666 -0.7356 17 14 11.7772 -4.2499 0.9512 18 1 12.5892 -5.1599 0.1040 19 1 12.6002 -3.0804 1.3513 20 1 11.3254 -4.9758 2.1653 21 6 7.5054 -2.5122 -0.2643 22 6 6.2502 -2.0630 -1.0157 23 6 2.0828 -0.8052 -1.2075 24 1 -0.3633 0.4822 0.9076 25 1 -0.3633 0.5448 -0.8713 26 1 -0.3633 -1.0270 -0.0362 27 1 3.1613 1.4066 -0.0363 28 1 1.6913 1.9636 -0.8714 29 1 1.7500 1.9414 0.9075 30 1 1.3109 -1.4683 1.5839 31 1 2.3926 -0.1095 1.9903 32 1 4.0597 -2.3320 -2.4221 33 1 3.1429 -3.3216 -1.2608 34 1 5.7286 -4.3015 -2.3387 35 1 4.6763 -5.0361 -1.1055 36 1 6.5257 -4.9437 0.5375 37 1 7.0132 -5.8605 -0.9088 38 1 8.1574 -3.8677 -1.8089 39 1 11.1922 -2.0625 -0.7674 40 1 7.2975 -2.5440 0.8052 41 1 8.3164 -1.8099 -0.4566 42 1 5.9499 -1.0761 -0.6637 43 1 6.4628 -2.0184 -2.0839 44 1 2.2185 -0.1638 -2.0783 45 1 1.4386 -1.6524 -1.4427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602806051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:28 Heat of formation + Delta-G solvation = -80.848388 kcal Electronic energy + Delta-G solvation = -21453.313696 eV Core-core repulsion = 18468.937262 eV Total energy + Delta-G solvation = -2984.376434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01374 -39.55099 -35.98620 -35.26615 -33.57110 -31.48600 -31.26620 -28.26465 -28.04953 -26.95779 -25.72399 -23.92236 -23.27540 -21.65458 -20.44311 -20.08037 -18.44797 -17.52466 -16.85285 -16.55479 -16.32603 -15.85804 -15.39691 -15.02905 -14.85128 -14.76075 -14.35929 -14.22409 -14.10533 -14.02225 -13.50206 -13.11361 -12.99757 -12.85720 -12.74594 -12.55527 -12.47399 -12.40252 -12.10652 -11.98570 -11.85796 -11.63302 -11.57059 -11.40412 -11.24072 -10.79356 -10.67892 -10.38730 -10.27851 -9.08504 -8.07518 -6.20848 1.40570 1.41602 1.52232 2.44212 2.84125 3.17770 3.19862 3.43837 3.76262 3.86918 4.07638 4.12437 4.23869 4.32211 4.35059 4.37316 4.46371 4.53911 4.66376 4.68833 4.76239 4.77671 4.79308 4.85684 4.89219 4.92231 4.97185 5.02761 5.05306 5.08715 5.17311 5.19738 5.24408 5.32341 5.34862 5.45888 5.56959 5.63093 6.00383 6.03457 6.20679 6.34163 6.41165 6.43891 6.90316 7.46564 8.97211 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034984 B = 0.003968 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.181586 B = 7054.575793 C = 7348.993472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 C -0.138 4.138 4 C 0.047 3.953 5 O -0.390 6.390 6 C 0.085 3.915 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.539 5.539 10 C 0.067 3.933 11 C -0.099 4.099 12 C 0.045 3.955 13 C -0.535 4.535 14 H 0.050 0.950 15 C 0.011 3.989 16 N -0.918 5.918 17 Si 0.954 3.046 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.270 1.270 21 C -0.092 4.092 22 C 0.071 3.929 23 C -0.134 4.134 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.024 0.976 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.054 0.946 38 H -0.010 1.010 39 H 0.260 0.740 40 H 0.023 0.977 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.016 0.984 44 H 0.095 0.905 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.788 6.362 -1.645 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.095 4.095 3 C -0.195 4.195 4 C -0.029 4.029 5 O -0.309 6.309 6 C 0.027 3.973 7 H 0.073 0.927 8 C -0.071 4.071 9 N -0.264 5.264 10 C -0.061 4.061 11 C -0.137 4.137 12 C 0.026 3.974 13 C -0.573 4.573 14 H 0.068 0.932 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.780 3.220 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.195 1.195 21 C -0.131 4.131 22 C -0.057 4.057 23 C -0.172 4.172 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.008 0.992 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.034 0.966 44 H 0.113 0.887 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.613 6.318 -1.059 21.585 hybrid contribution 1.402 0.002 -0.412 1.461 sum -19.211 6.320 -1.471 20.277 Atomic orbital electron populations 1.21719 0.91504 1.02553 1.02966 1.22106 0.97758 0.95871 0.93813 1.21832 1.00321 0.94349 1.03046 1.23438 0.88456 0.94341 0.96689 1.88570 1.49709 1.67140 1.25506 1.23006 0.97004 0.95644 0.81598 0.92711 1.22327 0.91832 0.97213 0.95732 1.61864 1.02861 1.02391 1.59241 1.22043 0.97880 0.90242 0.95890 1.21540 0.94547 0.98286 0.99365 1.18651 0.92235 0.92372 0.94093 1.21594 0.97244 1.09404 1.29020 0.93212 1.25757 1.01417 0.95102 0.96402 1.70018 1.27208 1.16961 1.41558 0.85614 0.79390 0.77865 0.79136 1.20015 1.20789 1.19484 1.21386 0.94754 0.99890 0.97067 1.22019 0.91601 0.95262 0.96773 1.23376 0.94690 1.00648 0.98461 0.91620 0.91103 0.92092 0.93923 0.90858 0.91512 0.90916 0.92030 0.93073 0.89555 0.95794 0.89676 0.93545 0.92683 0.99174 0.93086 0.95773 0.92126 0.91586 0.96604 0.88659 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.50 71.98 0.61 -0.94 16 2 C -0.10 -1.60 0.94 -50.92 -0.05 -1.64 16 3 C -0.14 -2.19 8.47 71.98 0.61 -1.58 16 4 C 0.05 1.06 6.99 72.45 0.51 1.57 16 5 O -0.39 -12.16 10.95 -148.98 -1.63 -13.79 16 6 C 0.09 2.27 2.97 31.26 0.09 2.36 16 7 H 0.06 1.60 6.14 -2.39 -0.01 1.59 16 8 C 0.06 1.62 4.69 86.30 0.40 2.02 16 9 N -0.54 -20.13 4.57 -896.39 -4.10 -24.23 16 10 C 0.07 2.47 5.46 86.33 0.47 2.95 16 11 C -0.10 -4.42 5.32 30.65 0.16 -4.26 16 12 C 0.05 2.40 2.16 -11.46 -0.02 2.37 16 13 C -0.53 -31.04 8.56 25.60 0.22 -30.83 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.01 0.66 5.31 84.65 0.45 1.11 16 16 N -0.92 -54.72 11.37 21.45 0.24 -54.47 16 17 Si 0.95 45.20 29.54 68.60 2.03 47.23 16 18 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 C -0.09 -4.75 5.12 30.65 0.16 -4.59 16 22 C 0.07 2.97 5.30 86.33 0.46 3.43 16 23 C -0.13 -2.42 5.53 32.05 0.18 -2.24 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.72 8.12 -2.39 -0.02 0.70 16 27 H 0.04 0.83 7.53 -2.39 -0.02 0.81 16 28 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.48 7.81 -2.39 -0.02 1.46 16 31 H 0.06 1.37 7.84 -2.39 -0.02 1.35 16 32 H 0.05 1.34 8.12 -2.39 -0.02 1.32 16 33 H 0.09 2.24 7.99 -2.39 -0.02 2.22 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 2.67 8.01 -2.39 -0.02 2.65 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 39 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 3.45 6.17 -2.39 -0.01 3.43 16 42 H 0.07 2.59 6.24 -2.39 -0.01 2.58 16 43 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.09 1.45 8.04 -2.39 -0.02 1.43 16 45 H 0.09 1.45 7.94 -2.39 -0.02 1.43 16 Total: -1.00 -65.77 340.52 1.71 -64.07 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.92 Total: 11.48 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 4.25 Total: -30.28 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -3.85 Total: -78.70 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.63 Total: -13.79 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.77 1.71 -64.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602806051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.781 kcal (2) G-P(sol) polarization free energy of solvation -65.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds