Wall clock time and date at job start Mon Mar 30 2020 07:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 110.56561 * 2 1 4 4 C 1.54477 * 110.51208 * 237.31957 * 2 1 3 5 5 O 1.44430 * 104.80163 * 265.33143 * 4 2 1 6 6 C 1.44421 * 105.27802 * 319.48933 * 5 4 2 7 7 H 1.08998 * 110.46502 * 281.63605 * 6 5 4 8 8 C 1.52994 * 110.37304 * 159.34233 * 6 5 4 9 9 N 1.46900 * 109.47274 * 69.61928 * 8 6 5 10 10 C 1.46848 * 110.99918 * 189.99746 * 9 8 6 11 11 C 1.53037 * 109.52381 * 174.15634 * 10 9 8 12 12 C 1.53123 * 109.27398 * 59.18254 * 11 10 9 13 13 C 1.50697 * 109.52144 * 182.37768 * 12 11 10 14 14 H 1.08002 * 120.00183 * 359.87142 * 13 12 11 15 15 C 1.37886 * 119.99978 * 179.87413 * 13 12 11 16 16 N 1.31514 * 119.99643 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99848 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47310 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46746 * 120.00271 * 17 15 13 20 20 H 1.48496 * 109.46896 * 239.99879 * 17 15 13 21 21 C 1.53120 * 109.21163 * 302.31409 * 12 11 10 22 22 C 1.46845 * 111.00045 * 65.79158 * 9 8 6 23 23 C 1.54482 * 104.80413 * 40.50860 * 6 5 4 24 24 H 1.09008 * 109.47135 * 297.32284 * 1 2 3 25 25 H 1.08999 * 109.46872 * 57.32207 * 1 2 3 26 26 H 1.08998 * 109.47113 * 177.32166 * 1 2 3 27 27 H 1.09000 * 109.46778 * 182.67739 * 3 2 1 28 28 H 1.09002 * 109.46881 * 302.67803 * 3 2 1 29 29 H 1.08998 * 109.46818 * 62.67747 * 3 2 1 30 30 H 1.08993 * 110.37105 * 24.16258 * 4 2 1 31 31 H 1.08997 * 110.37109 * 146.50531 * 4 2 1 32 32 H 1.09007 * 109.47325 * 309.61583 * 8 6 5 33 33 H 1.09007 * 109.46981 * 189.62196 * 8 6 5 34 34 H 1.09006 * 109.46097 * 54.14433 * 10 9 8 35 35 H 1.08996 * 109.46972 * 294.17743 * 10 9 8 36 36 H 1.08996 * 109.50616 * 299.24564 * 11 10 9 37 37 H 1.08993 * 109.53667 * 179.13827 * 11 10 9 38 38 H 1.09002 * 109.52319 * 62.25202 * 12 11 10 39 39 H 0.97000 * 119.99912 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.49930 * 177.63007 * 21 12 11 41 41 H 1.08997 * 109.50353 * 297.74224 * 21 12 11 42 42 H 1.09003 * 109.45905 * 305.85870 * 22 9 8 43 43 H 1.09002 * 109.46166 * 65.83312 * 22 9 8 44 44 H 1.09004 * 110.50740 * 94.66466 * 23 6 5 45 45 H 1.08995 * 110.51549 * 217.24269 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4326 0.0000 4 6 2.0713 -0.7812 -1.2178 5 8 2.3070 -2.1177 -0.7237 6 6 2.8757 -1.9422 0.5922 7 1 3.9304 -1.6769 0.5192 8 6 2.7041 -3.2167 1.4210 9 7 3.5689 -4.2734 0.8790 10 6 3.2611 -5.5715 1.4926 11 6 4.0755 -6.6688 0.8036 12 6 5.5676 -6.3564 0.9471 13 6 6.3733 -7.4023 0.2206 14 1 5.8723 -8.2109 -0.2909 15 6 7.7500 -7.3270 0.2088 16 7 8.3599 -6.3421 0.8313 17 14 8.7486 -8.6232 -0.6924 18 1 7.8312 -9.6161 -1.3069 19 1 9.5591 -7.9739 -1.7539 20 1 9.6494 -9.3101 0.2677 21 6 5.8543 -4.9788 0.3432 22 6 4.9868 -3.9301 1.0459 23 6 2.0714 -0.7813 1.2182 24 1 -0.3634 0.4717 0.9131 25 1 -0.3633 0.5549 -0.8650 26 1 -0.3633 -1.0265 -0.0480 27 1 3.1562 1.4121 -0.0480 28 1 1.6756 1.9676 -0.8650 29 1 1.7534 1.9384 0.9130 30 1 1.3311 -0.7974 -2.0177 31 1 3.0023 -0.3373 -1.5701 32 1 1.6642 -3.5407 1.3782 33 1 2.9800 -3.0167 2.4564 34 1 2.1978 -5.7835 1.3799 35 1 3.5149 -5.5419 2.5522 36 1 3.8120 -6.7083 -0.2533 37 1 3.8587 -7.6303 1.2689 38 1 5.8397 -6.3552 2.0026 39 1 9.3285 -6.2893 0.8234 40 1 6.9074 -4.7334 0.4805 41 1 5.6188 -4.9918 -0.7209 42 1 5.1770 -2.9498 0.6089 43 1 5.2327 -3.9083 2.1076 44 1 1.2490 -1.1676 1.8203 45 1 2.7214 -0.1483 1.8222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602806056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:30 Heat of formation + Delta-G solvation = -80.849189 kcal Electronic energy + Delta-G solvation = -21402.964409 eV Core-core repulsion = 18418.587940 eV Total energy + Delta-G solvation = -2984.376469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98232 -39.55470 -35.99953 -35.27366 -33.57484 -31.49218 -31.25252 -28.22263 -28.04887 -26.83945 -25.73238 -23.96669 -23.30011 -21.66165 -20.45409 -20.12141 -18.45819 -17.41582 -16.64443 -16.56556 -16.42145 -15.98136 -15.47930 -15.10408 -14.81735 -14.68253 -14.40288 -14.35080 -13.99037 -13.91493 -13.43510 -13.16463 -13.01975 -12.86184 -12.69598 -12.52975 -12.40844 -12.37256 -12.07209 -11.98850 -11.86679 -11.58383 -11.51180 -11.49710 -11.25976 -10.80535 -10.69080 -10.47096 -10.35613 -9.11645 -8.07834 -6.21036 1.39739 1.41414 1.53237 2.44051 2.91249 3.14159 3.18916 3.54365 3.77638 3.92397 4.02348 4.14801 4.23406 4.32672 4.36900 4.39414 4.49579 4.52769 4.65564 4.66566 4.74935 4.76704 4.81487 4.84126 4.86451 4.91406 4.96623 5.03089 5.07833 5.09347 5.16006 5.22966 5.26846 5.32986 5.34474 5.45231 5.56442 5.63036 5.98892 6.01775 6.05513 6.32330 6.36909 6.41702 6.90193 7.46442 8.96965 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.036701 B = 0.003875 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.733211 B = 7223.915753 C = 7480.703558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 C -0.135 4.135 4 C 0.041 3.959 5 O -0.382 6.382 6 C 0.079 3.921 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.541 5.541 10 C 0.067 3.933 11 C -0.100 4.100 12 C 0.044 3.956 13 C -0.533 4.533 14 H 0.049 0.951 15 C 0.012 3.988 16 N -0.917 5.917 17 Si 0.954 3.046 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.279 1.279 21 C -0.093 4.093 22 C 0.069 3.931 23 C -0.137 4.137 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.025 0.975 36 H 0.046 0.954 37 H 0.054 0.946 38 H -0.010 1.010 39 H 0.260 0.740 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.068 0.932 43 H 0.017 0.983 44 H 0.084 0.916 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.908 15.494 1.005 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.096 4.096 3 C -0.192 4.192 4 C -0.035 4.035 5 O -0.302 6.302 6 C 0.021 3.979 7 H 0.073 0.927 8 C -0.065 4.065 9 N -0.266 5.266 10 C -0.060 4.060 11 C -0.137 4.137 12 C 0.026 3.974 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.780 3.220 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.132 4.132 22 C -0.059 4.059 23 C -0.175 4.175 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.009 0.991 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.103 0.897 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.879 15.305 0.436 21.349 hybrid contribution 1.293 -0.621 0.441 1.500 sum -13.586 14.684 0.877 20.024 Atomic orbital electron populations 1.21805 0.92556 1.01810 1.02734 1.21935 0.97310 0.96334 0.94002 1.21827 1.00661 0.93749 1.02980 1.23722 1.00076 0.82694 0.97052 1.89242 1.82865 1.26603 1.31450 1.23045 0.96812 0.94648 0.83421 0.92663 1.22205 0.98095 0.90660 0.95583 1.61872 1.03899 1.02483 1.58367 1.22034 0.99734 0.89034 0.95216 1.21538 0.95926 0.96743 0.99533 1.18661 0.91527 0.93192 0.94047 1.21622 0.92025 1.10304 1.33192 0.93243 1.25751 0.98982 0.97682 0.96253 1.70020 1.08965 1.32463 1.44283 0.85564 0.78598 0.79397 0.78449 1.19300 1.20605 1.20487 1.21420 0.98909 0.95638 0.97191 1.22079 0.87820 0.98667 0.97300 1.23108 1.00369 0.95989 0.97998 0.91381 0.91560 0.93230 0.92847 0.91457 0.91231 0.88600 0.92681 0.89584 0.92897 0.89726 0.95710 0.93517 0.92685 0.99140 0.93088 0.91983 0.95708 0.91380 0.96472 0.89710 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.29 71.98 0.60 -1.29 16 2 C -0.10 -1.61 1.05 -51.16 -0.05 -1.66 16 3 C -0.13 -1.79 8.32 71.98 0.60 -1.19 16 4 C 0.04 0.91 6.74 72.48 0.49 1.40 16 5 O -0.38 -11.66 11.34 -148.98 -1.69 -13.35 16 6 C 0.08 2.10 3.25 31.10 0.10 2.20 16 7 H 0.06 1.62 6.20 -2.39 -0.01 1.60 16 8 C 0.06 1.78 4.56 86.30 0.39 2.18 16 9 N -0.54 -20.06 4.66 -896.08 -4.17 -24.24 16 10 C 0.07 2.48 5.46 86.33 0.47 2.95 16 11 C -0.10 -4.40 5.32 30.65 0.16 -4.24 16 12 C 0.04 2.34 2.16 -11.46 -0.02 2.31 16 13 C -0.53 -30.81 8.56 25.60 0.22 -30.59 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 15 C 0.01 0.66 5.31 84.66 0.45 1.11 16 16 N -0.92 -54.36 11.36 21.45 0.24 -54.12 16 17 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 C -0.09 -4.72 5.13 30.69 0.16 -4.57 16 22 C 0.07 2.84 5.30 86.37 0.46 3.30 16 23 C -0.14 -2.57 5.92 31.61 0.19 -2.39 16 24 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.77 8.08 -2.39 -0.02 0.75 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 1.88 7.87 -2.39 -0.02 1.86 16 31 H 0.05 1.20 7.83 -2.39 -0.02 1.18 16 32 H 0.09 2.30 7.99 -2.38 -0.02 2.28 16 33 H 0.05 1.39 8.12 -2.38 -0.02 1.37 16 34 H 0.08 2.66 8.02 -2.38 -0.02 2.64 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.06 3.49 6.16 -2.39 -0.01 3.47 16 41 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 2.60 6.11 -2.39 -0.01 2.59 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 1.46 7.46 -2.39 -0.02 1.44 16 45 H 0.09 1.44 7.74 -2.39 -0.02 1.42 16 Total: -1.00 -64.85 340.79 1.53 -63.32 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.92 Total: 11.81 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 4.21 Total: -30.47 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -3.93 Total: -78.36 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.69 Total: -13.35 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.85 1.53 -63.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602806056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.526 kcal (2) G-P(sol) polarization free energy of solvation -64.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds