Wall clock time and date at job start Mon Mar 30 2020 07:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 110.82965 * 2 1 4 4 C 1.54993 * 110.90739 * 236.35880 * 2 1 3 5 5 O 1.44578 * 103.58784 * 204.85478 * 4 2 1 6 6 C 1.43743 * 106.86761 * 39.87455 * 5 4 2 7 7 H 1.09001 * 109.87660 * 93.17380 * 6 5 4 8 8 C 1.53001 * 109.87746 * 214.17148 * 6 5 4 9 9 N 1.46898 * 109.47146 * 298.29409 * 8 6 5 10 10 C 1.46839 * 111.00257 * 293.95151 * 9 8 6 11 11 C 1.53035 * 109.52653 * 174.15892 * 10 9 8 12 12 C 1.53126 * 109.27640 * 59.18359 * 11 10 9 13 13 C 1.53120 * 109.15673 * 302.34490 * 12 11 10 14 14 H 1.08994 * 109.50606 * 297.71149 * 13 12 11 15 15 C 1.50702 * 109.53344 * 177.61152 * 13 12 11 16 16 H 1.08000 * 120.00254 * 275.35459 * 15 13 12 17 17 C 1.37874 * 119.99883 * 95.35246 * 15 13 12 18 18 N 1.31511 * 120.00367 * 185.74892 * 17 15 13 19 19 Si 1.86802 * 120.00096 * 5.74924 * 17 15 13 20 20 H 1.48502 * 109.47295 * 84.77600 * 19 17 15 21 21 H 1.48495 * 109.47359 * 204.78181 * 19 17 15 22 22 H 1.48500 * 109.47098 * 324.78205 * 19 17 15 23 23 C 1.46844 * 110.99643 * 169.74455 * 9 8 6 24 24 C 1.54102 * 107.42162 * 333.67465 * 6 5 4 25 25 H 1.09004 * 109.46886 * 296.35045 * 1 2 3 26 26 H 1.08994 * 109.47724 * 56.34600 * 1 2 3 27 27 H 1.08996 * 109.47163 * 176.35353 * 1 2 3 28 28 H 1.09004 * 109.47333 * 183.65024 * 3 2 1 29 29 H 1.08999 * 109.47669 * 303.65378 * 3 2 1 30 30 H 1.09005 * 109.47076 * 63.65282 * 3 2 1 31 31 H 1.09003 * 110.61738 * 323.27392 * 4 2 1 32 32 H 1.08999 * 110.62183 * 86.27102 * 4 2 1 33 33 H 1.08996 * 109.46877 * 178.29232 * 8 6 5 34 34 H 1.09002 * 109.46932 * 58.30083 * 8 6 5 35 35 H 1.09000 * 109.46858 * 294.18052 * 10 9 8 36 36 H 1.09007 * 109.46066 * 54.14756 * 10 9 8 37 37 H 1.08996 * 109.50688 * 179.12314 * 11 10 9 38 38 H 1.08997 * 109.50608 * 299.24283 * 11 10 9 39 39 H 1.08996 * 109.52151 * 182.43998 * 12 11 10 40 40 H 1.08998 * 109.52337 * 62.24899 * 12 11 10 41 41 H 0.97002 * 120.00405 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.46700 * 305.85230 * 23 9 8 43 43 H 1.09001 * 109.46740 * 65.82401 * 23 9 8 44 44 H 1.09000 * 110.48381 * 120.63241 * 24 6 5 45 45 H 1.09000 * 110.48313 * 243.27304 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0740 1.4300 0.0000 4 6 2.0831 -0.8021 -1.2054 5 8 3.3955 -1.2176 -0.7635 6 6 3.2718 -1.5881 0.6198 7 1 3.0838 -2.6587 0.7013 8 6 4.5543 -1.2267 1.3718 9 7 5.6829 -1.9759 0.8035 10 6 5.5319 -3.4168 1.0428 11 6 6.6440 -4.1754 0.3150 12 6 8.0040 -3.6937 0.8279 13 6 8.1162 -2.1821 0.6108 14 1 8.0671 -1.9630 -0.4558 15 6 9.4277 -1.6893 1.1659 16 1 9.5127 -1.4454 2.2146 17 6 10.5191 -1.5498 0.3350 18 7 11.6913 -1.2291 0.8374 19 14 10.3327 -1.8164 -1.5045 20 1 9.8606 -0.5607 -2.1413 21 1 11.6441 -2.2028 -2.0841 22 1 9.3450 -2.8977 -1.7503 23 6 6.9613 -1.4813 1.3301 24 6 2.0825 -0.8013 1.2038 25 1 -0.3633 0.4562 0.9209 26 1 -0.3634 0.5695 -0.8553 27 1 -0.3633 -1.0255 -0.0654 28 1 3.1618 1.4049 -0.0654 29 1 1.6710 1.9722 -0.8554 30 1 1.7769 1.9318 0.9210 31 1 1.4562 -1.6703 -1.4089 32 1 2.1581 -0.1664 -2.0876 33 1 4.4421 -1.4826 2.4254 34 1 4.7427 -0.1574 1.2758 35 1 5.5963 -3.6161 2.1125 36 1 4.5625 -3.7473 0.6697 37 1 6.5408 -5.2436 0.5056 38 1 6.5718 -3.9877 -0.7562 39 1 8.7996 -4.2002 0.2815 40 1 8.0920 -3.9165 1.8912 41 1 12.4591 -1.1306 0.2528 42 1 7.0303 -0.4060 1.1656 43 1 7.0191 -1.6895 2.3985 44 1 1.3247 -1.4844 1.5875 45 1 2.4210 -0.1254 1.9891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602882328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:33 Heat of formation + Delta-G solvation = -62.766284 kcal Electronic energy + Delta-G solvation = -21601.450418 eV Core-core repulsion = 18617.858082 eV Total energy + Delta-G solvation = -2983.592335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.04998 -38.12806 -34.63198 -33.72596 -32.19166 -30.34722 -30.06418 -27.56302 -26.45966 -25.34816 -24.96840 -22.33338 -21.68022 -20.30391 -19.51302 -18.66883 -16.84372 -16.21529 -15.68246 -15.37638 -14.98329 -14.41260 -14.14679 -14.08315 -13.51706 -13.43218 -13.26421 -12.96855 -12.89683 -12.44069 -12.37206 -12.10030 -11.96628 -11.73230 -11.37161 -11.33881 -11.06635 -10.93313 -10.90995 -10.79987 -10.55319 -10.49773 -10.11562 -9.73983 -9.52620 -9.44534 -9.12783 -8.84907 -8.42577 -7.64795 -6.01551 -4.00388 3.38882 3.45680 3.51998 3.87385 4.29691 4.41510 4.51214 4.58884 4.72310 4.98058 5.05529 5.11405 5.29691 5.35291 5.40368 5.43724 5.46700 5.57209 5.62097 5.66045 5.69804 5.71970 5.79623 5.84939 5.90772 5.95262 5.96052 6.10028 6.16949 6.17960 6.28682 6.42369 6.49764 6.59252 6.77656 6.92997 6.97936 7.07046 7.40248 7.55887 7.68926 7.75800 7.96228 8.59920 9.03297 9.63055 11.11712 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027835 B = 0.004598 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.679939 B = 6088.365980 C = 6338.504253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 C -0.136 4.136 4 C 0.050 3.950 5 O -0.346 6.346 6 C 0.083 3.917 7 H 0.064 0.936 8 C 0.058 3.942 9 N -0.533 5.533 10 C 0.062 3.938 11 C -0.119 4.119 12 C -0.111 4.111 13 C 0.020 3.980 14 H 0.040 0.960 15 C -0.512 4.512 16 H 0.070 0.930 17 C 0.072 3.928 18 N -0.903 5.903 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.292 1.292 22 H -0.263 1.263 23 C 0.073 3.927 24 C -0.144 4.144 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.021 0.979 44 H 0.073 0.927 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.648 0.378 -1.002 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 C -0.193 4.193 4 C -0.027 4.027 5 O -0.264 6.264 6 C 0.024 3.976 7 H 0.082 0.918 8 C -0.071 4.071 9 N -0.257 5.257 10 C -0.066 4.066 11 C -0.157 4.157 12 C -0.150 4.150 13 C 0.001 3.999 14 H 0.058 0.942 15 C -0.550 4.550 16 H 0.088 0.912 17 C -0.129 4.129 18 N -0.541 5.541 19 Si 0.706 3.294 20 H -0.202 1.202 21 H -0.219 1.219 22 H -0.187 1.187 23 C -0.053 4.053 24 C -0.182 4.182 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.092 0.908 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.237 0.485 -1.667 22.305 hybrid contribution -0.175 -0.252 0.102 0.323 sum -22.413 0.233 -1.565 22.468 Atomic orbital electron populations 1.21748 0.93718 1.01830 1.02008 1.22109 0.95798 0.96536 0.95531 1.21769 1.02024 0.93999 1.01523 1.23670 0.85350 0.96935 0.96781 1.89139 1.27230 1.85866 1.24159 1.22765 0.94206 0.97839 0.82749 0.91849 1.22257 0.90466 0.99533 0.94824 1.61966 1.02134 1.02621 1.58996 1.22029 0.98585 0.88658 0.97361 1.21665 0.96124 0.97407 1.00531 1.21854 0.93993 0.99436 0.99669 1.19151 0.93101 0.90961 0.96687 0.94182 1.20975 0.92822 1.44040 0.97140 0.91201 1.25040 0.95000 0.94296 0.98599 1.69918 0.99929 1.48753 1.35538 0.86827 0.77003 0.79491 0.86058 1.20152 1.21896 1.18717 1.22253 0.87482 0.99453 0.96147 1.23116 0.97612 0.99187 0.98281 0.92365 0.92381 0.92519 0.91541 0.92589 0.92594 0.92685 0.89347 0.94453 0.90415 0.95872 0.92074 0.93109 0.91927 0.93042 0.93349 0.92748 0.91562 0.96074 0.90816 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.55 37.15 0.32 -0.66 16 2 C -0.10 -0.93 0.99 -152.51 -0.15 -1.08 16 3 C -0.14 -1.28 8.53 37.16 0.32 -0.96 16 4 C 0.05 0.55 6.63 38.21 0.25 0.80 16 5 O -0.35 -5.22 11.10 -35.23 -0.39 -5.61 16 6 C 0.08 1.08 3.30 -26.16 -0.09 0.99 16 7 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 8 C 0.06 0.87 4.43 -3.82 -0.02 0.85 16 9 N -0.53 -9.88 4.56 -234.68 -1.07 -10.95 16 10 C 0.06 1.05 5.30 -3.84 -0.02 1.03 16 11 C -0.12 -2.19 6.09 -26.65 -0.16 -2.36 16 12 C -0.11 -2.44 5.27 -26.60 -0.14 -2.58 16 13 C 0.02 0.49 1.95 -91.69 -0.18 0.32 16 14 H 0.04 1.03 5.25 -51.93 -0.27 0.75 16 15 C -0.51 -14.56 8.86 -34.44 -0.31 -14.87 16 16 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 19 Si 0.88 22.38 27.01 -169.99 -4.59 17.79 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.26 -6.49 6.78 56.52 0.38 -6.11 16 23 C 0.07 1.57 4.72 -3.83 -0.02 1.55 16 24 C -0.14 -1.43 5.81 -25.21 -0.15 -1.58 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.55 8.01 -51.93 -0.42 0.13 16 32 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 33 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.08 1.19 7.98 -51.93 -0.41 0.78 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.93 6.22 -51.92 -0.32 0.61 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.07 1.44 8.01 -51.93 -0.42 1.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 45 H 0.08 0.76 7.42 -51.93 -0.39 0.38 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -31.13 340.91 -9.03 -40.16 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -8.46 Total: -2.78 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -0.43 Total: -16.53 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.30 Total: -38.17 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.39 Total: -5.61 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.59 Total: 17.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.13 -9.03 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602882328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.605 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds