Wall clock time and date at job start Mon Mar 30 2020 07:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 110.82965 * 2 1 4 4 C 1.54993 * 110.90739 * 236.35880 * 2 1 3 5 5 O 1.44578 * 103.58784 * 204.85478 * 4 2 1 6 6 C 1.43743 * 106.86761 * 39.87455 * 5 4 2 7 7 H 1.09001 * 109.87660 * 93.17380 * 6 5 4 8 8 C 1.53001 * 109.87746 * 214.17148 * 6 5 4 9 9 N 1.46898 * 109.47146 * 298.29409 * 8 6 5 10 10 C 1.46839 * 111.00257 * 293.95151 * 9 8 6 11 11 C 1.53035 * 109.52653 * 174.15892 * 10 9 8 12 12 C 1.53126 * 109.27640 * 59.18359 * 11 10 9 13 13 C 1.53120 * 109.15673 * 302.34490 * 12 11 10 14 14 H 1.08994 * 109.50606 * 297.71149 * 13 12 11 15 15 C 1.50702 * 109.53344 * 177.61152 * 13 12 11 16 16 H 1.08000 * 120.00254 * 275.35459 * 15 13 12 17 17 C 1.37874 * 119.99883 * 95.35246 * 15 13 12 18 18 N 1.31511 * 120.00367 * 185.74892 * 17 15 13 19 19 Si 1.86802 * 120.00096 * 5.74924 * 17 15 13 20 20 H 1.48502 * 109.47295 * 84.77600 * 19 17 15 21 21 H 1.48495 * 109.47359 * 204.78181 * 19 17 15 22 22 H 1.48500 * 109.47098 * 324.78205 * 19 17 15 23 23 C 1.46844 * 110.99643 * 169.74455 * 9 8 6 24 24 C 1.54102 * 107.42162 * 333.67465 * 6 5 4 25 25 H 1.09004 * 109.46886 * 296.35045 * 1 2 3 26 26 H 1.08994 * 109.47724 * 56.34600 * 1 2 3 27 27 H 1.08996 * 109.47163 * 176.35353 * 1 2 3 28 28 H 1.09004 * 109.47333 * 183.65024 * 3 2 1 29 29 H 1.08999 * 109.47669 * 303.65378 * 3 2 1 30 30 H 1.09005 * 109.47076 * 63.65282 * 3 2 1 31 31 H 1.09003 * 110.61738 * 323.27392 * 4 2 1 32 32 H 1.08999 * 110.62183 * 86.27102 * 4 2 1 33 33 H 1.08996 * 109.46877 * 178.29232 * 8 6 5 34 34 H 1.09002 * 109.46932 * 58.30083 * 8 6 5 35 35 H 1.09000 * 109.46858 * 294.18052 * 10 9 8 36 36 H 1.09007 * 109.46066 * 54.14756 * 10 9 8 37 37 H 1.08996 * 109.50688 * 179.12314 * 11 10 9 38 38 H 1.08997 * 109.50608 * 299.24283 * 11 10 9 39 39 H 1.08996 * 109.52151 * 182.43998 * 12 11 10 40 40 H 1.08998 * 109.52337 * 62.24899 * 12 11 10 41 41 H 0.97002 * 120.00405 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.46700 * 305.85230 * 23 9 8 43 43 H 1.09001 * 109.46740 * 65.82401 * 23 9 8 44 44 H 1.09000 * 110.48381 * 120.63241 * 24 6 5 45 45 H 1.09000 * 110.48313 * 243.27304 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0740 1.4300 0.0000 4 6 2.0831 -0.8021 -1.2054 5 8 3.3955 -1.2176 -0.7635 6 6 3.2718 -1.5881 0.6198 7 1 3.0838 -2.6587 0.7013 8 6 4.5543 -1.2267 1.3718 9 7 5.6829 -1.9759 0.8035 10 6 5.5319 -3.4168 1.0428 11 6 6.6440 -4.1754 0.3150 12 6 8.0040 -3.6937 0.8279 13 6 8.1162 -2.1821 0.6108 14 1 8.0671 -1.9630 -0.4558 15 6 9.4277 -1.6893 1.1659 16 1 9.5127 -1.4454 2.2146 17 6 10.5191 -1.5498 0.3350 18 7 11.6913 -1.2291 0.8374 19 14 10.3327 -1.8164 -1.5045 20 1 9.8606 -0.5607 -2.1413 21 1 11.6441 -2.2028 -2.0841 22 1 9.3450 -2.8977 -1.7503 23 6 6.9613 -1.4813 1.3301 24 6 2.0825 -0.8013 1.2038 25 1 -0.3633 0.4562 0.9209 26 1 -0.3634 0.5695 -0.8553 27 1 -0.3633 -1.0255 -0.0654 28 1 3.1618 1.4049 -0.0654 29 1 1.6710 1.9722 -0.8554 30 1 1.7769 1.9318 0.9210 31 1 1.4562 -1.6703 -1.4089 32 1 2.1581 -0.1664 -2.0876 33 1 4.4421 -1.4826 2.4254 34 1 4.7427 -0.1574 1.2758 35 1 5.5963 -3.6161 2.1125 36 1 4.5625 -3.7473 0.6697 37 1 6.5408 -5.2436 0.5056 38 1 6.5718 -3.9877 -0.7562 39 1 8.7996 -4.2002 0.2815 40 1 8.0920 -3.9165 1.8912 41 1 12.4591 -1.1306 0.2528 42 1 7.0303 -0.4060 1.1656 43 1 7.0191 -1.6895 2.3985 44 1 1.3247 -1.4844 1.5875 45 1 2.4210 -0.1254 1.9891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602882328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:32 Heat of formation + Delta-G solvation = -82.743612 kcal Electronic energy + Delta-G solvation = -21602.316700 eV Core-core repulsion = 18617.858082 eV Total energy + Delta-G solvation = -2984.458617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00698 -39.61475 -35.80091 -35.15703 -34.05174 -31.99460 -31.34821 -28.22439 -27.38684 -26.91630 -26.42328 -23.74850 -23.25954 -21.54298 -20.51058 -20.21741 -18.98284 -17.37705 -16.77884 -16.37094 -16.31582 -15.96841 -15.54218 -15.15377 -15.03279 -14.78790 -14.51788 -14.39113 -14.12073 -13.78406 -13.64930 -13.33269 -12.95664 -12.89607 -12.80366 -12.68872 -12.48634 -12.36947 -12.12385 -11.83123 -11.76681 -11.68133 -11.51999 -11.41439 -11.29594 -11.02071 -10.82356 -10.62470 -10.36387 -9.09317 -8.29911 -6.32554 1.35048 1.36220 1.48627 2.35626 2.88176 3.06117 3.20433 3.52958 3.78496 3.92333 3.99412 4.10656 4.12971 4.28711 4.31813 4.36300 4.45750 4.48538 4.61000 4.66592 4.69711 4.76492 4.80550 4.83214 4.87069 4.88191 4.91993 5.00170 5.02081 5.07384 5.08934 5.15716 5.21522 5.25703 5.28057 5.34666 5.46426 5.56503 5.65592 5.75613 6.09743 6.18170 6.35475 6.42230 6.75170 7.33801 8.87102 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027835 B = 0.004598 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.679939 B = 6088.365980 C = 6338.504253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C -0.135 4.135 4 C 0.044 3.956 5 O -0.382 6.382 6 C 0.085 3.915 7 H 0.069 0.931 8 C 0.057 3.943 9 N -0.545 5.545 10 C 0.062 3.938 11 C -0.113 4.113 12 C -0.109 4.109 13 C 0.018 3.982 14 H 0.030 0.970 15 C -0.515 4.515 16 H 0.031 0.969 17 C 0.016 3.984 18 N -0.950 5.950 19 Si 0.942 3.058 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.250 1.250 23 C 0.085 3.915 24 C -0.138 4.138 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.044 0.956 41 H 0.266 0.734 42 H 0.052 0.948 43 H 0.015 0.985 44 H 0.094 0.906 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.864 -0.559 -1.842 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C -0.193 4.193 4 C -0.033 4.033 5 O -0.301 6.301 6 C 0.027 3.973 7 H 0.087 0.913 8 C -0.071 4.071 9 N -0.269 5.269 10 C -0.065 4.065 11 C -0.150 4.150 12 C -0.147 4.147 13 C -0.001 4.001 14 H 0.048 0.952 15 C -0.553 4.553 16 H 0.049 0.951 17 C -0.181 4.181 18 N -0.590 5.590 19 Si 0.766 3.234 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.173 1.173 23 C -0.042 4.042 24 C -0.177 4.177 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.112 0.888 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.487 -0.457 -2.503 25.613 hybrid contribution 0.818 0.079 0.440 0.932 sum -24.668 -0.378 -2.063 24.757 Atomic orbital electron populations 1.21718 0.91695 1.02607 1.02809 1.22091 0.97258 0.95783 0.94359 1.21763 1.00317 0.94695 1.02493 1.23866 0.84148 0.97757 0.97510 1.89093 1.29680 1.86226 1.25149 1.22777 0.93885 0.98535 0.82137 0.91311 1.22350 0.90253 0.98570 0.95914 1.61899 1.01632 1.03939 1.59451 1.22090 0.99294 0.87389 0.97743 1.21615 0.93997 0.99447 0.99976 1.21721 0.96225 0.97307 0.99473 1.19111 0.92077 0.92996 0.95914 0.95215 1.21254 0.95085 1.43487 0.95516 0.95072 1.25851 0.94547 0.94305 1.03356 1.70050 1.00907 1.50680 1.37338 0.85816 0.77424 0.79873 0.80267 1.19629 1.21220 1.17331 1.21907 0.88574 0.98380 0.95382 1.23110 0.96815 0.99342 0.98386 0.91528 0.91691 0.91751 0.94159 0.91709 0.91591 0.91393 0.89229 0.93065 0.91435 0.95200 0.89393 0.89948 0.92622 0.94355 0.93762 0.92538 0.92919 0.96687 0.88753 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.55 71.98 0.62 -0.82 16 2 C -0.09 -1.52 0.99 -50.89 -0.05 -1.57 16 3 C -0.14 -2.33 8.53 71.98 0.61 -1.72 16 4 C 0.04 0.87 6.63 72.66 0.48 1.35 16 5 O -0.38 -10.93 11.10 -148.98 -1.65 -12.58 16 6 C 0.08 2.01 3.30 30.97 0.10 2.12 16 7 H 0.07 1.55 6.43 -2.39 -0.02 1.54 16 8 C 0.06 1.64 4.43 86.30 0.38 2.02 16 9 N -0.54 -19.52 4.56 -896.38 -4.09 -23.61 16 10 C 0.06 1.95 5.30 86.33 0.46 2.41 16 11 C -0.11 -3.86 6.09 30.65 0.19 -3.67 16 12 C -0.11 -4.71 5.27 30.68 0.16 -4.55 16 13 C 0.02 0.90 1.95 -11.48 -0.02 0.88 16 14 H 0.03 1.51 5.25 -2.39 -0.01 1.50 16 15 C -0.51 -30.36 8.86 25.60 0.23 -30.13 16 16 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 17 C 0.02 0.99 5.47 84.65 0.46 1.45 16 18 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 19 Si 0.94 46.74 27.01 68.60 1.85 48.59 16 20 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 22 H -0.25 -11.75 6.78 99.48 0.67 -11.08 16 23 C 0.09 3.68 4.72 86.33 0.41 4.08 16 24 C -0.14 -2.35 5.81 31.58 0.18 -2.17 16 25 H 0.07 0.64 8.14 -2.38 -0.02 0.63 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.63 8.09 -2.39 -0.02 0.61 16 28 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.07 1.16 8.01 -2.39 -0.02 1.14 16 32 H 0.09 1.70 8.05 -2.39 -0.02 1.68 16 33 H 0.05 1.33 8.12 -2.39 -0.02 1.31 16 34 H 0.07 2.05 7.98 -2.39 -0.02 2.03 16 35 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 2.34 6.22 -2.38 -0.01 2.32 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 42 H 0.05 2.36 8.01 -2.39 -0.02 2.34 16 43 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.09 1.24 7.86 -2.39 -0.02 1.22 16 45 H 0.08 1.35 7.42 -2.39 -0.02 1.34 16 Total: -1.00 -68.86 340.91 1.50 -67.36 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.89 Total: 10.97 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 4.21 Total: -30.32 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -3.79 Total: -84.02 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -1.65 Total: -12.58 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.85 Total: 48.59 kcal Total: -68.86 1.50 -67.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602882328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.384 kcal (2) G-P(sol) polarization free energy of solvation -68.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds