Wall clock time and date at job start Mon Mar 30 2020 07:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.56642 * 2 1 4 4 C 1.54482 * 110.51411 * 237.31892 * 2 1 3 5 5 O 1.44423 * 104.80062 * 265.33593 * 4 2 1 6 6 C 1.44429 * 105.27437 * 319.48477 * 5 4 2 7 7 H 1.08995 * 110.46617 * 281.63202 * 6 5 4 8 8 C 1.53000 * 110.36679 * 159.34843 * 6 5 4 9 9 N 1.46892 * 109.47670 * 66.02018 * 8 6 5 10 10 C 1.46846 * 111.00255 * 195.92208 * 9 8 6 11 11 C 1.53037 * 109.52555 * 174.16099 * 10 9 8 12 12 C 1.53113 * 109.27913 * 59.17743 * 11 10 9 13 13 C 1.53122 * 109.21314 * 302.31165 * 12 11 10 14 14 H 1.09000 * 109.50653 * 297.74961 * 13 12 11 15 15 C 1.50704 * 109.50211 * 177.62557 * 13 12 11 16 16 H 1.08001 * 120.00156 * 240.00188 * 15 13 12 17 17 C 1.37871 * 119.99761 * 60.01080 * 15 13 12 18 18 N 1.31513 * 120.00413 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99777 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47421 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47422 * 119.99448 * 19 17 15 22 22 H 1.48507 * 109.46966 * 239.99441 * 19 17 15 23 23 C 1.46845 * 111.00144 * 71.71100 * 9 8 6 24 24 C 1.54471 * 104.80377 * 40.51595 * 6 5 4 25 25 H 1.08996 * 109.47314 * 297.32363 * 1 2 3 26 26 H 1.09007 * 109.46974 * 57.32146 * 1 2 3 27 27 H 1.08999 * 109.47028 * 177.32263 * 1 2 3 28 28 H 1.08997 * 109.47313 * 182.67598 * 3 2 1 29 29 H 1.09004 * 109.46929 * 302.68093 * 3 2 1 30 30 H 1.09000 * 109.46996 * 62.67463 * 3 2 1 31 31 H 1.08999 * 110.36651 * 24.16679 * 4 2 1 32 32 H 1.08999 * 110.37207 * 146.39188 * 4 2 1 33 33 H 1.09004 * 109.47221 * 306.01324 * 8 6 5 34 34 H 1.09001 * 109.46850 * 186.02318 * 8 6 5 35 35 H 1.09003 * 109.46516 * 54.13931 * 10 9 8 36 36 H 1.09007 * 109.45222 * 294.16597 * 10 9 8 37 37 H 1.09009 * 109.49920 * 299.23668 * 11 10 9 38 38 H 1.08994 * 109.50605 * 179.12274 * 11 10 9 39 39 H 1.08991 * 109.52748 * 62.25286 * 12 11 10 40 40 H 1.09002 * 109.52360 * 182.38183 * 12 11 10 41 41 H 0.97002 * 120.00100 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.46135 * 305.85563 * 23 9 8 43 43 H 1.08992 * 109.46379 * 65.83760 * 23 9 8 44 44 H 1.09002 * 110.51326 * 94.66449 * 24 6 5 45 45 H 1.08996 * 110.51165 * 217.37332 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0714 -0.7812 -1.2178 5 8 2.3070 -2.1177 -0.7237 6 6 2.8757 -1.9421 0.5922 7 1 3.9304 -1.6770 0.5193 8 6 2.7041 -3.2167 1.4209 9 7 3.5027 -4.2976 0.8280 10 6 3.0854 -5.6062 1.3475 11 6 3.8348 -6.7143 0.6042 12 6 5.3415 -6.5240 0.7987 13 6 5.7434 -5.1355 0.2934 14 1 5.5346 -5.0620 -0.7739 15 6 7.2151 -4.9187 0.5351 16 1 7.5451 -4.1019 1.1599 17 6 8.1400 -5.7629 -0.0416 18 7 7.7382 -6.7577 -0.8022 19 14 9.9642 -5.4937 0.2574 20 1 10.1524 -4.3157 1.1417 21 1 10.5424 -6.6977 0.9065 22 1 10.6481 -5.2535 -1.0387 23 6 4.9373 -4.0726 1.0463 24 6 2.0714 -0.7813 1.2181 25 1 -0.3634 0.4717 0.9130 26 1 -0.3633 0.5549 -0.8651 27 1 -0.3633 -1.0265 -0.0480 28 1 3.1562 1.4121 -0.0480 29 1 1.6755 1.9676 -0.8650 30 1 1.7534 1.9384 0.9130 31 1 1.3311 -0.7974 -2.0177 32 1 3.0014 -0.3361 -1.5713 33 1 1.6529 -3.5050 1.4308 34 1 3.0403 -3.0344 2.4417 35 1 2.0127 -5.7305 1.1993 36 1 3.3141 -5.6640 2.4118 37 1 3.5959 -6.6656 -0.4583 38 1 3.5364 -7.6847 1.0007 39 1 5.5862 -6.6113 1.8572 40 1 5.8806 -7.2863 0.2361 41 1 8.3890 -7.3518 -1.2076 42 1 5.2097 -3.0831 0.6792 43 1 5.1572 -4.1379 2.1118 44 1 1.2490 -1.1675 1.8203 45 1 2.7219 -0.1470 1.8203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602882329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:35 Heat of formation + Delta-G solvation = -63.665587 kcal Electronic energy + Delta-G solvation = -21547.738674 eV Core-core repulsion = 18564.107342 eV Total energy + Delta-G solvation = -2983.631332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.88086 -37.94690 -34.58380 -33.69966 -32.06855 -29.86550 -29.78857 -27.52566 -26.17072 -25.23685 -24.90067 -22.46143 -21.23878 -20.46470 -19.37395 -18.49281 -16.49284 -15.96273 -15.44664 -15.25315 -14.84140 -14.43715 -14.10028 -13.99485 -13.54241 -13.26824 -13.12741 -12.88519 -12.67479 -12.35236 -12.22543 -11.84732 -11.69336 -11.60842 -11.42059 -11.17351 -10.93511 -10.77217 -10.67052 -10.60618 -10.57799 -10.40201 -10.03354 -9.76260 -9.44713 -9.34523 -8.93847 -8.61337 -8.24916 -7.52970 -5.92130 -3.98173 3.32673 3.40564 3.44072 4.05253 4.38685 4.44507 4.54145 4.69888 4.81452 5.16297 5.22043 5.24325 5.37806 5.42964 5.49825 5.54206 5.57961 5.67465 5.72549 5.77974 5.81551 5.82914 5.90469 5.95905 5.99957 6.06340 6.12688 6.18322 6.25244 6.34262 6.47038 6.58646 6.80017 6.82731 7.05512 7.12299 7.30809 7.47963 7.76972 7.81587 7.91629 8.16869 8.24859 8.54697 9.06261 9.65761 11.13853 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.004641 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.744481 B = 6032.243813 C = 6741.802050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 C -0.138 4.138 4 C 0.049 3.951 5 O -0.347 6.347 6 C 0.083 3.917 7 H 0.070 0.930 8 C 0.063 3.937 9 N -0.531 5.531 10 C 0.065 3.935 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.055 3.945 14 H 0.035 0.965 15 C -0.513 4.513 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.067 3.933 24 C -0.143 4.143 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.028 0.972 40 H 0.090 0.910 41 H 0.258 0.742 42 H 0.057 0.943 43 H 0.016 0.984 44 H 0.074 0.926 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.455 11.780 3.341 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 C -0.195 4.195 4 C -0.028 4.028 5 O -0.265 6.265 6 C 0.025 3.975 7 H 0.088 0.912 8 C -0.066 4.066 9 N -0.255 5.255 10 C -0.063 4.063 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.036 3.964 14 H 0.053 0.947 15 C -0.552 4.552 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.060 4.060 24 C -0.181 4.181 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.093 0.907 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.509 11.418 2.627 17.882 hybrid contribution 1.226 0.350 1.161 1.725 sum -12.283 11.768 3.788 17.427 Atomic orbital electron populations 1.21820 0.93668 1.02181 1.01472 1.21947 0.96466 0.95872 0.95829 1.21841 1.01066 0.94800 1.01789 1.23506 0.99661 0.83946 0.95732 1.89292 1.82657 1.24003 1.30572 1.22998 0.97031 0.93954 0.83505 0.91182 1.22082 0.98628 0.91353 0.94544 1.61908 1.05033 1.00647 1.57909 1.22011 0.98276 0.89973 0.96002 1.21669 0.98464 0.95183 1.00168 1.21645 0.91454 1.02443 0.99289 1.18681 0.92558 0.89364 0.95775 0.94712 1.21190 0.91035 1.13036 1.29903 0.92902 1.24929 0.98608 0.95244 0.95065 1.69908 1.33492 1.16808 1.32468 0.86592 0.85817 0.77976 0.77915 1.19911 1.21126 1.21064 1.22373 0.85121 1.00844 0.97688 1.23127 1.00306 0.97134 0.97563 0.92706 0.92659 0.92057 0.92279 0.92486 0.92483 0.89576 0.92498 0.91016 0.94293 0.92498 0.96163 0.92012 0.93624 0.95291 0.89146 0.93166 0.92410 0.96561 0.90698 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.29 37.16 0.31 -0.90 16 2 C -0.10 -1.04 1.05 -152.94 -0.16 -1.20 16 3 C -0.14 -1.19 8.31 37.16 0.31 -0.88 16 4 C 0.05 0.61 6.74 37.93 0.26 0.87 16 5 O -0.35 -5.77 11.32 -35.23 -0.40 -6.17 16 6 C 0.08 1.25 3.29 -25.96 -0.09 1.16 16 7 H 0.07 1.15 6.58 -51.93 -0.34 0.80 16 8 C 0.06 0.99 4.58 -3.83 -0.02 0.98 16 9 N -0.53 -10.41 4.59 -234.59 -1.08 -11.48 16 10 C 0.07 1.21 5.44 -3.83 -0.02 1.19 16 11 C -0.12 -2.40 6.09 -26.65 -0.16 -2.56 16 12 C -0.11 -2.69 5.02 -26.61 -0.13 -2.83 16 13 C 0.05 1.42 2.27 -91.62 -0.21 1.22 16 14 H 0.03 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.51 -14.34 8.57 -34.44 -0.30 -14.64 16 16 H 0.05 1.46 7.75 -52.49 -0.41 1.05 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.80 11.35 55.43 0.63 -25.17 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.07 1.47 4.54 -3.76 -0.02 1.45 16 24 C -0.14 -1.62 5.92 -25.17 -0.15 -1.77 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.06 0.70 7.82 -51.93 -0.41 0.30 16 33 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 34 H 0.04 0.58 8.06 -51.93 -0.42 0.17 16 35 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 1.33 8.14 -51.92 -0.42 0.90 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.06 1.26 6.46 -51.93 -0.34 0.93 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.80 7.46 -51.93 -0.39 0.41 16 45 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -29.67 341.22 -9.65 -39.33 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.45 Total: -1.90 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -0.47 Total: -16.25 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.45 Total: -36.65 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.40 Total: -6.17 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.67 -9.65 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602882329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.340 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds