Wall clock time and date at job start Mon Mar 30 2020 07:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.56642 * 2 1 4 4 C 1.54482 * 110.51411 * 237.31892 * 2 1 3 5 5 O 1.44423 * 104.80062 * 265.33593 * 4 2 1 6 6 C 1.44429 * 105.27437 * 319.48477 * 5 4 2 7 7 H 1.08995 * 110.46617 * 281.63202 * 6 5 4 8 8 C 1.53000 * 110.36679 * 159.34843 * 6 5 4 9 9 N 1.46892 * 109.47670 * 66.02018 * 8 6 5 10 10 C 1.46846 * 111.00255 * 195.92208 * 9 8 6 11 11 C 1.53037 * 109.52555 * 174.16099 * 10 9 8 12 12 C 1.53113 * 109.27913 * 59.17743 * 11 10 9 13 13 C 1.53122 * 109.21314 * 302.31165 * 12 11 10 14 14 H 1.09000 * 109.50653 * 297.74961 * 13 12 11 15 15 C 1.50704 * 109.50211 * 177.62557 * 13 12 11 16 16 H 1.08001 * 120.00156 * 240.00188 * 15 13 12 17 17 C 1.37871 * 119.99761 * 60.01080 * 15 13 12 18 18 N 1.31513 * 120.00413 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99777 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47421 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47422 * 119.99448 * 19 17 15 22 22 H 1.48507 * 109.46966 * 239.99441 * 19 17 15 23 23 C 1.46845 * 111.00144 * 71.71100 * 9 8 6 24 24 C 1.54471 * 104.80377 * 40.51595 * 6 5 4 25 25 H 1.08996 * 109.47314 * 297.32363 * 1 2 3 26 26 H 1.09007 * 109.46974 * 57.32146 * 1 2 3 27 27 H 1.08999 * 109.47028 * 177.32263 * 1 2 3 28 28 H 1.08997 * 109.47313 * 182.67598 * 3 2 1 29 29 H 1.09004 * 109.46929 * 302.68093 * 3 2 1 30 30 H 1.09000 * 109.46996 * 62.67463 * 3 2 1 31 31 H 1.08999 * 110.36651 * 24.16679 * 4 2 1 32 32 H 1.08999 * 110.37207 * 146.39188 * 4 2 1 33 33 H 1.09004 * 109.47221 * 306.01324 * 8 6 5 34 34 H 1.09001 * 109.46850 * 186.02318 * 8 6 5 35 35 H 1.09003 * 109.46516 * 54.13931 * 10 9 8 36 36 H 1.09007 * 109.45222 * 294.16597 * 10 9 8 37 37 H 1.09009 * 109.49920 * 299.23668 * 11 10 9 38 38 H 1.08994 * 109.50605 * 179.12274 * 11 10 9 39 39 H 1.08991 * 109.52748 * 62.25286 * 12 11 10 40 40 H 1.09002 * 109.52360 * 182.38183 * 12 11 10 41 41 H 0.97002 * 120.00100 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.46135 * 305.85563 * 23 9 8 43 43 H 1.08992 * 109.46379 * 65.83760 * 23 9 8 44 44 H 1.09002 * 110.51326 * 94.66449 * 24 6 5 45 45 H 1.08996 * 110.51165 * 217.37332 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0714 -0.7812 -1.2178 5 8 2.3070 -2.1177 -0.7237 6 6 2.8757 -1.9421 0.5922 7 1 3.9304 -1.6770 0.5193 8 6 2.7041 -3.2167 1.4209 9 7 3.5027 -4.2976 0.8280 10 6 3.0854 -5.6062 1.3475 11 6 3.8348 -6.7143 0.6042 12 6 5.3415 -6.5240 0.7987 13 6 5.7434 -5.1355 0.2934 14 1 5.5346 -5.0620 -0.7739 15 6 7.2151 -4.9187 0.5351 16 1 7.5451 -4.1019 1.1599 17 6 8.1400 -5.7629 -0.0416 18 7 7.7382 -6.7577 -0.8022 19 14 9.9642 -5.4937 0.2574 20 1 10.1524 -4.3157 1.1417 21 1 10.5424 -6.6977 0.9065 22 1 10.6481 -5.2535 -1.0387 23 6 4.9373 -4.0726 1.0463 24 6 2.0714 -0.7813 1.2181 25 1 -0.3634 0.4717 0.9130 26 1 -0.3633 0.5549 -0.8651 27 1 -0.3633 -1.0265 -0.0480 28 1 3.1562 1.4121 -0.0480 29 1 1.6755 1.9676 -0.8650 30 1 1.7534 1.9384 0.9130 31 1 1.3311 -0.7974 -2.0177 32 1 3.0014 -0.3361 -1.5713 33 1 1.6529 -3.5050 1.4308 34 1 3.0403 -3.0344 2.4417 35 1 2.0127 -5.7305 1.1993 36 1 3.3141 -5.6640 2.4118 37 1 3.5959 -6.6656 -0.4583 38 1 3.5364 -7.6847 1.0007 39 1 5.5862 -6.6113 1.8572 40 1 5.8806 -7.2863 0.2361 41 1 8.3890 -7.3518 -1.2076 42 1 5.2097 -3.0831 0.6792 43 1 5.1572 -4.1379 2.1118 44 1 1.2490 -1.1675 1.8203 45 1 2.7219 -0.1470 1.8203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602882329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:35 Heat of formation + Delta-G solvation = -81.597399 kcal Electronic energy + Delta-G solvation = -21548.516256 eV Core-core repulsion = 18564.107342 eV Total energy + Delta-G solvation = -2984.408914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95565 -39.54893 -35.85359 -35.24871 -33.79989 -31.69780 -31.15586 -28.20235 -27.20142 -26.95510 -26.41267 -23.99754 -23.04382 -21.73605 -20.45872 -20.11731 -18.45611 -17.33869 -16.57228 -16.52450 -16.47355 -16.01174 -15.49755 -15.03154 -14.86747 -14.67115 -14.41176 -14.28349 -14.00280 -13.90982 -13.39629 -13.33230 -12.96484 -12.86771 -12.74240 -12.57140 -12.42736 -12.36116 -12.13146 -11.82006 -11.74328 -11.60907 -11.52868 -11.46793 -11.31874 -10.83184 -10.67485 -10.47388 -10.37908 -9.06129 -8.07808 -6.22608 1.39903 1.40991 1.52809 2.42497 2.94285 3.18655 3.19107 3.55502 3.78060 3.93423 4.04124 4.18035 4.21356 4.30593 4.38826 4.39321 4.49216 4.57589 4.64939 4.66440 4.74051 4.76456 4.82284 4.84323 4.87223 4.89352 4.97327 5.03936 5.07911 5.11112 5.13717 5.20304 5.26524 5.32971 5.40048 5.45845 5.52300 5.63156 5.95407 6.04607 6.14295 6.22723 6.41002 6.47072 6.90414 7.45354 8.97219 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.004641 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.744481 B = 6032.243813 C = 6741.802050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C -0.135 4.135 4 C 0.040 3.960 5 O -0.382 6.382 6 C 0.079 3.921 7 H 0.047 0.953 8 C 0.064 3.936 9 N -0.548 5.548 10 C 0.068 3.932 11 C -0.111 4.111 12 C -0.103 4.103 13 C 0.053 3.947 14 H -0.010 1.010 15 C -0.536 4.536 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.281 1.281 23 C 0.084 3.916 24 C -0.135 4.135 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.057 0.943 41 H 0.260 0.740 42 H 0.051 0.949 43 H 0.016 0.984 44 H 0.087 0.913 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 13.152 4.760 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C -0.192 4.192 4 C -0.036 4.036 5 O -0.301 6.301 6 C 0.021 3.979 7 H 0.065 0.935 8 C -0.064 4.064 9 N -0.273 5.273 10 C -0.060 4.060 11 C -0.149 4.149 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.008 0.992 15 C -0.574 4.574 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.782 3.218 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.207 1.207 23 C -0.044 4.044 24 C -0.173 4.173 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.035 0.965 44 H 0.106 0.894 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.775 12.804 4.052 19.966 hybrid contribution 1.600 -0.086 0.650 1.729 sum -13.175 12.718 4.702 18.906 Atomic orbital electron populations 1.21799 0.92362 1.01856 1.02786 1.21932 0.97419 0.96253 0.93901 1.21829 1.00555 0.93817 1.03043 1.23717 0.99916 0.82838 0.97178 1.89243 1.82795 1.26488 1.31542 1.23008 0.96427 0.94964 0.83487 0.93548 1.22188 0.98703 0.90401 0.95115 1.61835 1.03762 1.02374 1.59281 1.22022 0.99451 0.88521 0.95959 1.21584 0.95762 0.97716 0.99802 1.21449 0.94136 1.00448 0.98083 1.18597 0.92666 0.91718 0.93605 0.99226 1.21541 0.92549 1.13161 1.30167 0.93054 1.25746 1.03190 0.94890 0.94729 1.70058 1.34955 1.17475 1.33094 0.85539 0.80168 0.78199 0.77939 1.19072 1.20433 1.20661 1.21997 0.86689 0.98971 0.96711 1.23100 1.00315 0.95896 0.97978 0.91232 0.91566 0.93169 0.93086 0.91427 0.91066 0.88570 0.93098 0.89371 0.92875 0.89596 0.95183 0.93634 0.91015 0.95660 0.92439 0.93076 0.93053 0.96544 0.89431 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.29 71.98 0.60 -1.40 16 2 C -0.09 -1.75 1.05 -51.16 -0.05 -1.81 16 3 C -0.14 -2.02 8.31 71.98 0.60 -1.42 16 4 C 0.04 0.99 6.74 72.49 0.49 1.47 16 5 O -0.38 -12.67 11.32 -148.98 -1.69 -14.35 16 6 C 0.08 2.32 3.29 31.09 0.10 2.43 16 7 H 0.05 1.55 6.58 -2.39 -0.02 1.54 16 8 C 0.06 1.92 4.58 86.30 0.40 2.32 16 9 N -0.55 -21.21 4.59 -896.10 -4.12 -25.33 16 10 C 0.07 2.41 5.44 86.33 0.47 2.88 16 11 C -0.11 -4.52 6.09 30.64 0.19 -4.33 16 12 C -0.10 -5.17 5.02 30.67 0.15 -5.01 16 13 C 0.05 2.85 2.27 -11.44 -0.03 2.82 16 14 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 15 C -0.54 -30.82 8.57 25.60 0.22 -30.60 16 16 H 0.05 2.89 7.75 -2.91 -0.02 2.86 16 17 C 0.01 0.75 5.30 84.65 0.45 1.19 16 18 N -0.92 -54.91 11.35 21.44 0.24 -54.66 16 19 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 C 0.08 3.76 4.54 86.37 0.39 4.15 16 24 C -0.13 -2.76 5.92 31.61 0.19 -2.58 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.84 8.08 -2.39 -0.02 0.82 16 29 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 2.08 7.87 -2.39 -0.02 2.07 16 32 H 0.05 1.27 7.82 -2.39 -0.02 1.25 16 33 H 0.09 2.38 7.87 -2.38 -0.02 2.36 16 34 H 0.05 1.47 8.06 -2.39 -0.02 1.45 16 35 H 0.09 2.58 7.96 -2.39 -0.02 2.56 16 36 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 3.25 6.15 -2.39 -0.01 3.23 16 41 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.05 2.32 6.46 -2.39 -0.02 2.31 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.09 1.59 7.46 -2.39 -0.02 1.57 16 45 H 0.09 1.58 7.73 -2.39 -0.02 1.56 16 Total: -1.00 -65.95 341.22 1.54 -64.41 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.92 Total: 13.07 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 4.16 Total: -29.89 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -3.87 Total: -79.99 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -1.69 Total: -14.35 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.95 1.54 -64.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602882329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.188 kcal (2) G-P(sol) polarization free energy of solvation -65.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds