Wall clock time and date at job start Mon Mar 30 2020 07:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 110.80259 * 2 1 4 4 C 1.54996 * 110.90666 * 236.33172 * 2 1 3 5 5 O 1.44580 * 103.58284 * 204.85771 * 4 2 1 6 6 C 1.43745 * 106.87084 * 39.88040 * 5 4 2 7 7 H 1.08999 * 109.87745 * 93.16826 * 6 5 4 8 8 C 1.53000 * 109.87837 * 214.16641 * 6 5 4 9 9 N 1.46895 * 109.47682 * 295.22147 * 8 6 5 10 10 C 1.46840 * 111.00329 * 160.00250 * 9 8 6 11 11 C 1.53041 * 109.52612 * 185.84013 * 10 9 8 12 12 C 1.53123 * 109.30796 * 300.84317 * 11 10 9 13 13 C 1.53117 * 109.15638 * 57.59414 * 12 11 10 14 14 H 1.09005 * 109.50101 * 62.36601 * 13 12 11 15 15 C 1.50708 * 109.50303 * 182.43942 * 13 12 11 16 16 H 1.07994 * 119.99597 * 119.64317 * 15 13 12 17 17 C 1.37881 * 119.99908 * 299.92718 * 15 13 12 18 18 N 1.31514 * 119.99617 * 179.97438 * 17 15 13 19 19 Si 1.86802 * 119.99980 * 359.97438 * 17 15 13 20 20 H 1.48500 * 109.46844 * 90.00388 * 19 17 15 21 21 H 1.48498 * 109.46839 * 210.00277 * 19 17 15 22 22 H 1.48502 * 109.47191 * 330.00497 * 19 17 15 23 23 C 1.46842 * 111.00112 * 284.21752 * 9 8 6 24 24 C 1.54096 * 107.41915 * 333.67072 * 6 5 4 25 25 H 1.09005 * 109.47442 * 296.37174 * 1 2 3 26 26 H 1.09002 * 109.47577 * 56.37647 * 1 2 3 27 27 H 1.09011 * 109.47208 * 176.36949 * 1 2 3 28 28 H 1.09005 * 109.46913 * 183.62566 * 3 2 1 29 29 H 1.08995 * 109.47246 * 303.62546 * 3 2 1 30 30 H 1.09000 * 109.47512 * 63.63256 * 3 2 1 31 31 H 1.08999 * 110.62004 * 323.27620 * 4 2 1 32 32 H 1.08994 * 110.61837 * 86.28112 * 4 2 1 33 33 H 1.08997 * 109.47199 * 175.21810 * 8 6 5 34 34 H 1.09005 * 109.46438 * 55.22389 * 8 6 5 35 35 H 1.08999 * 109.46820 * 305.86140 * 10 9 8 36 36 H 1.09001 * 109.46087 * 65.82186 * 10 9 8 37 37 H 1.08997 * 109.49999 * 60.76733 * 11 10 9 38 38 H 1.09005 * 109.50222 * 180.88369 * 11 10 9 39 39 H 1.08991 * 109.49296 * 297.70797 * 12 11 10 40 40 H 1.09001 * 109.55336 * 177.51560 * 12 11 10 41 41 H 0.97004 * 119.99432 * 179.97438 * 18 17 15 42 42 H 1.09009 * 109.46290 * 54.14251 * 23 9 8 43 43 H 1.09000 * 109.45209 * 294.16752 * 23 9 8 44 44 H 1.09000 * 110.48692 * 120.63129 * 24 6 5 45 45 H 1.09005 * 110.48509 * 243.14345 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0733 1.4302 0.0000 4 6 2.0830 -0.8027 -1.2050 5 8 3.3954 -1.2180 -0.7628 6 6 3.2717 -1.5880 0.6207 7 1 3.0836 -2.6585 0.7026 8 6 4.5542 -1.2264 1.3726 9 7 5.6692 -2.0298 0.8538 10 6 6.9603 -1.4128 1.1832 11 6 8.0884 -2.1944 0.5058 12 6 8.0580 -3.6474 0.9879 13 6 6.6858 -4.2514 0.6771 14 1 6.5266 -4.2573 -0.4013 15 6 6.6266 -5.6628 1.2020 16 1 5.8896 -5.9325 1.9439 17 6 7.5173 -6.6083 0.7395 18 7 7.4660 -7.8398 1.1980 19 14 8.7968 -6.1398 -0.5384 20 1 10.0302 -5.6729 0.1442 21 1 9.1135 -7.3227 -1.3784 22 1 8.2638 -5.0515 -1.3967 23 6 5.5985 -3.4102 1.3495 24 6 2.0824 -0.8009 1.2042 25 1 -0.3634 0.4565 0.9207 26 1 -0.3634 0.5690 -0.8557 27 1 -0.3634 -1.0257 -0.0651 28 1 3.1611 1.4056 -0.0650 29 1 1.6704 1.9720 -0.8557 30 1 1.7757 1.9320 0.9207 31 1 1.4562 -1.6710 -1.4081 32 1 2.1582 -0.1673 -2.0874 33 1 4.4224 -1.4310 2.4351 34 1 4.7722 -0.1678 1.2308 35 1 6.9706 -0.3814 0.8307 36 1 7.1053 -1.4286 2.2634 37 1 7.9516 -2.1672 -0.5752 38 1 9.0477 -1.7455 0.7633 39 1 8.2342 -3.6776 2.0631 40 1 8.8320 -4.2183 0.4748 41 1 8.0924 -8.5051 0.8723 42 1 4.6194 -3.8297 1.1176 43 1 5.7500 -3.4165 2.4289 44 1 1.3245 -1.4838 1.5882 45 1 2.4205 -0.1263 1.9908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602882330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:38 Heat of formation + Delta-G solvation = -56.056515 kcal Electronic energy + Delta-G solvation = -21668.633908 eV Core-core repulsion = 18685.332530 eV Total energy + Delta-G solvation = -2983.301378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.97357 -38.19610 -34.60148 -33.80465 -32.23291 -30.34717 -30.02391 -27.55895 -26.43637 -25.41178 -24.88139 -22.69643 -21.11135 -20.61682 -19.51758 -18.75869 -16.69557 -16.16424 -15.60390 -15.31410 -15.17128 -14.36078 -14.29136 -14.13268 -13.58369 -13.42105 -13.23002 -12.95261 -12.86949 -12.50022 -12.38163 -12.13751 -11.99984 -11.74952 -11.52470 -11.27359 -11.09634 -10.98998 -10.83850 -10.66702 -10.53028 -10.39698 -10.00175 -9.86509 -9.60626 -9.36688 -9.01902 -8.85620 -8.45250 -7.68035 -6.01697 -4.00197 3.33572 3.44822 3.49881 3.94243 4.34787 4.37911 4.48510 4.62013 4.77463 5.06248 5.13182 5.16985 5.30663 5.39872 5.42588 5.47309 5.52516 5.57432 5.58249 5.66337 5.70845 5.75423 5.78647 5.84964 5.91078 5.93643 5.99737 6.05493 6.16452 6.20532 6.25151 6.36074 6.39636 6.55235 6.69203 6.88679 6.92041 7.11982 7.28655 7.50877 7.71284 7.74535 7.95076 8.58133 9.01434 9.61806 11.11636 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.004659 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.286593 B = 6008.826284 C = 6359.836094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C -0.134 4.134 4 C 0.050 3.950 5 O -0.349 6.349 6 C 0.084 3.916 7 H 0.070 0.930 8 C 0.059 3.941 9 N -0.534 5.534 10 C 0.066 3.934 11 C -0.119 4.119 12 C -0.122 4.122 13 C 0.020 3.980 14 H 0.036 0.964 15 C -0.512 4.512 16 H 0.071 0.929 17 C 0.070 3.930 18 N -0.904 5.904 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.262 1.262 23 C 0.077 3.923 24 C -0.144 4.144 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.025 0.975 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.024 0.976 44 H 0.075 0.925 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 18.279 -1.173 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.101 4.101 3 C -0.191 4.191 4 C -0.027 4.027 5 O -0.267 6.267 6 C 0.026 3.974 7 H 0.088 0.912 8 C -0.069 4.069 9 N -0.258 5.258 10 C -0.062 4.062 11 C -0.157 4.157 12 C -0.159 4.159 13 C 0.001 3.999 14 H 0.054 0.946 15 C -0.551 4.551 16 H 0.089 0.911 17 C -0.131 4.131 18 N -0.543 5.543 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.227 1.227 22 H -0.187 1.187 23 C -0.050 4.050 24 C -0.182 4.182 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.450 18.075 -1.807 20.957 hybrid contribution 0.645 0.072 0.442 0.785 sum -9.804 18.148 -1.365 20.672 Atomic orbital electron populations 1.21755 0.93688 1.02022 1.01891 1.22109 0.95874 0.96324 0.95746 1.21748 1.01697 0.94220 1.01443 1.23659 0.85473 0.97003 0.96536 1.89095 1.27240 1.85923 1.24431 1.22735 0.93767 0.98525 0.82364 0.91183 1.22223 0.91153 0.98005 0.95525 1.61893 1.01040 1.02939 1.59949 1.21965 0.89749 0.97248 0.97222 1.21650 0.96170 0.97030 1.00867 1.22012 1.00320 0.93320 1.00258 1.19153 0.89676 0.94016 0.97089 0.94576 1.21017 1.17633 0.91858 1.24565 0.91060 1.24977 0.97297 0.94760 0.96063 1.69907 1.37761 1.02708 1.43886 0.86828 0.81973 0.77260 0.82128 1.20765 1.22677 1.18717 1.22124 1.00576 0.86097 0.96216 1.23115 0.97854 0.99145 0.98062 0.92410 0.92442 0.92334 0.91848 0.92640 0.92674 0.92458 0.89494 0.94059 0.91088 0.92001 0.95704 0.91751 0.92917 0.92681 0.93614 0.92763 0.91626 0.95807 0.90627 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.55 37.15 0.32 -0.74 16 2 C -0.10 -0.96 0.99 -152.51 -0.15 -1.11 16 3 C -0.13 -1.19 8.54 37.15 0.32 -0.87 16 4 C 0.05 0.58 6.63 38.21 0.25 0.84 16 5 O -0.35 -5.45 11.15 -35.23 -0.39 -5.84 16 6 C 0.08 1.20 3.49 -26.16 -0.09 1.10 16 7 H 0.07 1.10 6.76 -51.93 -0.35 0.75 16 8 C 0.06 0.88 4.46 -3.83 -0.02 0.86 16 9 N -0.53 -9.77 4.54 -234.68 -1.07 -10.84 16 10 C 0.07 1.12 5.43 -3.84 -0.02 1.10 16 11 C -0.12 -2.21 6.09 -26.65 -0.16 -2.38 16 12 C -0.12 -2.72 4.74 -26.61 -0.13 -2.85 16 13 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 14 H 0.04 0.94 7.20 -51.93 -0.37 0.57 16 15 C -0.51 -14.66 9.15 -34.43 -0.31 -14.98 16 16 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 18 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 19 Si 0.89 22.70 24.35 -169.99 -4.14 18.56 16 20 H -0.28 -6.97 6.89 56.52 0.39 -6.58 16 21 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 22 H -0.26 -6.54 6.53 56.52 0.37 -6.17 16 23 C 0.08 1.61 4.51 -3.84 -0.02 1.60 16 24 C -0.14 -1.52 5.80 -25.20 -0.15 -1.67 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.45 8.09 -51.92 -0.42 0.03 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 32 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 33 H 0.04 0.58 8.00 -51.93 -0.42 0.17 16 34 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 35 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 1.08 3.35 -51.93 -0.17 0.91 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.07 1.39 6.68 -51.92 -0.35 1.04 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.74 7.86 -51.93 -0.41 0.34 16 45 H 0.08 0.75 7.43 -51.93 -0.39 0.36 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -31.29 335.07 -8.55 -39.84 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.35 Total: -2.61 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -0.43 Total: -16.80 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.29 Total: -38.20 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.39 Total: -5.84 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.14 Total: 18.56 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.29 -8.55 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602882330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.212 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds