Wall clock time and date at job start Mon Mar 30 2020 07:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 110.80259 * 2 1 4 4 C 1.54996 * 110.90666 * 236.33172 * 2 1 3 5 5 O 1.44580 * 103.58284 * 204.85771 * 4 2 1 6 6 C 1.43745 * 106.87084 * 39.88040 * 5 4 2 7 7 H 1.08999 * 109.87745 * 93.16826 * 6 5 4 8 8 C 1.53000 * 109.87837 * 214.16641 * 6 5 4 9 9 N 1.46895 * 109.47682 * 295.22147 * 8 6 5 10 10 C 1.46840 * 111.00329 * 160.00250 * 9 8 6 11 11 C 1.53041 * 109.52612 * 185.84013 * 10 9 8 12 12 C 1.53123 * 109.30796 * 300.84317 * 11 10 9 13 13 C 1.53117 * 109.15638 * 57.59414 * 12 11 10 14 14 H 1.09005 * 109.50101 * 62.36601 * 13 12 11 15 15 C 1.50708 * 109.50303 * 182.43942 * 13 12 11 16 16 H 1.07994 * 119.99597 * 119.64317 * 15 13 12 17 17 C 1.37881 * 119.99908 * 299.92718 * 15 13 12 18 18 N 1.31514 * 119.99617 * 179.97438 * 17 15 13 19 19 Si 1.86802 * 119.99980 * 359.97438 * 17 15 13 20 20 H 1.48500 * 109.46844 * 90.00388 * 19 17 15 21 21 H 1.48498 * 109.46839 * 210.00277 * 19 17 15 22 22 H 1.48502 * 109.47191 * 330.00497 * 19 17 15 23 23 C 1.46842 * 111.00112 * 284.21752 * 9 8 6 24 24 C 1.54096 * 107.41915 * 333.67072 * 6 5 4 25 25 H 1.09005 * 109.47442 * 296.37174 * 1 2 3 26 26 H 1.09002 * 109.47577 * 56.37647 * 1 2 3 27 27 H 1.09011 * 109.47208 * 176.36949 * 1 2 3 28 28 H 1.09005 * 109.46913 * 183.62566 * 3 2 1 29 29 H 1.08995 * 109.47246 * 303.62546 * 3 2 1 30 30 H 1.09000 * 109.47512 * 63.63256 * 3 2 1 31 31 H 1.08999 * 110.62004 * 323.27620 * 4 2 1 32 32 H 1.08994 * 110.61837 * 86.28112 * 4 2 1 33 33 H 1.08997 * 109.47199 * 175.21810 * 8 6 5 34 34 H 1.09005 * 109.46438 * 55.22389 * 8 6 5 35 35 H 1.08999 * 109.46820 * 305.86140 * 10 9 8 36 36 H 1.09001 * 109.46087 * 65.82186 * 10 9 8 37 37 H 1.08997 * 109.49999 * 60.76733 * 11 10 9 38 38 H 1.09005 * 109.50222 * 180.88369 * 11 10 9 39 39 H 1.08991 * 109.49296 * 297.70797 * 12 11 10 40 40 H 1.09001 * 109.55336 * 177.51560 * 12 11 10 41 41 H 0.97004 * 119.99432 * 179.97438 * 18 17 15 42 42 H 1.09009 * 109.46290 * 54.14251 * 23 9 8 43 43 H 1.09000 * 109.45209 * 294.16752 * 23 9 8 44 44 H 1.09000 * 110.48692 * 120.63129 * 24 6 5 45 45 H 1.09005 * 110.48509 * 243.14345 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0733 1.4302 0.0000 4 6 2.0830 -0.8027 -1.2050 5 8 3.3954 -1.2180 -0.7628 6 6 3.2717 -1.5880 0.6207 7 1 3.0836 -2.6585 0.7026 8 6 4.5542 -1.2264 1.3726 9 7 5.6692 -2.0298 0.8538 10 6 6.9603 -1.4128 1.1832 11 6 8.0884 -2.1944 0.5058 12 6 8.0580 -3.6474 0.9879 13 6 6.6858 -4.2514 0.6771 14 1 6.5266 -4.2573 -0.4013 15 6 6.6266 -5.6628 1.2020 16 1 5.8896 -5.9325 1.9439 17 6 7.5173 -6.6083 0.7395 18 7 7.4660 -7.8398 1.1980 19 14 8.7968 -6.1398 -0.5384 20 1 10.0302 -5.6729 0.1442 21 1 9.1135 -7.3227 -1.3784 22 1 8.2638 -5.0515 -1.3967 23 6 5.5985 -3.4102 1.3495 24 6 2.0824 -0.8009 1.2042 25 1 -0.3634 0.4565 0.9207 26 1 -0.3634 0.5690 -0.8557 27 1 -0.3634 -1.0257 -0.0651 28 1 3.1611 1.4056 -0.0650 29 1 1.6704 1.9720 -0.8557 30 1 1.7757 1.9320 0.9207 31 1 1.4562 -1.6710 -1.4081 32 1 2.1582 -0.1673 -2.0874 33 1 4.4224 -1.4310 2.4351 34 1 4.7722 -0.1678 1.2308 35 1 6.9706 -0.3814 0.8307 36 1 7.1053 -1.4286 2.2634 37 1 7.9516 -2.1672 -0.5752 38 1 9.0477 -1.7455 0.7633 39 1 8.2342 -3.6776 2.0631 40 1 8.8320 -4.2183 0.4748 41 1 8.0924 -8.5051 0.8723 42 1 4.6194 -3.8297 1.1176 43 1 5.7500 -3.4165 2.4289 44 1 1.3245 -1.4838 1.5882 45 1 2.4205 -0.1263 1.9908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602882330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:37 Heat of formation + Delta-G solvation = -76.938196 kcal Electronic energy + Delta-G solvation = -21669.539406 eV Core-core repulsion = 18685.332530 eV Total energy + Delta-G solvation = -2984.206876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99116 -39.68923 -35.85315 -35.20480 -34.06925 -32.09850 -31.27399 -28.20476 -27.42649 -26.94312 -26.42947 -24.10529 -22.86997 -21.77699 -20.58021 -20.21058 -18.83356 -17.50494 -16.74684 -16.55491 -16.36138 -15.90975 -15.66862 -15.19415 -15.13255 -14.83385 -14.58959 -14.33425 -14.08747 -13.76257 -13.68988 -13.39585 -13.01524 -12.94791 -12.76282 -12.72669 -12.43200 -12.23194 -12.10288 -11.93683 -11.77126 -11.61531 -11.51342 -11.50754 -11.29672 -10.99333 -10.81211 -10.62737 -10.40825 -9.10442 -8.31586 -6.34620 1.28238 1.35376 1.46948 2.32180 2.89337 3.04366 3.16652 3.53661 3.78405 3.92018 3.99368 4.02764 4.15492 4.21176 4.29817 4.37693 4.44188 4.46344 4.59711 4.66116 4.68982 4.72639 4.75899 4.82087 4.83968 4.88049 4.91634 4.96518 5.00539 5.05330 5.08755 5.14502 5.16857 5.24616 5.28165 5.34746 5.44527 5.47881 5.62959 5.72698 6.06988 6.19647 6.34664 6.37605 6.72265 7.31134 8.85326 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029334 B = 0.004659 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.286593 B = 6008.826284 C = 6359.836094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 C -0.131 4.131 4 C 0.042 3.958 5 O -0.380 6.380 6 C 0.081 3.919 7 H 0.042 0.958 8 C 0.061 3.939 9 N -0.546 5.546 10 C 0.065 3.935 11 C -0.114 4.114 12 C -0.121 4.121 13 C 0.020 3.980 14 H 0.018 0.982 15 C -0.519 4.519 16 H 0.033 0.967 17 C 0.015 3.985 18 N -0.950 5.950 19 Si 0.951 3.049 20 H -0.264 1.264 21 H -0.298 1.298 22 H -0.253 1.253 23 C 0.091 3.909 24 C -0.137 4.137 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.032 0.968 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.052 0.948 43 H 0.018 0.982 44 H 0.081 0.919 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 21.523 -1.570 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C -0.188 4.188 4 C -0.035 4.035 5 O -0.299 6.299 6 C 0.023 3.977 7 H 0.060 0.940 8 C -0.067 4.067 9 N -0.271 5.271 10 C -0.062 4.062 11 C -0.152 4.152 12 C -0.158 4.158 13 C 0.001 3.999 14 H 0.036 0.964 15 C -0.557 4.557 16 H 0.051 0.949 17 C -0.182 4.182 18 N -0.590 5.590 19 Si 0.778 3.222 20 H -0.190 1.190 21 H -0.226 1.226 22 H -0.178 1.178 23 C -0.037 4.037 24 C -0.175 4.175 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.100 0.900 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.407 21.349 -2.198 23.852 hybrid contribution 0.532 -0.970 0.587 1.253 sum -9.875 20.378 -1.610 22.702 Atomic orbital electron populations 1.21739 0.92082 1.02231 1.03003 1.22088 0.97045 0.96304 0.93858 1.21735 1.00699 0.93720 1.02689 1.23871 0.84168 0.97496 0.97917 1.89045 1.29527 1.86163 1.25166 1.22719 0.94999 0.97558 0.82411 0.94019 1.22317 0.90096 0.98301 0.95955 1.61844 1.02974 1.01808 1.60444 1.22057 0.88288 0.98240 0.97662 1.21628 0.98639 0.94443 1.00486 1.21903 0.97939 0.95975 1.00015 1.19054 0.92614 0.92419 0.95821 0.96412 1.21329 1.16395 0.94508 1.23510 0.94879 1.25810 0.99598 0.94533 0.98250 1.70045 1.39188 1.03992 1.45784 0.85806 0.79733 0.77110 0.79567 1.18995 1.22570 1.17766 1.21780 0.98622 0.87915 0.95379 1.23092 0.96535 0.99206 0.98711 0.91287 0.91344 0.92646 0.93318 0.91560 0.91324 0.92721 0.88431 0.93164 0.89135 0.89000 0.94945 0.92355 0.89719 0.93073 0.94776 0.92533 0.92912 0.96412 0.90036 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.55 71.98 0.62 -1.10 16 2 C -0.09 -1.57 0.99 -50.88 -0.05 -1.62 16 3 C -0.13 -1.94 8.54 71.98 0.61 -1.33 16 4 C 0.04 0.93 6.63 72.67 0.48 1.41 16 5 O -0.38 -11.65 11.15 -148.98 -1.66 -13.31 16 6 C 0.08 2.26 3.49 30.96 0.11 2.37 16 7 H 0.04 1.37 6.76 -2.39 -0.02 1.35 16 8 C 0.06 1.70 4.46 86.30 0.39 2.09 16 9 N -0.55 -19.30 4.54 -896.40 -4.07 -23.36 16 10 C 0.06 2.01 5.43 86.33 0.47 2.47 16 11 C -0.11 -3.91 6.09 30.65 0.19 -3.73 16 12 C -0.12 -5.27 4.74 30.67 0.15 -5.13 16 13 C 0.02 1.00 1.85 -11.49 -0.02 0.98 16 14 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 15 C -0.52 -30.85 9.15 25.60 0.23 -30.62 16 16 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 17 C 0.02 0.91 5.45 84.66 0.46 1.37 16 18 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 19 Si 0.95 47.29 24.35 68.60 1.67 48.96 16 20 H -0.26 -12.36 6.89 99.48 0.69 -11.68 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.25 -12.12 6.53 99.48 0.65 -11.47 16 23 C 0.09 3.87 4.51 86.32 0.39 4.26 16 24 C -0.14 -2.66 5.80 31.58 0.18 -2.48 16 25 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.75 8.09 -2.38 -0.02 0.73 16 28 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.20 8.01 -2.39 -0.02 1.18 16 32 H 0.10 1.89 8.05 -2.39 -0.02 1.87 16 33 H 0.05 1.32 8.00 -2.39 -0.02 1.30 16 34 H 0.09 2.19 7.79 -2.38 -0.02 2.18 16 35 H 0.09 2.34 7.93 -2.39 -0.02 2.32 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.03 1.56 3.35 -2.39 -0.01 1.55 16 41 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 42 H 0.05 2.34 6.68 -2.38 -0.02 2.32 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 1.48 7.86 -2.39 -0.02 1.46 16 45 H 0.09 1.51 7.43 -2.38 -0.02 1.49 16 Total: -1.00 -69.55 335.07 1.29 -68.27 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.85 Total: 11.18 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 4.20 Total: -31.05 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -3.77 Total: -84.04 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.66 Total: -13.31 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.67 Total: 48.96 kcal Total: -69.55 1.29 -68.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602882330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.672 kcal (2) G-P(sol) polarization free energy of solvation -69.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds