Wall clock time and date at job start Mon Mar 30 2020 07:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.45793 * 2 1 4 4 C 1.54481 * 110.51228 * 237.24327 * 2 1 3 5 5 O 1.44523 * 104.87793 * 265.25954 * 4 2 1 6 6 C 1.44427 * 105.22598 * 319.64478 * 5 4 2 7 7 H 1.08996 * 110.36844 * 281.47756 * 6 5 4 8 8 C 1.52993 * 110.37108 * 159.24769 * 6 5 4 9 9 N 1.46907 * 109.47159 * 67.95212 * 8 6 5 10 10 C 1.46842 * 110.99676 * 293.95275 * 9 8 6 11 11 C 1.53036 * 109.52190 * 185.84074 * 10 9 8 12 12 C 1.53123 * 109.27788 * 300.81892 * 11 10 9 13 13 C 1.53123 * 109.16001 * 57.65365 * 12 11 10 14 14 H 1.08997 * 109.49749 * 62.28489 * 13 12 11 15 15 C 1.50697 * 109.50101 * 182.40587 * 13 12 11 16 16 H 1.07998 * 119.99675 * 119.80966 * 15 13 12 17 17 C 1.37883 * 120.00267 * 299.80295 * 15 13 12 18 18 N 1.31512 * 119.99590 * 0.02562 * 17 15 13 19 19 Si 1.86793 * 120.00229 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47229 * 59.99401 * 19 17 15 21 21 H 1.48498 * 109.47177 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46793 * 299.99753 * 19 17 15 23 23 C 1.46848 * 110.99958 * 58.16337 * 9 8 6 24 24 C 1.54475 * 104.90170 * 40.36068 * 6 5 4 25 25 H 1.09004 * 109.47375 * 297.39971 * 1 2 3 26 26 H 1.09002 * 109.46983 * 57.39600 * 1 2 3 27 27 H 1.08999 * 109.47209 * 177.39495 * 1 2 3 28 28 H 1.08990 * 109.47207 * 182.60502 * 3 2 1 29 29 H 1.09004 * 109.46914 * 302.60155 * 3 2 1 30 30 H 1.09000 * 109.46919 * 62.59921 * 3 2 1 31 31 H 1.08995 * 110.36811 * 24.16679 * 4 2 1 32 32 H 1.09001 * 110.36983 * 146.39581 * 4 2 1 33 33 H 1.08999 * 109.47425 * 307.95041 * 8 6 5 34 34 H 1.09004 * 109.47063 * 187.94598 * 8 6 5 35 35 H 1.09002 * 109.46766 * 65.82407 * 10 9 8 36 36 H 1.09000 * 109.46420 * 305.85141 * 10 9 8 37 37 H 1.09000 * 109.50632 * 60.76184 * 11 10 9 38 38 H 1.09006 * 109.50216 * 180.87978 * 11 10 9 39 39 H 1.09000 * 109.52561 * 177.56017 * 12 11 10 40 40 H 1.09007 * 109.52268 * 297.75177 * 12 11 10 41 41 H 0.97005 * 119.99751 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.46014 * 294.17985 * 23 9 8 43 43 H 1.08991 * 109.46260 * 54.15359 * 23 9 8 44 44 H 1.09006 * 110.51128 * 94.72198 * 24 6 5 45 45 H 1.08997 * 110.51349 * 217.29461 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0713 -0.7829 -1.2168 5 8 2.3094 -2.1197 -0.7219 6 6 2.8757 -1.9414 0.5948 7 1 3.9303 -1.6763 0.5214 8 6 2.7040 -3.2149 1.4252 9 7 3.5408 -4.2831 0.8623 10 6 3.0705 -4.6711 -0.4736 11 6 3.8705 -5.8790 -0.9665 12 6 5.3572 -5.5156 -1.0139 13 6 5.8100 -5.0688 0.3789 14 1 5.6922 -5.8935 1.0817 15 6 7.2576 -4.6529 0.3279 16 1 7.5393 -3.6445 0.5928 17 6 8.2223 -5.5598 -0.0568 18 7 7.8791 -6.7875 -0.3798 19 14 10.0167 -5.0445 -0.1193 20 1 10.4534 -4.6071 1.2309 21 1 10.8469 -6.1944 -0.5593 22 1 10.1762 -3.9222 -1.0788 23 6 4.9538 -3.8844 0.8328 24 6 2.0713 -0.7797 1.2192 25 1 -0.3634 0.4729 0.9124 26 1 -0.3633 0.5537 -0.8657 27 1 -0.3633 -1.0266 -0.0467 28 1 3.1535 1.4151 -0.0467 29 1 1.6729 1.9675 -0.8658 30 1 1.7486 1.9392 0.9124 31 1 1.3311 -0.8001 -2.0166 32 1 3.0013 -0.3382 -1.5708 33 1 1.6588 -3.5235 1.4053 34 1 3.0062 -3.0209 2.4544 35 1 3.2083 -3.8383 -1.1633 36 1 2.0131 -4.9311 -0.4251 37 1 3.7222 -6.7165 -0.2848 38 1 3.5318 -6.1571 -1.9646 39 1 5.9354 -6.3863 -1.3231 40 1 5.5112 -4.7037 -1.7249 41 1 8.5579 -7.4257 -0.6501 42 1 5.0827 -3.0552 0.1370 43 1 5.2642 -3.5731 1.8301 44 1 1.2489 -1.1652 1.8219 45 1 2.7214 -0.1461 1.8225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602882331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:40 Heat of formation + Delta-G solvation = -62.205739 kcal Electronic energy + Delta-G solvation = -21895.620178 eV Core-core repulsion = 18912.052150 eV Total energy + Delta-G solvation = -2983.568028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10735 -37.86931 -34.67052 -33.67871 -32.02944 -29.77886 -29.71577 -27.56258 -26.15636 -25.35400 -24.82992 -22.49282 -21.23690 -20.70284 -19.41412 -18.32593 -16.53058 -15.96591 -15.58153 -15.30791 -14.73687 -14.25789 -14.21846 -13.99520 -13.77039 -13.21537 -13.08774 -12.87660 -12.45727 -12.36820 -12.19318 -11.91596 -11.69251 -11.50763 -11.45763 -11.15237 -10.89182 -10.83864 -10.74050 -10.66311 -10.57601 -10.48014 -10.00771 -9.74919 -9.41925 -9.34239 -8.92715 -8.62029 -8.23109 -7.45369 -5.91104 -3.97177 3.35393 3.40086 3.42275 3.94212 4.36037 4.47010 4.57434 4.74722 4.77622 5.02830 5.17207 5.21110 5.38638 5.39082 5.44292 5.49714 5.53549 5.63585 5.71918 5.74521 5.80007 5.87407 5.95364 5.98203 6.00754 6.12397 6.13491 6.20858 6.36095 6.50599 6.54635 6.70447 6.86684 6.93356 7.00511 7.08906 7.34543 7.51527 7.80957 7.83164 7.95564 8.17508 8.26242 8.55955 9.06764 9.66482 11.14809 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026760 B = 0.004788 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.100258 B = 5846.536715 C = 6356.512084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C -0.138 4.138 4 C 0.048 3.952 5 O -0.357 6.357 6 C 0.037 3.963 7 H 0.073 0.927 8 C 0.063 3.937 9 N -0.535 5.535 10 C 0.062 3.938 11 C -0.119 4.119 12 C -0.108 4.108 13 C 0.055 3.945 14 H 0.033 0.967 15 C -0.514 4.514 16 H 0.051 0.949 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.065 3.935 24 C -0.139 4.139 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.028 0.972 41 H 0.259 0.741 42 H 0.022 0.978 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 12.733 0.734 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.195 4.195 4 C -0.029 4.029 5 O -0.276 6.276 6 C -0.023 4.023 7 H 0.091 0.909 8 C -0.066 4.066 9 N -0.257 5.257 10 C -0.065 4.065 11 C -0.157 4.157 12 C -0.147 4.147 13 C 0.036 3.964 14 H 0.051 0.949 15 C -0.553 4.553 16 H 0.070 0.930 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.062 4.062 24 C -0.177 4.177 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.786 11.913 0.872 18.241 hybrid contribution 1.133 1.287 -0.519 1.791 sum -12.653 13.201 0.353 18.289 Atomic orbital electron populations 1.21820 0.93645 1.02144 1.01513 1.21926 0.96461 0.95847 0.95767 1.21838 1.01031 0.94797 1.01826 1.23534 0.99609 0.83898 0.95871 1.89298 1.82989 1.24546 1.30738 1.23925 0.97488 0.96976 0.83881 0.90925 1.22347 0.98791 0.88084 0.97392 1.62177 1.03692 1.36115 1.23764 1.22131 0.97283 0.97905 0.89209 1.21704 0.98236 0.97143 0.98600 1.21622 0.91882 1.01768 0.99380 1.18649 0.92111 0.92433 0.93175 0.94924 1.21116 0.91644 0.97251 1.45263 0.93041 1.24928 0.98609 0.94932 0.95338 1.69893 1.33177 1.03820 1.45805 0.86711 0.85266 0.77941 0.78351 1.20354 1.21332 1.20440 1.22316 0.85775 0.98986 0.99079 1.23085 1.00229 0.96981 0.97433 0.92621 0.92714 0.92099 0.92354 0.92529 0.92392 0.89614 0.92580 0.90905 0.90021 0.93146 0.93019 0.92534 0.93799 0.89366 0.95283 0.93069 0.96031 0.92675 0.90600 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.28 37.16 0.31 -0.88 16 2 C -0.10 -1.00 1.06 -152.94 -0.16 -1.17 16 3 C -0.14 -1.19 8.32 37.16 0.31 -0.88 16 4 C 0.05 0.58 6.74 37.93 0.26 0.83 16 5 O -0.36 -5.50 8.31 -35.23 -0.29 -5.79 16 6 C 0.04 0.53 2.88 -25.96 -0.07 0.45 16 7 H 0.07 1.18 6.26 -51.93 -0.33 0.85 16 8 C 0.06 0.97 5.12 -3.82 -0.02 0.95 16 9 N -0.54 -10.36 4.86 -234.68 -1.14 -11.50 16 10 C 0.06 1.20 4.64 -3.84 -0.02 1.18 16 11 C -0.12 -2.50 6.09 -26.65 -0.16 -2.66 16 12 C -0.11 -2.69 5.03 -26.60 -0.13 -2.82 16 13 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 14 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.51 -14.36 8.56 -34.44 -0.29 -14.66 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -25.83 11.36 55.43 0.63 -25.20 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.07 1.43 4.08 -3.84 -0.02 1.41 16 24 C -0.14 -1.54 5.92 -25.16 -0.15 -1.69 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 32 H 0.06 0.68 7.83 -51.93 -0.41 0.28 16 33 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.02 5.70 -51.93 -0.30 0.72 16 36 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.02 0.48 6.49 -51.93 -0.34 0.14 16 43 H 0.05 1.18 8.12 -51.93 -0.42 0.76 16 44 H 0.08 0.79 7.46 -51.93 -0.39 0.40 16 45 H 0.07 0.77 7.74 -51.93 -0.40 0.36 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -29.14 335.00 -9.57 -38.71 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.33 Total: -0.77 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -0.46 Total: -17.02 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.51 Total: -36.70 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.29 Total: -5.79 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.14 -9.57 -38.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602882331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.498 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds