Wall clock time and date at job start Mon Mar 30 2020 07:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.45793 * 2 1 4 4 C 1.54481 * 110.51228 * 237.24327 * 2 1 3 5 5 O 1.44523 * 104.87793 * 265.25954 * 4 2 1 6 6 C 1.44427 * 105.22598 * 319.64478 * 5 4 2 7 7 H 1.08996 * 110.36844 * 281.47756 * 6 5 4 8 8 C 1.52993 * 110.37108 * 159.24769 * 6 5 4 9 9 N 1.46907 * 109.47159 * 67.95212 * 8 6 5 10 10 C 1.46842 * 110.99676 * 293.95275 * 9 8 6 11 11 C 1.53036 * 109.52190 * 185.84074 * 10 9 8 12 12 C 1.53123 * 109.27788 * 300.81892 * 11 10 9 13 13 C 1.53123 * 109.16001 * 57.65365 * 12 11 10 14 14 H 1.08997 * 109.49749 * 62.28489 * 13 12 11 15 15 C 1.50697 * 109.50101 * 182.40587 * 13 12 11 16 16 H 1.07998 * 119.99675 * 119.80966 * 15 13 12 17 17 C 1.37883 * 120.00267 * 299.80295 * 15 13 12 18 18 N 1.31512 * 119.99590 * 0.02562 * 17 15 13 19 19 Si 1.86793 * 120.00229 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47229 * 59.99401 * 19 17 15 21 21 H 1.48498 * 109.47177 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46793 * 299.99753 * 19 17 15 23 23 C 1.46848 * 110.99958 * 58.16337 * 9 8 6 24 24 C 1.54475 * 104.90170 * 40.36068 * 6 5 4 25 25 H 1.09004 * 109.47375 * 297.39971 * 1 2 3 26 26 H 1.09002 * 109.46983 * 57.39600 * 1 2 3 27 27 H 1.08999 * 109.47209 * 177.39495 * 1 2 3 28 28 H 1.08990 * 109.47207 * 182.60502 * 3 2 1 29 29 H 1.09004 * 109.46914 * 302.60155 * 3 2 1 30 30 H 1.09000 * 109.46919 * 62.59921 * 3 2 1 31 31 H 1.08995 * 110.36811 * 24.16679 * 4 2 1 32 32 H 1.09001 * 110.36983 * 146.39581 * 4 2 1 33 33 H 1.08999 * 109.47425 * 307.95041 * 8 6 5 34 34 H 1.09004 * 109.47063 * 187.94598 * 8 6 5 35 35 H 1.09002 * 109.46766 * 65.82407 * 10 9 8 36 36 H 1.09000 * 109.46420 * 305.85141 * 10 9 8 37 37 H 1.09000 * 109.50632 * 60.76184 * 11 10 9 38 38 H 1.09006 * 109.50216 * 180.87978 * 11 10 9 39 39 H 1.09000 * 109.52561 * 177.56017 * 12 11 10 40 40 H 1.09007 * 109.52268 * 297.75177 * 12 11 10 41 41 H 0.97005 * 119.99751 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.46014 * 294.17985 * 23 9 8 43 43 H 1.08991 * 109.46260 * 54.15359 * 23 9 8 44 44 H 1.09006 * 110.51128 * 94.72198 * 24 6 5 45 45 H 1.08997 * 110.51349 * 217.29461 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0713 -0.7829 -1.2168 5 8 2.3094 -2.1197 -0.7219 6 6 2.8757 -1.9414 0.5948 7 1 3.9303 -1.6763 0.5214 8 6 2.7040 -3.2149 1.4252 9 7 3.5408 -4.2831 0.8623 10 6 3.0705 -4.6711 -0.4736 11 6 3.8705 -5.8790 -0.9665 12 6 5.3572 -5.5156 -1.0139 13 6 5.8100 -5.0688 0.3789 14 1 5.6922 -5.8935 1.0817 15 6 7.2576 -4.6529 0.3279 16 1 7.5393 -3.6445 0.5928 17 6 8.2223 -5.5598 -0.0568 18 7 7.8791 -6.7875 -0.3798 19 14 10.0167 -5.0445 -0.1193 20 1 10.4534 -4.6071 1.2309 21 1 10.8469 -6.1944 -0.5593 22 1 10.1762 -3.9222 -1.0788 23 6 4.9538 -3.8844 0.8328 24 6 2.0713 -0.7797 1.2192 25 1 -0.3634 0.4729 0.9124 26 1 -0.3633 0.5537 -0.8657 27 1 -0.3633 -1.0266 -0.0467 28 1 3.1535 1.4151 -0.0467 29 1 1.6729 1.9675 -0.8658 30 1 1.7486 1.9392 0.9124 31 1 1.3311 -0.8001 -2.0166 32 1 3.0013 -0.3382 -1.5708 33 1 1.6588 -3.5235 1.4053 34 1 3.0062 -3.0209 2.4544 35 1 3.2083 -3.8383 -1.1633 36 1 2.0131 -4.9311 -0.4251 37 1 3.7222 -6.7165 -0.2848 38 1 3.5318 -6.1571 -1.9646 39 1 5.9354 -6.3863 -1.3231 40 1 5.5112 -4.7037 -1.7249 41 1 8.5579 -7.4257 -0.6501 42 1 5.0827 -3.0552 0.1370 43 1 5.2642 -3.5731 1.8301 44 1 1.2489 -1.1652 1.8219 45 1 2.7214 -0.1461 1.8225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602882331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:40 Heat of formation + Delta-G solvation = -79.395376 kcal Electronic energy + Delta-G solvation = -21896.365577 eV Core-core repulsion = 18912.052150 eV Total energy + Delta-G solvation = -2984.313427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19752 -39.42219 -35.94142 -35.18657 -33.79892 -31.65208 -31.02616 -28.22515 -27.19799 -26.82572 -26.58847 -23.95969 -23.03873 -22.10506 -20.29983 -20.05623 -18.46396 -17.32710 -16.70182 -16.56860 -16.42241 -15.79495 -15.63562 -15.11990 -14.86062 -14.65058 -14.33195 -14.16108 -14.02631 -13.80421 -13.57517 -13.20402 -12.86113 -12.84053 -12.76335 -12.53739 -12.42912 -12.37351 -12.29417 -11.83675 -11.72119 -11.63408 -11.54378 -11.47944 -11.34180 -10.83295 -10.65545 -10.55476 -10.35870 -9.00207 -8.06778 -6.21290 1.41225 1.42969 1.50580 2.43325 2.88687 3.19832 3.30534 3.52443 3.74265 3.89689 4.02767 4.16237 4.28067 4.31788 4.36272 4.41493 4.45738 4.63269 4.65850 4.68909 4.77573 4.79939 4.82665 4.83397 4.87020 4.97786 5.03636 5.05585 5.09574 5.13048 5.19637 5.21344 5.26716 5.30253 5.41409 5.43982 5.53653 5.64067 5.93273 5.99447 6.13917 6.22997 6.40595 6.48171 6.91205 7.46296 8.97918 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026760 B = 0.004788 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.100258 B = 5846.536715 C = 6356.512084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 C -0.135 4.135 4 C 0.040 3.960 5 O -0.381 6.381 6 C 0.038 3.962 7 H 0.048 0.952 8 C 0.063 3.937 9 N -0.546 5.546 10 C 0.072 3.928 11 C -0.113 4.113 12 C -0.100 4.100 13 C 0.052 3.948 14 H -0.004 1.004 15 C -0.537 4.537 16 H 0.051 0.949 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.955 3.045 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.084 3.916 24 C -0.132 4.132 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.017 0.983 41 H 0.260 0.740 42 H 0.015 0.985 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.033 14.554 1.103 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 C -0.193 4.193 4 C -0.036 4.036 5 O -0.301 6.301 6 C -0.021 4.021 7 H 0.066 0.934 8 C -0.065 4.065 9 N -0.269 5.269 10 C -0.056 4.056 11 C -0.151 4.151 12 C -0.138 4.138 13 C 0.033 3.967 14 H 0.014 0.986 15 C -0.575 4.575 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.044 4.044 24 C -0.170 4.170 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.044 13.752 1.247 20.420 hybrid contribution 1.494 0.704 -0.650 1.775 sum -13.550 14.456 0.597 19.822 Atomic orbital electron populations 1.21795 0.92365 1.01893 1.02711 1.21912 0.97388 0.96145 0.94004 1.21825 1.00456 0.93989 1.02992 1.23722 0.99805 0.82904 0.97171 1.89245 1.82997 1.26571 1.31249 1.23780 0.96759 0.97587 0.83989 0.93365 1.22445 0.98661 0.87477 0.97917 1.62104 1.02720 1.38170 1.23880 1.22028 0.97862 0.96609 0.89064 1.21632 0.95844 0.97850 0.99767 1.21424 0.94240 0.99821 0.98345 1.18587 0.92443 0.92742 0.92893 0.98603 1.21482 0.93148 0.97376 1.45514 0.93098 1.25738 1.03008 0.94899 0.94862 1.70042 1.34465 1.04769 1.46256 0.85666 0.79908 0.77713 0.78688 1.19485 1.20866 1.19764 1.21942 0.87083 0.96726 0.98622 1.23060 1.00235 0.95881 0.97875 0.91356 0.91652 0.93044 0.93257 0.91488 0.91140 0.88453 0.93314 0.89388 0.88713 0.93723 0.90872 0.93347 0.91833 0.92505 0.96411 0.93074 0.96706 0.92561 0.89395 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.28 71.98 0.60 -1.31 16 2 C -0.09 -1.67 1.06 -51.16 -0.05 -1.72 16 3 C -0.14 -1.99 8.32 71.98 0.60 -1.39 16 4 C 0.04 0.92 6.74 72.49 0.49 1.41 16 5 O -0.38 -11.30 8.31 -148.98 -1.24 -12.54 16 6 C 0.04 1.05 2.88 31.09 0.09 1.14 16 7 H 0.05 1.56 6.26 -2.39 -0.01 1.55 16 8 C 0.06 1.84 5.12 86.30 0.44 2.28 16 9 N -0.55 -20.85 4.86 -896.38 -4.35 -25.20 16 10 C 0.07 2.71 4.64 86.33 0.40 3.11 16 11 C -0.11 -4.77 6.09 30.65 0.19 -4.59 16 12 C -0.10 -5.12 5.03 30.68 0.15 -4.97 16 13 C 0.05 2.79 2.26 -11.49 -0.03 2.76 16 14 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 15 C -0.54 -30.75 8.56 25.60 0.22 -30.53 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.78 5.30 84.66 0.45 1.23 16 18 N -0.92 -54.74 11.36 21.45 0.24 -54.50 16 19 Si 0.95 44.63 29.54 68.60 2.03 46.65 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.08 3.72 4.08 86.32 0.35 4.07 16 24 C -0.13 -2.62 5.92 31.61 0.19 -2.43 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.81 8.09 -2.39 -0.02 0.80 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 1.94 7.87 -2.39 -0.02 1.92 16 32 H 0.05 1.16 7.83 -2.39 -0.02 1.14 16 33 H 0.09 2.33 8.06 -2.39 -0.02 2.31 16 34 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 35 H 0.04 1.77 5.70 -2.39 -0.01 1.76 16 36 H 0.07 2.47 8.06 -2.39 -0.02 2.45 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 39 H 0.06 3.25 6.16 -2.39 -0.01 3.23 16 40 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 42 H 0.01 0.67 6.49 -2.39 -0.02 0.66 16 43 H 0.06 2.43 8.12 -2.39 -0.02 2.42 16 44 H 0.09 1.55 7.46 -2.38 -0.02 1.53 16 45 H 0.08 1.51 7.74 -2.39 -0.02 1.49 16 Total: -1.00 -63.83 335.00 1.69 -62.15 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.92 Total: 14.39 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 4.08 Total: -30.94 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -4.11 Total: -79.70 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.24 Total: -12.54 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -63.83 1.69 -62.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602882331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.249 kcal (2) G-P(sol) polarization free energy of solvation -63.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds