Wall clock time and date at job start Mon Mar 30 2020 06:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86790 * 120.00021 * 2 1 4 4 H 1.48503 * 109.47497 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47388 * 300.00370 * 3 2 1 6 6 H 1.48507 * 109.47321 * 60.00227 * 3 2 1 7 7 C 1.37877 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99737 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00659 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47561 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47346 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47172 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99800 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46822 * 179.97438 * 14 13 12 16 16 C 1.54195 * 111.96619 * 61.01828 * 15 14 13 17 17 C 1.55107 * 103.85275 * 97.36839 * 16 15 14 18 18 C 1.55395 * 101.92996 * 40.55319 * 17 16 15 19 19 C 1.54444 * 104.20225 * 320.48491 * 18 17 16 20 20 H 1.09003 * 112.00770 * 261.63494 * 19 18 17 21 21 O 1.43811 * 108.48938 * 138.22569 * 19 18 17 22 22 C 1.44293 * 107.24781 * 220.00455 * 21 19 18 23 23 C 1.54591 * 112.01525 * 298.16788 * 15 14 13 24 24 H 0.97000 * 120.00551 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46979 * 59.99795 * 9 7 2 26 26 H 1.09000 * 109.46791 * 300.00440 * 9 7 2 27 27 H 1.09007 * 109.47042 * 59.99876 * 10 9 7 28 28 H 1.09000 * 109.47210 * 299.99917 * 10 9 7 29 29 H 1.08996 * 109.46785 * 59.99846 * 11 10 9 30 30 H 1.09000 * 109.46800 * 300.00048 * 11 10 9 31 31 H 1.09007 * 109.47042 * 59.99756 * 12 11 10 32 32 H 1.09000 * 109.47154 * 300.00583 * 12 11 10 33 33 H 1.00893 * 110.99895 * 303.95627 * 13 12 11 34 34 H 1.09003 * 109.46708 * 60.00666 * 14 13 12 35 35 H 1.08998 * 109.47155 * 300.00055 * 14 13 12 36 36 H 1.09002 * 110.57462 * 216.00246 * 16 15 14 37 37 H 1.09003 * 110.57638 * 338.73187 * 16 15 14 38 38 H 1.08996 * 110.90385 * 158.85243 * 17 16 15 39 39 H 1.09002 * 110.90411 * 282.44968 * 17 16 15 40 40 H 1.08998 * 110.47260 * 201.79781 * 18 17 16 41 41 H 1.09004 * 110.46602 * 79.16729 * 18 17 16 42 42 H 1.09000 * 110.61594 * 281.46975 * 22 21 19 43 43 H 1.08996 * 110.61924 * 158.46317 * 22 21 19 44 44 H 1.08997 * 110.90977 * 17.44386 * 23 15 14 45 45 H 1.08997 * 110.90791 * 141.01219 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9872 -0.0012 12 6 2.4745 -6.1501 -0.0005 13 7 1.7400 -7.4222 -0.0005 14 6 2.6645 -8.5639 -0.0005 15 6 1.8644 -9.8680 0.0001 16 6 0.9717 -9.9976 -1.2505 17 6 1.8063 -10.8833 -2.2123 18 6 2.4028 -11.9390 -1.2405 19 6 2.7646 -11.1288 0.0236 20 1 3.8217 -10.8642 0.0505 21 8 2.3852 -11.8947 1.1802 22 6 1.8250 -10.9730 2.1387 23 6 0.9851 -10.0078 1.2639 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8540 -5.0446 -0.8914 30 1 0.8533 -5.0451 0.8886 31 1 3.1006 -6.0924 0.8899 32 1 3.1019 -6.0922 -0.8900 33 1 1.1033 -7.4721 0.7805 34 1 3.2924 -8.5228 0.8895 35 1 3.2925 -8.5228 -0.8905 36 1 0.0301 -10.4861 -1.0000 37 1 0.7882 -9.0187 -1.6933 38 1 1.1678 -11.3547 -2.9593 39 1 2.5964 -10.3027 -2.6885 40 1 3.2953 -12.3926 -1.6716 41 1 1.6612 -12.7025 -1.0053 42 1 2.6157 -10.4310 2.6575 43 1 1.1881 -11.4989 2.8499 44 1 0.8590 -9.0447 1.7585 45 1 0.0180 -10.4464 1.0183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687468022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:17 Heat of formation + Delta-G solvation = -78.595837 kcal Electronic energy + Delta-G solvation = -20404.121447 eV Core-core repulsion = 17419.842690 eV Total energy + Delta-G solvation = -2984.278756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76822 -36.87302 -35.61915 -34.17117 -32.57601 -31.47878 -28.98013 -27.89098 -27.25978 -25.00736 -23.76692 -22.19421 -21.35219 -20.89734 -20.05261 -19.20184 -16.85497 -16.44862 -16.17245 -15.72787 -15.46385 -14.65303 -14.50636 -14.40598 -14.20523 -13.94840 -13.57684 -13.15710 -12.64233 -12.37634 -12.21860 -12.01722 -11.74730 -11.59157 -11.45749 -11.13477 -11.04360 -10.99417 -10.90072 -10.80359 -10.64069 -10.49733 -10.45550 -10.40894 -9.85965 -9.63344 -9.25618 -8.99018 -8.41335 -8.32731 -5.97853 -3.99999 3.31673 3.39011 3.43268 3.54436 3.91723 4.13992 4.46272 4.49938 4.58964 4.77265 4.85595 4.91361 4.93574 5.04587 5.14807 5.27262 5.35923 5.37897 5.43496 5.45642 5.48298 5.54571 5.58363 5.68169 5.74115 5.78598 5.82668 5.89348 5.95375 6.11725 6.14667 6.18547 6.25354 6.50625 6.68704 6.82030 6.95176 7.01751 7.22180 7.37190 7.71409 7.86978 8.03336 8.46243 9.07778 9.63929 11.13563 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.002656 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.526611 B =10538.526960 C =10701.839193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.687 5.687 14 C 0.078 3.922 15 C -0.089 4.089 16 C -0.107 4.107 17 C -0.125 4.125 18 C -0.124 4.124 19 C 0.080 3.920 20 H 0.076 0.924 21 O -0.376 6.376 22 C 0.046 3.954 23 C -0.147 4.147 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.338 0.662 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -24.586 0.244 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.069 4.069 13 N -0.319 5.319 14 C -0.051 4.051 15 C -0.090 4.090 16 C -0.144 4.144 17 C -0.163 4.163 18 C -0.161 4.161 19 C 0.022 3.978 20 H 0.094 0.906 21 O -0.296 6.296 22 C -0.031 4.031 23 C -0.185 4.185 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.157 0.843 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.372 -24.700 -0.409 24.932 hybrid contribution 0.768 1.266 1.019 1.798 sum 4.140 -23.433 0.610 23.804 Atomic orbital electron populations 1.69977 1.06045 1.26416 1.51128 1.25037 0.94850 0.99253 0.95439 0.86556 0.80116 0.83883 0.77566 1.19772 1.21011 1.21040 1.21330 0.93048 0.91217 1.50185 0.92736 1.19093 0.94026 0.91362 0.97143 1.21590 0.99081 0.93972 1.00063 1.21631 0.97855 0.93839 1.01965 1.22077 0.96236 0.88464 1.00132 1.60492 1.19760 1.01542 1.50072 1.21763 0.93801 0.88996 1.00552 1.22481 0.95629 0.94276 0.96582 1.22464 0.96904 1.01141 0.93937 1.22679 0.99464 0.96792 0.97349 1.22650 1.01287 0.98167 0.94023 1.23537 0.97680 0.90293 0.86327 0.90596 1.88855 1.81635 1.31912 1.27147 1.23556 0.95994 0.91231 0.92293 1.23284 0.99235 1.00280 0.95656 0.93101 0.96596 0.96765 0.93714 0.93445 0.91617 0.92828 0.95642 0.91235 0.84302 0.95402 0.90616 0.91618 0.89417 0.91239 0.91235 0.91387 0.90450 0.92448 0.89118 0.90360 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 11 C -0.11 -1.93 5.47 -26.73 -0.15 -2.08 16 12 C 0.06 0.82 5.68 -3.83 -0.02 0.79 16 13 N -0.69 -8.03 5.80 -113.78 -0.66 -8.69 16 14 C 0.08 0.79 4.79 -3.82 -0.02 0.77 16 15 C -0.09 -0.81 0.65 -152.02 -0.10 -0.91 16 16 C -0.11 -0.97 5.86 -24.99 -0.15 -1.12 16 17 C -0.13 -1.01 6.96 -24.35 -0.17 -1.18 16 18 C -0.12 -1.03 6.53 -24.70 -0.16 -1.20 16 19 C 0.08 0.75 4.02 -24.95 -0.10 0.65 16 20 H 0.08 0.69 7.90 -51.93 -0.41 0.28 16 21 O -0.38 -4.06 11.03 -35.23 -0.39 -4.44 16 22 C 0.05 0.40 7.72 38.21 0.29 0.69 16 23 C -0.15 -1.25 6.11 -24.84 -0.15 -1.40 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.91 8.14 -51.92 -0.42 0.48 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.34 3.76 6.91 -39.30 -0.27 3.49 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.59 7.23 -51.93 -0.38 0.21 16 37 H 0.09 0.92 7.39 -51.93 -0.38 0.54 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.68 8.01 -51.93 -0.42 0.27 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.65 6.35 -51.93 -0.33 0.32 16 45 H 0.08 0.68 7.23 -51.93 -0.38 0.31 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -30.44 348.64 -9.93 -40.37 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.44 Total: -2.03 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -1.41 Total: -20.74 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.08 Total: -35.27 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.39 Total: -4.44 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.44 -9.93 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.227 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds