Wall clock time and date at job start Mon Mar 30 2020 06:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86790 * 120.00021 * 2 1 4 4 H 1.48503 * 109.47497 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47388 * 300.00370 * 3 2 1 6 6 H 1.48507 * 109.47321 * 60.00227 * 3 2 1 7 7 C 1.37877 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99737 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00659 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47561 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47346 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47346 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47172 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99800 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46822 * 179.97438 * 14 13 12 16 16 C 1.54195 * 111.96619 * 61.01828 * 15 14 13 17 17 C 1.55107 * 103.85275 * 97.36839 * 16 15 14 18 18 C 1.55395 * 101.92996 * 40.55319 * 17 16 15 19 19 C 1.54444 * 104.20225 * 320.48491 * 18 17 16 20 20 H 1.09003 * 112.00770 * 261.63494 * 19 18 17 21 21 O 1.43811 * 108.48938 * 138.22569 * 19 18 17 22 22 C 1.44293 * 107.24781 * 220.00455 * 21 19 18 23 23 C 1.54591 * 112.01525 * 298.16788 * 15 14 13 24 24 H 0.97000 * 120.00551 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46979 * 59.99795 * 9 7 2 26 26 H 1.09000 * 109.46791 * 300.00440 * 9 7 2 27 27 H 1.09007 * 109.47042 * 59.99876 * 10 9 7 28 28 H 1.09000 * 109.47210 * 299.99917 * 10 9 7 29 29 H 1.08996 * 109.46785 * 59.99846 * 11 10 9 30 30 H 1.09000 * 109.46800 * 300.00048 * 11 10 9 31 31 H 1.09007 * 109.47042 * 59.99756 * 12 11 10 32 32 H 1.09000 * 109.47154 * 300.00583 * 12 11 10 33 33 H 1.00893 * 110.99895 * 303.95627 * 13 12 11 34 34 H 1.09003 * 109.46708 * 60.00666 * 14 13 12 35 35 H 1.08998 * 109.47155 * 300.00055 * 14 13 12 36 36 H 1.09002 * 110.57462 * 216.00246 * 16 15 14 37 37 H 1.09003 * 110.57638 * 338.73187 * 16 15 14 38 38 H 1.08996 * 110.90385 * 158.85243 * 17 16 15 39 39 H 1.09002 * 110.90411 * 282.44968 * 17 16 15 40 40 H 1.08998 * 110.47260 * 201.79781 * 18 17 16 41 41 H 1.09004 * 110.46602 * 79.16729 * 18 17 16 42 42 H 1.09000 * 110.61594 * 281.46975 * 22 21 19 43 43 H 1.08996 * 110.61924 * 158.46317 * 22 21 19 44 44 H 1.08997 * 110.90977 * 17.44386 * 23 15 14 45 45 H 1.08997 * 110.90791 * 141.01219 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9872 -0.0012 12 6 2.4745 -6.1501 -0.0005 13 7 1.7400 -7.4222 -0.0005 14 6 2.6645 -8.5639 -0.0005 15 6 1.8644 -9.8680 0.0001 16 6 0.9717 -9.9976 -1.2505 17 6 1.8063 -10.8833 -2.2123 18 6 2.4028 -11.9390 -1.2405 19 6 2.7646 -11.1288 0.0236 20 1 3.8217 -10.8642 0.0505 21 8 2.3852 -11.8947 1.1802 22 6 1.8250 -10.9730 2.1387 23 6 0.9851 -10.0078 1.2639 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8540 -5.0446 -0.8914 30 1 0.8533 -5.0451 0.8886 31 1 3.1006 -6.0924 0.8899 32 1 3.1019 -6.0922 -0.8900 33 1 1.1033 -7.4721 0.7805 34 1 3.2924 -8.5228 0.8895 35 1 3.2925 -8.5228 -0.8905 36 1 0.0301 -10.4861 -1.0000 37 1 0.7882 -9.0187 -1.6933 38 1 1.1678 -11.3547 -2.9593 39 1 2.5964 -10.3027 -2.6885 40 1 3.2953 -12.3926 -1.6716 41 1 1.6612 -12.7025 -1.0053 42 1 2.6157 -10.4310 2.6575 43 1 1.1881 -11.4989 2.8499 44 1 0.8590 -9.0447 1.7585 45 1 0.0180 -10.4464 1.0183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687468022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:16 Heat of formation + Delta-G solvation = -96.447929 kcal Electronic energy + Delta-G solvation = -20404.895571 eV Core-core repulsion = 17419.842690 eV Total energy + Delta-G solvation = -2985.052881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.49241 -37.94535 -36.58154 -35.70608 -34.18453 -32.63416 -30.30398 -28.81461 -28.21655 -26.42636 -24.95634 -23.26350 -22.50102 -21.78641 -21.55326 -19.97539 -18.45251 -17.61156 -17.17778 -16.73238 -16.52998 -16.18811 -15.77213 -15.38068 -15.23493 -14.70962 -14.52809 -14.38351 -14.04363 -13.77669 -13.56136 -13.13794 -12.91767 -12.85914 -12.72809 -12.35320 -12.29049 -12.19861 -12.06237 -11.81449 -11.71827 -11.66052 -11.53314 -11.38106 -11.28397 -11.26766 -10.93911 -10.57895 -10.56143 -9.35474 -8.20304 -6.31666 1.39428 1.39792 1.53280 2.40628 2.85380 3.04576 3.12516 3.43252 3.71191 3.86119 4.06334 4.11607 4.16609 4.21125 4.23035 4.29348 4.35958 4.46779 4.54667 4.56741 4.65285 4.71638 4.78601 4.79817 4.87136 4.87761 4.92648 5.03450 5.07057 5.09725 5.14420 5.25028 5.26114 5.29026 5.36574 5.41805 5.48164 5.55559 5.78380 5.87105 5.98375 6.06692 6.25884 6.44750 6.86300 7.37769 8.91801 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.002656 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.526611 B =10538.526960 C =10701.839193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.104 4.104 12 C 0.072 3.928 13 N -0.689 5.689 14 C 0.082 3.918 15 C -0.086 4.086 16 C -0.106 4.106 17 C -0.121 4.121 18 C -0.121 4.121 19 C 0.076 3.924 20 H 0.078 0.922 21 O -0.395 6.395 22 C 0.043 3.957 23 C -0.145 4.145 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.011 1.011 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.342 0.658 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 -25.005 0.323 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.142 4.142 12 C -0.057 4.057 13 N -0.321 5.321 14 C -0.047 4.047 15 C -0.086 4.086 16 C -0.144 4.144 17 C -0.159 4.159 18 C -0.158 4.158 19 C 0.018 3.982 20 H 0.096 0.904 21 O -0.315 6.315 22 C -0.033 4.033 23 C -0.183 4.183 24 H 0.072 0.928 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.100 0.900 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.597 -25.137 -0.329 25.557 hybrid contribution 0.345 1.372 1.003 1.734 sum 4.943 -23.766 0.674 24.284 Atomic orbital electron populations 1.70108 1.07839 1.27709 1.51842 1.26019 0.95803 1.03478 0.94771 0.85386 0.79072 0.78683 0.77830 1.18547 1.20320 1.20297 1.21781 0.93560 0.92563 1.50298 0.92238 1.19023 0.94516 0.93295 0.94607 1.21399 0.97971 0.93756 1.00410 1.21450 0.98026 0.93286 1.01488 1.21835 0.95247 0.88114 1.00533 1.60425 1.20002 1.01193 1.50464 1.21746 0.93591 0.88656 1.00683 1.22418 0.95593 0.93724 0.96883 1.22428 0.97186 1.00582 0.94169 1.22663 0.99423 0.96520 0.97255 1.22633 1.01572 0.97979 0.93664 1.23617 0.97791 0.90337 0.86414 0.90390 1.88837 1.81883 1.32911 1.27837 1.23675 0.96251 0.91181 0.92210 1.23276 0.99175 1.00454 0.95393 0.92770 0.99250 0.99222 0.93183 0.93112 0.92573 0.92891 0.95038 0.91053 0.83834 0.95082 0.90611 0.91537 0.90819 0.90399 0.91103 0.90435 0.90953 0.92103 0.87911 0.90040 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.58 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.99 5.15 30.59 0.16 -3.83 16 11 C -0.10 -3.46 5.47 30.59 0.17 -3.30 16 12 C 0.07 1.85 5.68 86.30 0.49 2.35 16 13 N -0.69 -15.12 5.80 -513.88 -2.98 -18.10 16 14 C 0.08 1.53 4.79 86.30 0.41 1.94 16 15 C -0.09 -1.44 0.65 -50.57 -0.03 -1.47 16 16 C -0.11 -1.81 5.86 31.72 0.19 -1.63 16 17 C -0.12 -1.78 6.96 32.14 0.22 -1.56 16 18 C -0.12 -1.85 6.53 31.91 0.21 -1.64 16 19 C 0.08 1.33 4.02 31.75 0.13 1.45 16 20 H 0.08 1.31 7.90 -2.39 -0.02 1.29 16 21 O -0.39 -8.00 11.03 -148.98 -1.64 -9.65 16 22 C 0.04 0.68 7.72 72.66 0.56 1.24 16 23 C -0.15 -2.28 6.11 31.82 0.19 -2.08 16 24 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 26 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 27 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.34 7.11 6.91 -89.70 -0.62 6.49 16 34 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.12 7.23 -2.39 -0.02 1.10 16 37 H 0.07 1.48 7.39 -2.39 -0.02 1.46 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.19 8.01 -2.39 -0.02 1.17 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.22 6.35 -2.39 -0.02 1.21 16 45 H 0.08 1.28 7.23 -2.39 -0.02 1.27 16 Total: -1.00 -64.76 348.64 1.54 -63.22 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.31 Total: 13.51 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 3.54 Total: -38.22 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -2.69 Total: -75.59 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -1.64 Total: -9.65 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.76 1.54 -63.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.226 kcal (2) G-P(sol) polarization free energy of solvation -64.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds