Wall clock time and date at job start Mon Mar 30 2020 06:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47284 * 269.99831 * 3 2 1 5 5 H 1.48501 * 109.47269 * 30.00010 * 3 2 1 6 6 H 1.48499 * 109.47360 * 149.99794 * 3 2 1 7 7 C 1.37871 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47515 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46700 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 C 1.51080 * 110.62172 * 78.39919 * 15 14 13 17 17 C 1.56700 * 104.03413 * 83.94128 * 16 15 14 18 18 C 1.56244 * 106.04074 * 6.33292 * 17 16 15 19 19 C 1.50713 * 101.86158 * 25.03178 * 18 17 16 20 20 H 1.09003 * 108.30788 * 67.83313 * 19 18 17 21 21 O 1.39681 * 127.81833 * 201.28886 * 19 18 17 22 22 C 1.46168 * 103.81348 * 161.63988 * 21 19 18 23 23 C 1.51589 * 110.62624 * 298.98635 * 15 14 13 24 24 H 0.96997 * 119.99623 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46804 * 59.99500 * 9 7 2 26 26 H 1.09005 * 109.46778 * 300.00160 * 9 7 2 27 27 H 1.08993 * 109.47020 * 59.99491 * 10 9 7 28 28 H 1.09005 * 109.46779 * 300.00252 * 10 9 7 29 29 H 1.08995 * 109.47485 * 60.00352 * 11 10 9 30 30 H 1.08996 * 109.47010 * 299.99144 * 11 10 9 31 31 H 1.09004 * 109.46889 * 60.00145 * 12 11 10 32 32 H 1.08995 * 109.47384 * 299.99786 * 12 11 10 33 33 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 34 34 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 35 35 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 36 36 H 1.08996 * 110.43193 * 201.70517 * 16 15 14 37 37 H 1.09006 * 110.42453 * 324.19005 * 16 15 14 38 38 H 1.09005 * 109.67689 * 247.40754 * 17 16 15 39 39 H 1.08995 * 110.51059 * 125.71100 * 17 16 15 40 40 H 1.09002 * 110.95523 * 266.89239 * 18 17 16 41 41 H 1.09005 * 110.95018 * 143.17100 * 18 17 16 42 42 H 1.08994 * 110.03769 * 212.69178 * 22 21 19 43 43 H 1.09003 * 110.07161 * 91.28162 * 22 21 19 44 44 H 1.08998 * 110.85776 * 33.56335 * 23 15 14 45 45 H 1.08999 * 110.86327 * 157.21682 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9870 -0.0033 12 6 2.4746 -6.1499 -0.0037 13 7 1.7401 -7.4221 -0.0048 14 6 2.6646 -8.5638 -0.0046 15 6 1.8645 -9.8679 -0.0065 16 6 1.3455 -10.1717 -1.3924 17 6 2.5464 -10.8883 -2.0993 18 6 3.6356 -11.0934 -0.9980 19 6 2.8059 -11.1037 0.2602 20 1 2.1915 -12.0040 0.2578 21 8 3.2286 -10.8489 1.5669 22 6 1.9892 -10.5531 2.2831 23 6 0.9979 -9.9644 1.2335 24 1 -0.4849 0.8401 -0.0004 25 1 0.6248 -2.5562 -0.8919 26 1 0.6241 -2.5574 0.8880 27 1 2.8713 -3.6047 0.8889 28 1 2.8727 -3.6039 -0.8910 29 1 0.8547 -5.0442 -0.8940 30 1 0.8528 -5.0454 0.8860 31 1 3.1006 -6.0930 0.8869 32 1 3.1019 -6.0914 -0.8931 33 1 1.1033 -7.4728 0.7763 34 1 3.2933 -8.5223 -0.8941 35 1 3.2918 -8.5232 0.8859 36 1 0.4917 -10.8472 -1.3393 37 1 1.0714 -9.2504 -1.9064 38 1 2.9337 -10.2547 -2.8973 39 1 2.2330 -11.8515 -2.5019 40 1 4.3438 -10.2649 -0.9911 41 1 4.1515 -12.0442 -1.1324 42 1 2.1777 -9.8223 3.0695 43 1 1.5786 -11.4666 2.7133 44 1 0.6480 -8.9787 1.5402 45 1 0.1595 -10.6413 1.0694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687468025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:19 Heat of formation + Delta-G solvation = -56.344631 kcal Electronic energy + Delta-G solvation = -20573.455818 eV Core-core repulsion = 17590.141947 eV Total energy + Delta-G solvation = -2983.313872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.42690 -36.82993 -35.96615 -34.09555 -32.50730 -31.52163 -28.78403 -28.01379 -27.31498 -25.20064 -23.61223 -22.45577 -21.33592 -20.73641 -20.05525 -19.15747 -17.00857 -16.19748 -16.11193 -15.85806 -15.68803 -15.14325 -14.48946 -14.37598 -14.15845 -13.72827 -13.30238 -12.77729 -12.68616 -12.57817 -12.42321 -12.18542 -11.85018 -11.59263 -11.51260 -11.40047 -10.99902 -10.88317 -10.80897 -10.67235 -10.53624 -10.44999 -10.42048 -10.36861 -9.69343 -9.60241 -9.22314 -8.97433 -8.32514 -8.29709 -5.95967 -3.98075 3.12464 3.34112 3.40022 3.43678 4.12818 4.26279 4.32854 4.49161 4.58515 4.69893 4.72987 4.94706 4.99277 5.07122 5.09186 5.18076 5.28157 5.39406 5.43362 5.50789 5.55730 5.57445 5.64120 5.66103 5.68813 5.78533 5.90087 5.94354 5.98539 6.02269 6.17815 6.19315 6.29299 6.54550 6.64081 6.85606 6.99423 7.08206 7.26473 7.45133 7.73276 7.89374 8.05368 8.48328 9.09489 9.65703 11.15430 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.002780 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.456871 B =10069.823816 C =10216.185466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.688 5.688 14 C 0.076 3.924 15 C -0.106 4.106 16 C -0.101 4.101 17 C -0.119 4.119 18 C -0.106 4.106 19 C 0.062 3.938 20 H 0.054 0.946 21 O -0.356 6.356 22 C 0.046 3.954 23 C -0.139 4.139 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.335 0.665 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -25.656 0.020 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.152 4.152 12 C -0.069 4.069 13 N -0.320 5.320 14 C -0.053 4.053 15 C -0.106 4.106 16 C -0.138 4.138 17 C -0.157 4.157 18 C -0.143 4.143 19 C 0.003 3.997 20 H 0.072 0.928 21 O -0.275 6.275 22 C -0.031 4.031 23 C -0.177 4.177 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.328 -25.546 -0.570 25.768 hybrid contribution 0.514 0.986 0.968 1.474 sum 3.842 -24.560 0.398 24.861 Atomic orbital electron populations 1.69972 1.06044 1.26496 1.51093 1.25035 0.94850 0.99229 0.95444 0.86609 0.79847 0.83550 0.78083 1.20677 1.21248 1.19913 1.21299 0.93024 0.91238 1.50251 0.92781 1.19089 0.94023 0.91348 0.97122 1.21589 0.99079 0.93986 1.00069 1.21628 0.97859 0.93877 1.01885 1.22061 0.96195 0.88528 1.00083 1.60549 1.19913 1.01656 1.49915 1.21822 0.93818 0.88755 1.00930 1.22138 0.97216 0.96141 0.95154 1.21765 0.96981 1.01050 0.94025 1.23007 0.94669 1.00557 0.97462 1.21834 0.97864 1.02669 0.91956 1.22540 0.95662 0.96691 0.84855 0.92815 1.88474 1.28723 1.90084 1.20207 1.24070 0.83858 0.99882 0.95242 1.22437 0.97946 1.02357 0.94993 0.93065 0.96619 0.96767 0.93702 0.93461 0.91683 0.92871 0.95684 0.91345 0.84535 0.90881 0.94743 0.91921 0.89610 0.90963 0.91383 0.90456 0.90983 0.89490 0.91697 0.89981 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.11 -1.99 5.47 -26.73 -0.15 -2.14 16 12 C 0.06 0.87 5.69 -3.82 -0.02 0.85 16 13 N -0.69 -8.67 6.43 -113.78 -0.73 -9.40 16 14 C 0.08 0.86 3.99 -3.82 -0.02 0.84 16 15 C -0.11 -0.99 0.76 -153.67 -0.12 -1.11 16 16 C -0.10 -0.87 6.15 -25.70 -0.16 -1.03 16 17 C -0.12 -0.89 6.70 -22.99 -0.15 -1.04 16 18 C -0.11 -0.87 6.31 -26.14 -0.16 -1.03 16 19 C 0.06 0.59 3.12 -25.35 -0.08 0.51 16 20 H 0.05 0.48 8.01 -51.93 -0.42 0.06 16 21 O -0.36 -4.00 10.73 -32.05 -0.34 -4.34 16 22 C 0.05 0.40 7.48 38.72 0.29 0.68 16 23 C -0.14 -1.18 6.24 -25.89 -0.16 -1.34 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.34 4.00 6.61 -39.29 -0.26 3.74 16 34 H 0.07 0.84 6.70 -51.93 -0.35 0.50 16 35 H 0.03 0.43 7.26 -51.93 -0.38 0.05 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.87 7.92 -51.93 -0.41 0.46 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.68 6.96 -51.93 -0.36 0.32 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.71 5.98 -51.93 -0.31 0.40 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -30.95 345.53 -9.94 -40.88 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.37 Total: -1.86 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -1.42 Total: -20.74 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.01 Total: -36.16 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.34 Total: -4.34 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.95 -9.94 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.464 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds