Wall clock time and date at job start Mon Mar 30 2020 06:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47284 * 269.99831 * 3 2 1 5 5 H 1.48501 * 109.47269 * 30.00010 * 3 2 1 6 6 H 1.48499 * 109.47360 * 149.99794 * 3 2 1 7 7 C 1.37871 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47515 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46700 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 C 1.51080 * 110.62172 * 78.39919 * 15 14 13 17 17 C 1.56700 * 104.03413 * 83.94128 * 16 15 14 18 18 C 1.56244 * 106.04074 * 6.33292 * 17 16 15 19 19 C 1.50713 * 101.86158 * 25.03178 * 18 17 16 20 20 H 1.09003 * 108.30788 * 67.83313 * 19 18 17 21 21 O 1.39681 * 127.81833 * 201.28886 * 19 18 17 22 22 C 1.46168 * 103.81348 * 161.63988 * 21 19 18 23 23 C 1.51589 * 110.62624 * 298.98635 * 15 14 13 24 24 H 0.96997 * 119.99623 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46804 * 59.99500 * 9 7 2 26 26 H 1.09005 * 109.46778 * 300.00160 * 9 7 2 27 27 H 1.08993 * 109.47020 * 59.99491 * 10 9 7 28 28 H 1.09005 * 109.46779 * 300.00252 * 10 9 7 29 29 H 1.08995 * 109.47485 * 60.00352 * 11 10 9 30 30 H 1.08996 * 109.47010 * 299.99144 * 11 10 9 31 31 H 1.09004 * 109.46889 * 60.00145 * 12 11 10 32 32 H 1.08995 * 109.47384 * 299.99786 * 12 11 10 33 33 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 34 34 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 35 35 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 36 36 H 1.08996 * 110.43193 * 201.70517 * 16 15 14 37 37 H 1.09006 * 110.42453 * 324.19005 * 16 15 14 38 38 H 1.09005 * 109.67689 * 247.40754 * 17 16 15 39 39 H 1.08995 * 110.51059 * 125.71100 * 17 16 15 40 40 H 1.09002 * 110.95523 * 266.89239 * 18 17 16 41 41 H 1.09005 * 110.95018 * 143.17100 * 18 17 16 42 42 H 1.08994 * 110.03769 * 212.69178 * 22 21 19 43 43 H 1.09003 * 110.07161 * 91.28162 * 22 21 19 44 44 H 1.08998 * 110.85776 * 33.56335 * 23 15 14 45 45 H 1.08999 * 110.86327 * 157.21682 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9870 -0.0033 12 6 2.4746 -6.1499 -0.0037 13 7 1.7401 -7.4221 -0.0048 14 6 2.6646 -8.5638 -0.0046 15 6 1.8645 -9.8679 -0.0065 16 6 1.3455 -10.1717 -1.3924 17 6 2.5464 -10.8883 -2.0993 18 6 3.6356 -11.0934 -0.9980 19 6 2.8059 -11.1037 0.2602 20 1 2.1915 -12.0040 0.2578 21 8 3.2286 -10.8489 1.5669 22 6 1.9892 -10.5531 2.2831 23 6 0.9979 -9.9644 1.2335 24 1 -0.4849 0.8401 -0.0004 25 1 0.6248 -2.5562 -0.8919 26 1 0.6241 -2.5574 0.8880 27 1 2.8713 -3.6047 0.8889 28 1 2.8727 -3.6039 -0.8910 29 1 0.8547 -5.0442 -0.8940 30 1 0.8528 -5.0454 0.8860 31 1 3.1006 -6.0930 0.8869 32 1 3.1019 -6.0914 -0.8931 33 1 1.1033 -7.4728 0.7763 34 1 3.2933 -8.5223 -0.8941 35 1 3.2918 -8.5232 0.8859 36 1 0.4917 -10.8472 -1.3393 37 1 1.0714 -9.2504 -1.9064 38 1 2.9337 -10.2547 -2.8973 39 1 2.2330 -11.8515 -2.5019 40 1 4.3438 -10.2649 -0.9911 41 1 4.1515 -12.0442 -1.1324 42 1 2.1777 -9.8223 3.0695 43 1 1.5786 -11.4666 2.7133 44 1 0.6480 -8.9787 1.5402 45 1 0.1595 -10.6413 1.0694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687468025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:19 Heat of formation + Delta-G solvation = -75.000078 kcal Electronic energy + Delta-G solvation = -20574.264779 eV Core-core repulsion = 17590.141947 eV Total energy + Delta-G solvation = -2984.122833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.15385 -37.92718 -36.91185 -35.75939 -34.12820 -32.65598 -30.27353 -28.68784 -28.33555 -26.62266 -25.00074 -23.30118 -22.67661 -21.81456 -21.39092 -19.96476 -18.44507 -17.75247 -17.06324 -16.63059 -16.58921 -16.42385 -16.20658 -15.43923 -15.12156 -14.85671 -14.49738 -14.20026 -13.80282 -13.64938 -13.39145 -13.31954 -13.13592 -13.00050 -12.82973 -12.52633 -12.32279 -12.22735 -12.14177 -12.08420 -11.55924 -11.51520 -11.42281 -11.34633 -11.28739 -11.15211 -10.96192 -10.55802 -10.39601 -9.36399 -8.20376 -6.31918 1.39171 1.40941 1.52082 2.40272 2.43083 3.12263 3.18747 3.55794 3.63634 3.83736 4.04294 4.06208 4.09648 4.19747 4.29265 4.31094 4.38565 4.43032 4.46871 4.53678 4.62243 4.64808 4.73675 4.81572 4.88198 4.90949 4.96347 4.98261 5.03394 5.11640 5.22342 5.24192 5.26384 5.27498 5.32818 5.34817 5.50692 5.54348 5.77274 5.86254 5.93181 6.07216 6.25487 6.44303 6.85517 7.37416 8.91557 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.002780 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.456871 B =10069.823816 C =10216.185466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.098 4.098 11 C -0.103 4.103 12 C 0.071 3.929 13 N -0.688 5.688 14 C 0.082 3.918 15 C -0.105 4.105 16 C -0.100 4.100 17 C -0.114 4.114 18 C -0.107 4.107 19 C 0.059 3.941 20 H 0.063 0.937 21 O -0.381 6.381 22 C 0.042 3.958 23 C -0.138 4.138 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.340 0.660 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -26.517 -0.091 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.136 4.136 11 C -0.141 4.141 12 C -0.058 4.058 13 N -0.320 5.320 14 C -0.047 4.047 15 C -0.106 4.106 16 C -0.138 4.138 17 C -0.151 4.151 18 C -0.145 4.145 19 C 0.000 4.000 20 H 0.081 0.919 21 O -0.301 6.301 22 C -0.033 4.033 23 C -0.176 4.176 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.160 0.840 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.072 -26.425 -0.680 26.745 hybrid contribution 0.250 1.231 1.015 1.614 sum 4.322 -25.194 0.334 25.564 Atomic orbital electron populations 1.70104 1.07832 1.27785 1.51726 1.26020 0.95816 1.03469 0.94712 0.85430 0.78646 0.78314 0.78560 1.19679 1.20611 1.18743 1.21750 0.93553 0.92581 1.50507 0.92277 1.19013 0.94472 0.93213 0.94644 1.21402 0.98011 0.93793 1.00362 1.21442 0.97947 0.93188 1.01527 1.21831 0.95306 0.88391 1.00236 1.60504 1.20026 1.01231 1.50251 1.21777 0.93646 0.89193 1.00099 1.22130 0.97374 0.95111 0.95980 1.21749 0.97923 1.00717 0.93377 1.22989 0.93845 1.01261 0.97025 1.21884 0.97912 1.02935 0.91722 1.22671 0.95951 0.96787 0.84578 0.91888 1.88445 1.30186 1.90283 1.21146 1.24197 0.83223 1.00756 0.95151 1.22457 0.98205 1.02547 0.94387 0.92744 0.99177 0.99188 0.93300 0.93125 0.92444 0.92854 0.95499 0.91263 0.83979 0.91266 0.95958 0.90736 0.91250 0.91037 0.89701 0.91527 0.89734 0.89488 0.90057 0.90369 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -32.06 9.11 25.60 0.23 -31.82 16 8 H 0.06 3.32 7.74 -2.90 -0.02 3.30 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 11 C -0.10 -3.57 5.47 30.59 0.17 -3.40 16 12 C 0.07 2.03 5.69 86.30 0.49 2.52 16 13 N -0.69 -16.78 6.43 -513.88 -3.30 -20.08 16 14 C 0.08 1.78 3.99 86.30 0.34 2.13 16 15 C -0.11 -1.84 0.76 -51.64 -0.04 -1.88 16 16 C -0.10 -1.58 6.15 31.26 0.19 -1.39 16 17 C -0.11 -1.49 6.70 33.02 0.22 -1.27 16 18 C -0.11 -1.60 6.31 30.98 0.20 -1.41 16 19 C 0.06 1.03 3.12 31.49 0.10 1.13 16 20 H 0.06 0.98 8.01 -2.39 -0.02 0.96 16 21 O -0.38 -8.15 10.73 -137.61 -1.48 -9.62 16 22 C 0.04 0.68 7.48 72.99 0.55 1.22 16 23 C -0.14 -2.12 6.24 31.14 0.19 -1.93 16 24 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 25 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.34 7.81 6.61 -89.69 -0.59 7.22 16 34 H 0.07 1.56 6.70 -2.39 -0.02 1.54 16 35 H 0.02 0.54 7.26 -2.39 -0.02 0.53 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.34 7.92 -2.38 -0.02 1.32 16 38 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 1.13 6.96 -2.39 -0.02 1.11 16 41 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.26 5.98 -2.39 -0.01 1.24 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -66.17 345.53 1.29 -64.89 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.34 Total: 13.87 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 3.41 Total: -38.31 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -3.02 Total: -77.90 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.48 Total: -9.62 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -66.17 1.29 -64.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.114 kcal (2) G-P(sol) polarization free energy of solvation -66.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds