Wall clock time and date at job start Mon Mar 30 2020 06:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00519 * 2 1 4 4 H 1.48500 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47027 * 300.00090 * 3 2 1 6 6 H 1.48497 * 109.47257 * 59.99411 * 3 2 1 7 7 C 1.37881 * 119.99453 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46976 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46976 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99895 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47463 * 179.97438 * 14 13 12 16 16 C 1.51079 * 111.06320 * 291.53773 * 15 14 13 17 17 C 1.55707 * 104.51123 * 276.88516 * 16 15 14 18 18 C 1.56247 * 105.89213 * 352.87569 * 17 16 15 19 19 C 1.50720 * 101.85944 * 335.46621 * 18 17 16 20 20 H 1.09000 * 108.32263 * 292.13621 * 19 18 17 21 21 O 1.39695 * 127.78400 * 158.66917 * 19 18 17 22 22 C 1.46160 * 103.81339 * 198.39258 * 21 19 18 23 23 C 1.51578 * 110.61815 * 71.43433 * 15 14 13 24 24 H 0.97006 * 119.99302 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47082 * 59.99354 * 9 7 2 26 26 H 1.09007 * 109.46958 * 299.99592 * 9 7 2 27 27 H 1.08999 * 109.47021 * 59.99678 * 10 9 7 28 28 H 1.08997 * 109.47067 * 299.99808 * 10 9 7 29 29 H 1.09003 * 109.46957 * 59.99743 * 11 10 9 30 30 H 1.08996 * 109.46838 * 299.99654 * 11 10 9 31 31 H 1.08999 * 109.47021 * 59.99946 * 12 11 10 32 32 H 1.09007 * 109.47011 * 300.00024 * 12 11 10 33 33 H 1.00904 * 111.00040 * 303.94930 * 13 12 11 34 34 H 1.09002 * 109.47311 * 59.99787 * 14 13 12 35 35 H 1.08995 * 109.47381 * 299.99639 * 14 13 12 36 36 H 1.09001 * 110.42716 * 35.64226 * 16 15 14 37 37 H 1.09002 * 110.43164 * 158.12202 * 16 15 14 38 38 H 1.08994 * 110.16946 * 111.98446 * 17 16 15 39 39 H 1.08998 * 110.16545 * 233.77326 * 17 16 15 40 40 H 1.08998 * 110.95543 * 217.32335 * 18 17 16 41 41 H 1.09008 * 110.94944 * 93.60328 * 18 17 16 42 42 H 1.09002 * 110.03485 * 147.31683 * 22 21 19 43 43 H 1.09001 * 110.03768 * 268.70076 * 22 21 19 44 44 H 1.09004 * 110.85877 * 326.42289 * 23 15 14 45 45 H 1.09006 * 111.03652 * 202.85466 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9872 0.0012 12 6 2.4741 -6.1502 0.0005 13 7 1.7395 -7.4223 0.0005 14 6 2.6639 -8.5639 0.0005 15 6 1.8638 -9.8681 0.0012 16 6 1.1391 -10.0598 1.3129 17 6 2.2066 -10.6809 2.2612 18 6 3.4515 -10.9808 1.3659 19 6 2.8262 -11.1163 0.0012 20 1 2.2129 -12.0173 -0.0068 21 8 3.4482 -10.9819 -1.2424 22 6 2.3370 -10.7642 -2.1666 23 6 1.1992 -10.0872 -1.3434 24 1 -0.4849 0.8402 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8904 27 1 2.8717 -3.6045 0.8905 28 1 2.8717 -3.6045 -0.8894 29 1 0.8529 -5.0451 -0.8886 30 1 0.8536 -5.0446 0.8914 31 1 3.1014 -6.0924 0.8900 32 1 3.1001 -6.0925 -0.8900 33 1 1.1034 -7.4725 0.7822 34 1 3.2919 -8.5230 0.8905 35 1 3.2918 -8.5231 -0.8894 36 1 0.7965 -9.1010 1.7020 37 1 0.2987 -10.7425 1.1871 38 1 2.4701 -9.9720 3.0459 39 1 1.8280 -11.6042 2.6997 40 1 3.9338 -11.9106 1.6676 41 1 4.1581 -10.1511 1.3902 42 1 2.6503 -10.1090 -2.9795 43 1 1.9924 -11.7174 -2.5675 44 1 0.9080 -9.1373 -1.7918 45 1 0.3392 -10.7507 -1.2513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687468026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:22 Heat of formation + Delta-G solvation = -57.447599 kcal Electronic energy + Delta-G solvation = -20568.827049 eV Core-core repulsion = 17585.465349 eV Total energy + Delta-G solvation = -2983.361700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.41751 -36.93566 -35.91218 -34.03217 -32.47275 -31.56711 -28.77669 -28.14109 -27.25400 -25.21876 -23.55265 -22.37151 -21.42673 -20.72912 -20.05200 -19.11843 -17.07327 -16.21106 -16.10338 -15.86791 -15.51102 -15.22414 -14.49113 -14.37427 -14.08975 -13.81460 -13.23941 -12.93200 -12.63025 -12.54013 -12.32956 -12.26156 -11.80223 -11.66873 -11.49887 -11.40522 -11.02988 -10.92402 -10.83375 -10.62635 -10.49589 -10.46092 -10.41860 -10.35964 -9.66715 -9.60526 -9.22410 -8.96473 -8.32786 -8.30048 -5.96264 -3.98227 3.13629 3.32948 3.40200 3.44722 4.16843 4.24531 4.33895 4.49138 4.60046 4.73836 4.77592 4.94669 4.97455 5.06031 5.08509 5.19882 5.31329 5.39224 5.43339 5.45467 5.54086 5.58490 5.61741 5.68534 5.70828 5.77719 5.89955 5.94019 5.98411 6.04930 6.12206 6.19163 6.29386 6.54333 6.67582 6.85604 6.99386 7.08172 7.26398 7.46316 7.73437 7.89233 8.05186 8.48250 9.09572 9.65579 11.15154 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037923 B = 0.002776 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.162503 B =10083.727137 C =10225.874813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.688 5.688 14 C 0.078 3.922 15 C -0.107 4.107 16 C -0.107 4.107 17 C -0.119 4.119 18 C -0.107 4.107 19 C 0.063 3.937 20 H 0.054 0.946 21 O -0.357 6.357 22 C 0.046 3.954 23 C -0.132 4.132 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.336 0.664 34 H 0.030 0.970 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 -25.588 1.385 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.152 4.152 12 C -0.068 4.068 13 N -0.320 5.320 14 C -0.051 4.051 15 C -0.108 4.108 16 C -0.144 4.144 17 C -0.157 4.157 18 C -0.145 4.145 19 C 0.004 3.996 20 H 0.072 0.928 21 O -0.276 6.276 22 C -0.030 4.030 23 C -0.170 4.170 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.235 -25.487 0.647 25.699 hybrid contribution 0.511 0.981 0.902 1.428 sum 3.746 -24.505 1.549 24.838 Atomic orbital electron populations 1.69985 1.06043 1.26377 1.51180 1.25040 0.94852 0.99246 0.95457 0.86554 0.80133 0.83881 0.77546 1.19761 1.21021 1.21057 1.21337 0.93061 0.91222 1.50116 0.92726 1.19096 0.94030 0.91368 0.97126 1.21591 0.99075 0.93988 1.00067 1.21630 0.97859 0.93872 1.01887 1.22057 0.96176 0.88514 1.00081 1.60489 1.19975 1.01644 1.49859 1.21817 0.93709 0.88704 1.00919 1.22123 0.97665 0.96167 0.94804 1.21631 0.97550 1.01319 0.93928 1.22844 0.94133 1.00955 0.97772 1.21855 0.98115 1.02563 0.91939 1.22523 0.93537 0.96764 0.86825 0.92838 1.88466 1.29577 1.92882 1.16670 1.24084 0.86211 0.99710 0.92964 1.22358 0.97208 1.02393 0.95027 0.93126 0.96621 0.96756 0.93720 0.93450 0.91700 0.92851 0.95708 0.91344 0.84522 0.95181 0.90605 0.91107 0.91196 0.91032 0.91233 0.90931 0.90400 0.89327 0.91967 0.88617 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 11 C -0.11 -1.99 5.47 -26.73 -0.15 -2.13 16 12 C 0.06 0.88 5.68 -3.83 -0.02 0.85 16 13 N -0.69 -8.60 6.14 -113.78 -0.70 -9.30 16 14 C 0.08 0.87 4.12 -3.83 -0.02 0.86 16 15 C -0.11 -1.00 0.75 -153.67 -0.12 -1.12 16 16 C -0.11 -0.86 6.06 -26.26 -0.16 -1.02 16 17 C -0.12 -0.85 6.74 -23.55 -0.16 -1.01 16 18 C -0.11 -0.88 6.31 -26.13 -0.16 -1.04 16 19 C 0.06 0.60 3.12 -25.35 -0.08 0.52 16 20 H 0.05 0.48 8.01 -51.93 -0.42 0.06 16 21 O -0.36 -4.05 10.87 -32.09 -0.35 -4.40 16 22 C 0.05 0.42 7.38 38.71 0.29 0.70 16 23 C -0.13 -1.20 6.26 -25.90 -0.16 -1.36 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.40 8.14 -51.92 -0.42 -0.03 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 33 H 0.34 3.96 7.06 -39.29 -0.28 3.69 16 34 H 0.03 0.34 6.33 -51.93 -0.33 0.01 16 35 H 0.08 0.96 7.36 -51.93 -0.38 0.58 16 36 H 0.07 0.60 6.42 -51.93 -0.33 0.27 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.69 6.72 -51.92 -0.35 0.35 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.99 7.68 -51.93 -0.40 0.59 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -30.83 345.51 -9.92 -40.75 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.37 Total: -1.87 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -1.42 Total: -20.66 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.04 Total: -36.03 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.35 Total: -4.40 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.83 -9.92 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.700 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds