Wall clock time and date at job start Mon Mar 30 2020 06:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00519 * 2 1 4 4 H 1.48500 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47027 * 300.00090 * 3 2 1 6 6 H 1.48497 * 109.47257 * 59.99411 * 3 2 1 7 7 C 1.37881 * 119.99453 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46976 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46976 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99895 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47463 * 179.97438 * 14 13 12 16 16 C 1.51079 * 111.06320 * 291.53773 * 15 14 13 17 17 C 1.55707 * 104.51123 * 276.88516 * 16 15 14 18 18 C 1.56247 * 105.89213 * 352.87569 * 17 16 15 19 19 C 1.50720 * 101.85944 * 335.46621 * 18 17 16 20 20 H 1.09000 * 108.32263 * 292.13621 * 19 18 17 21 21 O 1.39695 * 127.78400 * 158.66917 * 19 18 17 22 22 C 1.46160 * 103.81339 * 198.39258 * 21 19 18 23 23 C 1.51578 * 110.61815 * 71.43433 * 15 14 13 24 24 H 0.97006 * 119.99302 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47082 * 59.99354 * 9 7 2 26 26 H 1.09007 * 109.46958 * 299.99592 * 9 7 2 27 27 H 1.08999 * 109.47021 * 59.99678 * 10 9 7 28 28 H 1.08997 * 109.47067 * 299.99808 * 10 9 7 29 29 H 1.09003 * 109.46957 * 59.99743 * 11 10 9 30 30 H 1.08996 * 109.46838 * 299.99654 * 11 10 9 31 31 H 1.08999 * 109.47021 * 59.99946 * 12 11 10 32 32 H 1.09007 * 109.47011 * 300.00024 * 12 11 10 33 33 H 1.00904 * 111.00040 * 303.94930 * 13 12 11 34 34 H 1.09002 * 109.47311 * 59.99787 * 14 13 12 35 35 H 1.08995 * 109.47381 * 299.99639 * 14 13 12 36 36 H 1.09001 * 110.42716 * 35.64226 * 16 15 14 37 37 H 1.09002 * 110.43164 * 158.12202 * 16 15 14 38 38 H 1.08994 * 110.16946 * 111.98446 * 17 16 15 39 39 H 1.08998 * 110.16545 * 233.77326 * 17 16 15 40 40 H 1.08998 * 110.95543 * 217.32335 * 18 17 16 41 41 H 1.09008 * 110.94944 * 93.60328 * 18 17 16 42 42 H 1.09002 * 110.03485 * 147.31683 * 22 21 19 43 43 H 1.09001 * 110.03768 * 268.70076 * 22 21 19 44 44 H 1.09004 * 110.85877 * 326.42289 * 23 15 14 45 45 H 1.09006 * 111.03652 * 202.85466 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9872 0.0012 12 6 2.4741 -6.1502 0.0005 13 7 1.7395 -7.4223 0.0005 14 6 2.6639 -8.5639 0.0005 15 6 1.8638 -9.8681 0.0012 16 6 1.1391 -10.0598 1.3129 17 6 2.2066 -10.6809 2.2612 18 6 3.4515 -10.9808 1.3659 19 6 2.8262 -11.1163 0.0012 20 1 2.2129 -12.0173 -0.0068 21 8 3.4482 -10.9819 -1.2424 22 6 2.3370 -10.7642 -2.1666 23 6 1.1992 -10.0872 -1.3434 24 1 -0.4849 0.8402 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8904 27 1 2.8717 -3.6045 0.8905 28 1 2.8717 -3.6045 -0.8894 29 1 0.8529 -5.0451 -0.8886 30 1 0.8536 -5.0446 0.8914 31 1 3.1014 -6.0924 0.8900 32 1 3.1001 -6.0925 -0.8900 33 1 1.1034 -7.4725 0.7822 34 1 3.2919 -8.5230 0.8905 35 1 3.2918 -8.5231 -0.8894 36 1 0.7965 -9.1010 1.7020 37 1 0.2987 -10.7425 1.1871 38 1 2.4701 -9.9720 3.0459 39 1 1.8280 -11.6042 2.6997 40 1 3.9338 -11.9106 1.6676 41 1 4.1581 -10.1511 1.3902 42 1 2.6503 -10.1090 -2.9795 43 1 1.9924 -11.7174 -2.5675 44 1 0.9080 -9.1373 -1.7918 45 1 0.3392 -10.7507 -1.2513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687468026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:22 Heat of formation + Delta-G solvation = -75.941284 kcal Electronic energy + Delta-G solvation = -20569.628995 eV Core-core repulsion = 17585.465349 eV Total energy + Delta-G solvation = -2984.163646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.14804 -37.98792 -36.92944 -35.69328 -34.07372 -32.69563 -30.29123 -28.79184 -28.26802 -26.63121 -24.97992 -23.06096 -22.88519 -21.82050 -21.38820 -19.91618 -18.45221 -17.82587 -17.05866 -16.58946 -16.57246 -16.37684 -16.18661 -15.48339 -15.10226 -14.85388 -14.49599 -14.20678 -13.75382 -13.68308 -13.47250 -13.29696 -13.11042 -12.92259 -12.86252 -12.57132 -12.31094 -12.24463 -12.14702 -12.08058 -11.61724 -11.48809 -11.39986 -11.34758 -11.27884 -11.14393 -10.95004 -10.56323 -10.38006 -9.34583 -8.20516 -6.31879 1.39243 1.39644 1.53285 2.40221 2.43096 3.12197 3.22198 3.55252 3.65462 3.85691 4.03646 4.07520 4.13062 4.20972 4.29347 4.30994 4.40882 4.42234 4.45182 4.54388 4.60752 4.67846 4.71867 4.83254 4.88845 4.91568 4.94530 4.97651 5.04998 5.12021 5.20691 5.24141 5.26456 5.31188 5.34907 5.37786 5.41297 5.54663 5.77464 5.86381 5.94953 6.08050 6.25643 6.47297 6.85734 7.37442 8.91587 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037923 B = 0.002776 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.162503 B =10083.727137 C =10225.874813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.023 3.977 10 C -0.098 4.098 11 C -0.103 4.103 12 C 0.072 3.928 13 N -0.688 5.688 14 C 0.083 3.917 15 C -0.106 4.106 16 C -0.107 4.107 17 C -0.114 4.114 18 C -0.109 4.109 19 C 0.059 3.941 20 H 0.063 0.937 21 O -0.382 6.382 22 C 0.044 3.956 23 C -0.130 4.130 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.009 1.009 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.343 0.657 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -26.424 1.939 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.014 4.014 10 C -0.136 4.136 11 C -0.141 4.141 12 C -0.057 4.057 13 N -0.320 5.320 14 C -0.046 4.046 15 C -0.106 4.106 16 C -0.144 4.144 17 C -0.151 4.151 18 C -0.146 4.146 19 C 0.000 4.000 20 H 0.081 0.919 21 O -0.301 6.301 22 C -0.032 4.032 23 C -0.167 4.167 24 H 0.072 0.928 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.162 0.838 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.898 -26.342 1.202 26.656 hybrid contribution 0.277 1.218 0.709 1.436 sum 4.175 -25.124 1.910 25.540 Atomic orbital electron populations 1.70114 1.07822 1.27708 1.51792 1.26022 0.95821 1.03471 0.94735 0.85378 0.79040 0.78645 0.77861 1.18607 1.20282 1.20231 1.21776 0.93543 0.92574 1.50385 0.92299 1.19019 0.94477 0.93221 0.94655 1.21404 0.98009 0.93815 1.00348 1.21442 0.97943 0.93168 1.01535 1.21819 0.95285 0.88385 1.00214 1.60417 1.20135 1.01172 1.50314 1.21755 0.93576 0.89152 1.00096 1.22113 0.97781 0.95101 0.95646 1.21660 0.98079 1.01516 0.93187 1.22830 0.93274 1.01700 0.97333 1.21910 0.98436 1.02733 0.91545 1.22678 0.93676 0.96911 0.86721 0.91914 1.88438 1.30893 1.93040 1.17731 1.24186 0.85752 1.00596 0.92650 1.22335 0.97714 1.01993 0.94706 0.92754 0.99237 0.99102 0.93198 0.93261 0.92582 0.92702 0.95197 0.91627 0.83820 0.95113 0.92240 0.91567 0.90025 0.90907 0.89598 0.89766 0.91551 0.89579 0.90267 0.90143 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.28 4.97 29.85 0.15 1.42 16 10 C -0.10 -4.12 5.15 30.60 0.16 -3.97 16 11 C -0.10 -3.55 5.47 30.60 0.17 -3.38 16 12 C 0.07 2.03 5.68 86.30 0.49 2.52 16 13 N -0.69 -16.64 6.14 -513.90 -3.16 -19.79 16 14 C 0.08 1.81 4.12 86.30 0.36 2.16 16 15 C -0.11 -1.84 0.75 -51.64 -0.04 -1.88 16 16 C -0.11 -1.51 6.06 30.90 0.19 -1.32 16 17 C -0.11 -1.38 6.74 32.66 0.22 -1.16 16 18 C -0.11 -1.60 6.31 30.98 0.20 -1.40 16 19 C 0.06 1.04 3.12 31.49 0.10 1.13 16 20 H 0.06 0.98 8.01 -2.39 -0.02 0.96 16 21 O -0.38 -8.33 10.87 -137.76 -1.50 -9.83 16 22 C 0.04 0.75 7.38 72.99 0.54 1.29 16 23 C -0.13 -2.19 6.26 31.13 0.19 -2.00 16 24 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.34 7.67 7.06 -89.69 -0.63 7.04 16 34 H 0.03 0.67 6.33 -2.39 -0.02 0.65 16 35 H 0.06 1.49 7.36 -2.39 -0.02 1.48 16 36 H 0.07 1.00 6.42 -2.39 -0.02 0.99 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.12 6.72 -2.38 -0.02 1.11 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.08 1.61 7.68 -2.38 -0.02 1.60 16 45 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -66.02 345.51 1.37 -64.65 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.30 Total: 13.65 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 3.41 Total: -38.02 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -2.87 Total: -77.53 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.50 Total: -9.83 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -66.02 1.37 -64.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.290 kcal (2) G-P(sol) polarization free energy of solvation -66.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds