Wall clock time and date at job start Mon Mar 30 2020 06:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46847 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46812 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46932 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47023 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99825 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47300 * 179.97438 * 14 13 12 16 16 C 1.54191 * 111.96692 * 298.98854 * 15 14 13 17 17 C 1.55104 * 103.71924 * 263.59701 * 16 15 14 18 18 C 1.54999 * 102.10888 * 319.42555 * 17 16 15 19 19 C 1.54452 * 104.15918 * 39.55588 * 18 17 16 20 20 H 1.09001 * 110.63129 * 97.55985 * 19 18 17 21 21 O 1.43809 * 109.34763 * 221.35398 * 19 18 17 22 22 C 1.44290 * 107.24232 * 140.41416 * 21 19 18 23 23 C 1.54597 * 112.01205 * 61.83468 * 15 14 13 24 24 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 26 26 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 27 27 H 1.09000 * 109.46719 * 299.99848 * 10 9 7 28 28 H 1.08994 * 109.47402 * 59.99779 * 10 9 7 29 29 H 1.09000 * 109.47115 * 299.99312 * 11 10 9 30 30 H 1.08994 * 109.47558 * 59.99580 * 11 10 9 31 31 H 1.09004 * 109.47105 * 299.99750 * 12 11 10 32 32 H 1.08998 * 109.47779 * 59.99298 * 12 11 10 33 33 H 1.00894 * 111.00034 * 303.94641 * 13 12 11 34 34 H 1.09007 * 109.47351 * 300.00097 * 14 13 12 35 35 H 1.08999 * 109.47003 * 60.00045 * 14 13 12 36 36 H 1.09002 * 110.58082 * 22.15884 * 16 15 14 37 37 H 1.09005 * 110.57911 * 145.03822 * 16 15 14 38 38 H 1.08994 * 110.90551 * 77.63436 * 17 16 15 39 39 H 1.09001 * 110.90340 * 201.22796 * 17 16 15 40 40 H 1.08996 * 110.48989 * 158.22689 * 18 17 16 41 41 H 1.09002 * 110.49484 * 280.75164 * 18 17 16 42 42 H 1.09004 * 110.61873 * 78.53517 * 22 21 19 43 43 H 1.09004 * 110.61619 * 201.36560 * 22 21 19 44 44 H 1.08998 * 110.91215 * 217.92425 * 23 15 14 45 45 H 1.09002 * 110.90583 * 341.53164 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0018 13 7 1.7401 -7.4222 0.0018 14 6 2.6646 -8.5638 0.0018 15 6 1.8646 -9.8679 0.0025 16 6 0.9727 -9.9969 1.2536 17 6 1.8211 -10.8611 2.2227 18 6 2.4324 -11.9168 1.2665 19 6 2.7834 -11.1154 -0.0063 20 1 3.8368 -10.8353 -0.0055 21 8 2.4326 -11.8878 -1.1675 22 6 1.8732 -10.9753 -2.1352 23 6 0.9845 -10.0085 -1.2607 24 1 -0.4850 -0.8401 0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8896 27 1 2.8726 -3.6046 -0.8877 28 1 2.8713 -3.6039 0.8922 29 1 0.8528 -5.0447 0.8905 30 1 0.8546 -5.0449 -0.8894 31 1 3.1019 -6.0921 -0.8878 32 1 3.1007 -6.0923 0.8922 33 1 1.1035 -7.4721 0.7830 34 1 3.2926 -8.5228 -0.8882 35 1 3.2925 -8.5227 0.8918 36 1 0.7764 -9.0161 1.6870 37 1 0.0386 -10.5020 1.0079 38 1 2.6022 -10.2643 2.6936 39 1 1.1902 -11.3360 2.9740 40 1 3.3310 -12.3523 1.7033 41 1 1.7032 -12.6950 1.0409 42 1 2.6635 -10.4222 -2.6429 43 1 1.2572 -11.5115 -2.8571 44 1 0.0247 -10.4642 -1.0175 45 1 0.8432 -9.0426 -1.7457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687468028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:25 Heat of formation + Delta-G solvation = -81.970360 kcal Electronic energy + Delta-G solvation = -20436.754595 eV Core-core repulsion = 17452.329508 eV Total energy + Delta-G solvation = -2984.425087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72300 -36.96281 -35.68809 -34.34098 -32.66227 -31.43576 -28.84358 -27.99754 -27.06146 -24.85363 -23.57954 -22.28237 -21.62178 -20.86229 -20.33149 -19.20421 -16.92747 -16.57267 -16.38074 -15.85063 -15.43472 -14.72896 -14.59814 -14.21786 -14.01704 -13.78178 -13.70808 -12.92315 -12.85365 -12.79277 -12.24246 -12.12178 -12.02578 -11.57391 -11.31046 -11.17229 -11.09719 -11.02544 -10.88996 -10.85849 -10.64905 -10.55250 -10.52711 -10.11441 -9.83339 -9.77039 -9.62281 -8.48714 -8.46623 -8.29024 -6.33292 -4.01800 3.44731 3.49118 3.53993 3.62359 3.88788 4.11863 4.42768 4.50582 4.56964 4.72836 4.83112 4.88741 4.96926 5.00261 5.10002 5.22027 5.30289 5.33957 5.39210 5.42833 5.44878 5.53378 5.57245 5.58220 5.66262 5.79986 5.80828 5.86376 5.92432 5.96908 6.02729 6.04558 6.14614 6.38914 6.68542 6.70011 6.81494 6.91141 7.08708 7.31978 7.46250 7.59536 8.26772 8.50868 8.92660 9.70806 11.07616 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042344 B = 0.002668 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.092953 B =10491.600082 C =10654.477315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.074 2.926 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.601 4.601 8 H 0.048 0.952 9 C 0.008 3.992 10 C -0.102 4.102 11 C -0.116 4.116 12 C 0.060 3.940 13 N -0.688 5.688 14 C 0.077 3.923 15 C -0.091 4.091 16 C -0.113 4.113 17 C -0.126 4.126 18 C -0.125 4.125 19 C 0.081 3.919 20 H 0.075 0.925 21 O -0.376 6.376 22 C 0.044 3.956 23 C -0.137 4.137 24 H 0.269 0.731 25 H 0.005 0.995 26 H 0.007 0.993 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.026 0.974 33 H 0.339 0.661 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 -24.901 1.154 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.903 3.097 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.029 4.029 10 C -0.140 4.140 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.320 5.320 14 C -0.052 4.052 15 C -0.092 4.092 16 C -0.150 4.150 17 C -0.163 4.163 18 C -0.162 4.162 19 C 0.022 3.978 20 H 0.093 0.907 21 O -0.295 6.295 22 C -0.033 4.033 23 C -0.174 4.174 24 H 0.080 0.920 25 H 0.023 0.977 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.158 0.842 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.821 -23.489 0.446 23.802 hybrid contribution 0.565 -1.399 0.929 1.771 sum 4.386 -24.888 1.375 25.309 Atomic orbital electron populations 1.70718 1.06892 1.30643 1.47016 1.25863 0.96598 1.02767 0.93882 0.83483 0.74436 0.74878 0.76950 1.21571 1.21337 1.21361 1.22150 0.94317 0.92174 1.55343 0.93356 1.19225 0.94666 0.93206 0.95841 1.21456 0.98804 0.93431 1.00318 1.21644 0.97922 0.93947 1.01876 1.22055 0.96164 0.88444 1.00206 1.60515 1.19807 1.01536 1.50156 1.21792 0.93824 0.89024 1.00572 1.22475 0.95651 0.94333 0.96710 1.22536 0.97930 1.00134 0.94431 1.22611 0.99239 0.97064 0.97418 1.22587 1.01351 0.98209 0.94070 1.23467 0.97771 0.90167 0.86351 0.90699 1.88822 1.82173 1.32180 1.26303 1.24081 0.95874 0.91332 0.92007 1.23655 0.97753 1.01021 0.95008 0.92049 0.97672 0.97515 0.93270 0.93516 0.92852 0.91691 0.91226 0.95546 0.84172 0.90905 0.95057 0.91342 0.90820 0.91341 0.91091 0.91284 0.90385 0.92233 0.89283 0.90697 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.69 13.65 55.43 0.76 -27.93 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 3 Si 1.07 25.86 29.90 -169.99 -5.08 20.78 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.60 -17.62 9.11 -34.44 -0.31 -17.93 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 9 C 0.01 0.20 4.28 -27.88 -0.12 0.08 16 10 C -0.10 -2.13 5.15 -26.73 -0.14 -2.26 16 11 C -0.12 -1.95 5.47 -26.73 -0.15 -2.10 16 12 C 0.06 0.82 5.69 -3.82 -0.02 0.80 16 13 N -0.69 -8.02 5.88 -113.77 -0.67 -8.69 16 14 C 0.08 0.78 4.72 -3.83 -0.02 0.76 16 15 C -0.09 -0.82 0.62 -152.03 -0.09 -0.92 16 16 C -0.11 -0.94 5.82 -25.00 -0.15 -1.08 16 17 C -0.13 -0.94 6.92 -24.56 -0.17 -1.11 16 18 C -0.12 -1.01 6.54 -24.91 -0.16 -1.17 16 19 C 0.08 0.75 3.95 -24.95 -0.10 0.65 16 20 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 21 O -0.38 -4.10 11.09 -35.23 -0.39 -4.49 16 22 C 0.04 0.40 7.80 39.77 0.31 0.71 16 23 C -0.14 -1.25 6.39 -23.28 -0.15 -1.40 16 24 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 25 H 0.01 0.14 8.01 -51.93 -0.42 -0.28 16 26 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.34 3.77 6.79 -39.29 -0.27 3.50 16 34 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.58 6.18 -51.93 -0.32 0.26 16 37 H 0.07 0.61 7.25 -51.93 -0.38 0.23 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.66 7.25 -51.93 -0.38 0.29 16 45 H 0.10 0.99 7.48 -51.93 -0.39 0.60 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -31.23 347.45 -9.89 -41.13 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.38 Total: -1.32 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -1.36 Total: -24.71 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.09 Total: -36.62 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.39 Total: -4.49 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.08 Total: 20.78 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.23 -9.89 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.844 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds