Wall clock time and date at job start Mon Mar 30 2020 06:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46847 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46812 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46932 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47023 * 179.97438 * 12 11 10 14 14 C 1.46901 * 110.99825 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47300 * 179.97438 * 14 13 12 16 16 C 1.54191 * 111.96692 * 298.98854 * 15 14 13 17 17 C 1.55104 * 103.71924 * 263.59701 * 16 15 14 18 18 C 1.54999 * 102.10888 * 319.42555 * 17 16 15 19 19 C 1.54452 * 104.15918 * 39.55588 * 18 17 16 20 20 H 1.09001 * 110.63129 * 97.55985 * 19 18 17 21 21 O 1.43809 * 109.34763 * 221.35398 * 19 18 17 22 22 C 1.44290 * 107.24232 * 140.41416 * 21 19 18 23 23 C 1.54597 * 112.01205 * 61.83468 * 15 14 13 24 24 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 26 26 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 27 27 H 1.09000 * 109.46719 * 299.99848 * 10 9 7 28 28 H 1.08994 * 109.47402 * 59.99779 * 10 9 7 29 29 H 1.09000 * 109.47115 * 299.99312 * 11 10 9 30 30 H 1.08994 * 109.47558 * 59.99580 * 11 10 9 31 31 H 1.09004 * 109.47105 * 299.99750 * 12 11 10 32 32 H 1.08998 * 109.47779 * 59.99298 * 12 11 10 33 33 H 1.00894 * 111.00034 * 303.94641 * 13 12 11 34 34 H 1.09007 * 109.47351 * 300.00097 * 14 13 12 35 35 H 1.08999 * 109.47003 * 60.00045 * 14 13 12 36 36 H 1.09002 * 110.58082 * 22.15884 * 16 15 14 37 37 H 1.09005 * 110.57911 * 145.03822 * 16 15 14 38 38 H 1.08994 * 110.90551 * 77.63436 * 17 16 15 39 39 H 1.09001 * 110.90340 * 201.22796 * 17 16 15 40 40 H 1.08996 * 110.48989 * 158.22689 * 18 17 16 41 41 H 1.09002 * 110.49484 * 280.75164 * 18 17 16 42 42 H 1.09004 * 110.61873 * 78.53517 * 22 21 19 43 43 H 1.09004 * 110.61619 * 201.36560 * 22 21 19 44 44 H 1.08998 * 110.91215 * 217.92425 * 23 15 14 45 45 H 1.09002 * 110.90583 * 341.53164 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0018 13 7 1.7401 -7.4222 0.0018 14 6 2.6646 -8.5638 0.0018 15 6 1.8646 -9.8679 0.0025 16 6 0.9727 -9.9969 1.2536 17 6 1.8211 -10.8611 2.2227 18 6 2.4324 -11.9168 1.2665 19 6 2.7834 -11.1154 -0.0063 20 1 3.8368 -10.8353 -0.0055 21 8 2.4326 -11.8878 -1.1675 22 6 1.8732 -10.9753 -2.1352 23 6 0.9845 -10.0085 -1.2607 24 1 -0.4850 -0.8401 0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8896 27 1 2.8726 -3.6046 -0.8877 28 1 2.8713 -3.6039 0.8922 29 1 0.8528 -5.0447 0.8905 30 1 0.8546 -5.0449 -0.8894 31 1 3.1019 -6.0921 -0.8878 32 1 3.1007 -6.0923 0.8922 33 1 1.1035 -7.4721 0.7830 34 1 3.2926 -8.5228 -0.8882 35 1 3.2925 -8.5227 0.8918 36 1 0.7764 -9.0161 1.6870 37 1 0.0386 -10.5020 1.0079 38 1 2.6022 -10.2643 2.6936 39 1 1.1902 -11.3360 2.9740 40 1 3.3310 -12.3523 1.7033 41 1 1.7032 -12.6950 1.0409 42 1 2.6635 -10.4222 -2.6429 43 1 1.2572 -11.5115 -2.8571 44 1 0.0247 -10.4642 -1.0175 45 1 0.8432 -9.0426 -1.7457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687468028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:24 Heat of formation + Delta-G solvation = -100.550122 kcal Electronic energy + Delta-G solvation = -20437.560274 eV Core-core repulsion = 17452.329508 eV Total energy + Delta-G solvation = -2985.230766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44858 -38.05226 -36.74884 -35.87772 -34.20910 -32.56835 -30.11295 -28.87633 -28.05687 -26.24191 -24.96387 -23.33502 -22.84734 -21.97778 -21.53365 -19.96160 -18.89143 -17.63153 -17.13453 -16.85764 -16.23219 -15.86868 -15.75025 -15.63737 -15.14463 -14.95583 -14.76799 -14.47211 -14.16124 -13.98077 -13.51584 -13.12675 -12.86245 -12.70133 -12.68655 -12.43930 -12.29391 -12.18549 -11.94390 -11.89510 -11.77006 -11.70621 -11.60945 -11.49733 -11.37897 -11.28850 -10.62167 -10.56863 -10.55884 -9.41121 -8.70706 -6.41040 1.51136 1.61233 1.77701 2.55495 2.83684 3.00418 3.14398 3.42972 3.65469 3.79853 3.98007 4.04816 4.11106 4.16115 4.21396 4.26518 4.32457 4.42597 4.43904 4.52596 4.54523 4.64927 4.70245 4.72216 4.78706 4.84547 4.87883 4.94999 5.03896 5.05759 5.10153 5.12557 5.19370 5.20400 5.23403 5.26013 5.39027 5.47281 5.56133 5.97012 5.99510 6.01502 6.18316 6.40202 6.57244 7.41650 8.70282 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042344 B = 0.002668 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.092953 B =10491.600082 C =10654.477315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.043 4.043 3 Si 1.124 2.876 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.621 4.621 8 H 0.050 0.950 9 C 0.007 3.993 10 C -0.091 4.091 11 C -0.105 4.105 12 C 0.072 3.928 13 N -0.689 5.689 14 C 0.081 3.919 15 C -0.087 4.087 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.122 4.122 19 C 0.076 3.924 20 H 0.077 0.923 21 O -0.394 6.394 22 C 0.041 3.959 23 C -0.134 4.134 24 H 0.255 0.745 25 H -0.013 1.013 26 H -0.014 1.014 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.344 0.656 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.192 -25.448 1.589 26.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.239 4.239 3 Si 0.945 3.055 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.659 4.659 8 H 0.068 0.932 9 C -0.031 4.031 10 C -0.130 4.130 11 C -0.143 4.143 12 C -0.057 4.057 13 N -0.322 5.322 14 C -0.048 4.048 15 C -0.088 4.088 16 C -0.151 4.151 17 C -0.158 4.158 18 C -0.160 4.160 19 C 0.018 3.982 20 H 0.094 0.906 21 O -0.313 6.313 22 C -0.035 4.035 23 C -0.172 4.172 24 H 0.065 0.935 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.163 0.837 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.957 -24.072 0.883 24.593 hybrid contribution 0.188 -1.276 0.776 1.505 sum 5.144 -25.348 1.659 25.918 Atomic orbital electron populations 1.70861 1.07965 1.29893 1.48999 1.27518 0.96664 1.07060 0.92708 0.82862 0.74231 0.70812 0.77643 1.19386 1.20311 1.20261 1.22604 0.94717 0.93654 1.54901 0.93182 1.19202 0.95210 0.94721 0.93919 1.21290 0.97742 0.93466 1.00452 1.21457 0.98066 0.93189 1.01544 1.21817 0.95197 0.88152 1.00551 1.60445 1.20032 1.01138 1.50564 1.21775 0.93633 0.88714 1.00671 1.22419 0.95604 0.93720 0.97047 1.22541 0.97965 1.00308 0.94266 1.22596 0.99243 0.96712 0.97274 1.22581 1.01666 0.98116 0.93647 1.23575 0.97878 0.90290 0.86462 0.90557 1.88805 1.82385 1.33098 1.27030 1.24170 0.96032 0.91309 0.91973 1.23608 0.97976 1.00518 0.95080 0.93516 0.99463 0.99524 0.93184 0.93194 0.92759 0.92498 0.91160 0.94957 0.83668 0.91208 0.94492 0.91420 0.90766 0.91047 0.90075 0.90388 0.90915 0.92093 0.88173 0.90429 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.64 13.65 21.45 0.29 -59.35 16 2 C -0.04 -2.53 5.46 84.65 0.46 -2.07 16 3 Si 1.12 51.19 29.90 68.60 2.05 53.24 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.62 -36.53 9.11 25.60 0.23 -36.30 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.01 0.35 4.28 29.85 0.13 0.48 16 10 C -0.09 -3.78 5.15 30.60 0.16 -3.62 16 11 C -0.10 -3.44 5.47 30.59 0.17 -3.27 16 12 C 0.07 1.86 5.69 86.30 0.49 2.35 16 13 N -0.69 -15.00 5.88 -513.87 -3.02 -18.03 16 14 C 0.08 1.50 4.72 86.30 0.41 1.91 16 15 C -0.09 -1.45 0.62 -50.57 -0.03 -1.48 16 16 C -0.11 -1.69 5.82 31.72 0.18 -1.51 16 17 C -0.12 -1.57 6.92 32.00 0.22 -1.34 16 18 C -0.12 -1.78 6.54 31.77 0.21 -1.57 16 19 C 0.08 1.31 3.95 31.75 0.13 1.44 16 20 H 0.08 1.28 7.86 -2.39 -0.02 1.26 16 21 O -0.39 -8.16 11.09 -148.98 -1.65 -9.81 16 22 C 0.04 0.71 7.80 73.67 0.57 1.29 16 23 C -0.13 -2.32 6.39 32.83 0.21 -2.11 16 24 H 0.26 16.42 7.22 -92.71 -0.67 15.75 16 25 H -0.01 -0.73 8.01 -2.39 -0.02 -0.75 16 26 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.34 7.07 6.79 -89.70 -0.61 6.46 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 1.03 6.18 -2.39 -0.01 1.01 16 37 H 0.07 1.11 7.25 -2.38 -0.02 1.09 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.14 8.04 -2.39 -0.02 1.12 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.08 1.29 7.25 -2.39 -0.02 1.27 16 45 H 0.09 1.70 7.48 -2.39 -0.02 1.68 16 Total: -1.00 -66.43 347.45 1.63 -64.80 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.42 Total: 14.98 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 3.54 Total: -45.83 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -2.73 Total: -77.38 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.65 Total: -9.81 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Total: -66.43 1.63 -64.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687468028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.752 kcal (2) G-P(sol) polarization free energy of solvation -66.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds