Wall clock time and date at job start Mon Mar 30 2020 07:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 110.99947 * 2 1 4 4 C 1.53004 * 109.47026 * 293.95047 * 3 2 1 5 5 H 1.08995 * 110.54852 * 57.12571 * 4 3 2 6 6 C 1.54998 * 110.61595 * 180.02562 * 4 3 2 7 7 C 1.54810 * 102.09077 * 155.52202 * 6 4 3 8 8 C 1.54099 * 104.18835 * 339.12365 * 7 6 4 9 9 C 1.53008 * 109.88113 * 117.39122 * 8 7 6 10 10 C 1.53003 * 109.87818 * 238.38944 * 8 7 6 11 11 O 1.43739 * 107.29514 * 357.96774 * 8 7 6 12 12 C 1.46899 * 110.99591 * 123.95099 * 2 1 3 13 13 C 1.53002 * 109.47401 * 77.84204 * 12 2 1 14 14 C 1.50710 * 115.54715 * 301.05579 * 13 12 2 15 15 H 1.07996 * 120.00026 * 126.52004 * 14 13 12 16 16 C 1.37877 * 119.99614 * 306.51450 * 14 13 12 17 17 N 1.31516 * 120.00382 * 3.98345 * 16 14 13 18 18 Si 1.86796 * 119.99878 * 183.98464 * 16 14 13 19 19 H 1.48498 * 109.46973 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47186 * 120.00067 * 18 16 14 21 21 H 1.48502 * 109.47287 * 239.99982 * 18 16 14 22 22 C 1.52995 * 117.50160 * 155.38249 * 13 12 2 23 23 C 1.52996 * 117.50155 * 86.71910 * 13 12 2 24 24 H 1.09000 * 109.46679 * 53.99819 * 1 2 3 25 25 H 1.08993 * 109.47577 * 174.00001 * 1 2 3 26 26 H 1.09000 * 109.46952 * 294.00151 * 1 2 3 27 27 H 1.09002 * 109.47446 * 53.95351 * 3 2 1 28 28 H 1.09004 * 109.46839 * 173.95363 * 3 2 1 29 29 H 1.08991 * 110.91150 * 273.72244 * 6 4 3 30 30 H 1.09004 * 110.90522 * 37.29775 * 6 4 3 31 31 H 1.09008 * 110.48396 * 97.79455 * 7 6 4 32 32 H 1.08989 * 110.49316 * 220.31310 * 7 6 4 33 33 H 1.08995 * 109.47033 * 60.00023 * 9 8 7 34 34 H 1.09001 * 109.46949 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.46828 * 299.99675 * 9 8 7 36 36 H 1.09002 * 109.47086 * 60.00181 * 10 8 7 37 37 H 1.09002 * 109.47136 * 179.97438 * 10 8 7 38 38 H 1.08992 * 109.47440 * 299.99859 * 10 8 7 39 39 H 1.08999 * 109.47052 * 197.83968 * 12 2 1 40 40 H 1.08997 * 109.47468 * 317.83854 * 12 2 1 41 41 H 0.97000 * 120.00355 * 184.99783 * 17 16 14 42 42 H 1.08997 * 117.49718 * 359.97438 * 22 13 12 43 43 H 1.08997 * 117.49726 * 145.02297 * 22 13 12 44 44 H 1.09000 * 117.50411 * 214.98759 * 23 13 12 45 45 H 1.09005 * 117.49626 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 1 0.5520 2.0489 -1.4688 6 6 2.1757 3.5084 -1.3469 7 6 2.2924 3.7811 -2.8663 8 6 2.3408 2.3770 -3.4994 9 6 1.1296 2.1758 -4.4124 10 6 3.6316 2.2134 -4.3045 11 8 2.3069 1.4225 -2.4252 12 6 1.9954 -0.7659 1.1376 13 6 1.8945 -2.2624 0.8354 14 6 0.5056 -2.7771 0.5573 15 1 0.3067 -3.3326 -0.3473 16 6 -0.5109 -2.5390 1.4578 17 7 -0.2878 -1.7966 2.5203 18 14 -2.2051 -3.2708 1.1688 19 1 -2.1950 -4.0611 -0.0883 20 1 -2.5626 -4.1558 2.3064 21 1 -3.2043 -2.1777 1.0590 22 6 2.8615 -3.1972 1.5647 23 6 3.0532 -2.9090 0.0736 24 1 -0.3633 0.6041 -0.8314 25 1 -0.3634 -1.0219 -0.1074 26 1 -0.3633 0.4180 0.9388 27 1 1.5611 1.9274 0.8309 28 1 3.0798 1.3443 0.1083 29 1 1.4712 4.1973 -0.8811 30 1 3.1514 3.5675 -0.8646 31 1 1.4214 4.3307 -3.2233 32 1 3.2066 4.3324 -3.0859 33 1 1.1412 2.9270 -5.2021 34 1 1.1702 1.1810 -4.8561 35 1 0.2143 2.2760 -3.8291 36 1 4.4899 2.3402 -3.6446 37 1 3.6592 1.2184 -4.7487 38 1 3.6656 2.9649 -5.0932 39 1 3.0389 -0.4985 1.3041 40 1 1.4145 -0.5357 2.0307 41 1 -0.9806 -1.6884 3.1905 42 1 3.5699 -2.7461 2.2595 43 1 2.4933 -4.1846 1.8430 44 1 2.8110 -3.7069 -0.6284 45 1 3.8871 -2.2681 -0.2126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691936543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:09 Heat of formation + Delta-G solvation = -16.322464 kcal Electronic energy + Delta-G solvation = -21946.845024 eV Core-core repulsion = 18965.266644 eV Total energy + Delta-G solvation = -2981.578380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.71154 -37.32443 -35.01576 -32.75609 -32.13993 -31.71258 -27.83994 -27.30667 -26.26455 -25.55439 -23.75466 -21.52556 -20.96408 -20.21294 -19.68741 -18.81541 -16.40175 -15.99656 -15.21097 -14.82188 -14.63160 -14.34800 -13.98895 -13.69545 -13.45985 -13.22940 -13.01540 -12.60535 -12.27182 -12.07102 -11.90878 -11.60517 -11.45607 -11.35937 -11.29357 -11.15281 -10.80181 -10.66101 -10.60259 -10.49399 -10.37296 -10.24592 -10.11514 -9.98421 -9.31002 -9.20357 -8.69826 -8.42951 -7.93416 -7.02895 -5.95950 -3.97201 3.27453 3.36997 3.41658 4.03457 4.40371 4.64963 4.73389 4.89330 4.96406 5.17969 5.23002 5.29450 5.46682 5.59102 5.62606 5.65015 5.70633 5.78111 5.84644 5.86587 5.96033 5.99857 6.06040 6.18726 6.24780 6.29931 6.37559 6.45995 6.46542 6.62430 6.78038 6.82511 6.91337 6.96134 7.10954 7.35683 7.40816 7.50716 7.58300 7.64350 7.97464 8.37183 8.40151 8.58611 8.97245 9.56147 11.04508 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021833 B = 0.005543 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.170998 B = 5050.324684 C = 5404.330773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.514 5.514 3 C 0.060 3.940 4 C 0.086 3.914 5 H 0.067 0.933 6 C -0.152 4.152 7 C -0.145 4.145 8 C 0.091 3.909 9 C -0.161 4.161 10 C -0.140 4.140 11 O -0.338 6.338 12 C 0.095 3.905 13 C 0.063 3.937 14 C -0.467 4.467 15 H 0.060 0.940 16 C 0.069 3.931 17 N -0.883 5.883 18 Si 0.881 3.119 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.198 4.198 23 C -0.198 4.198 24 H 0.027 0.973 25 H 0.114 0.886 26 H 0.014 0.986 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.076 0.924 41 H 0.258 0.742 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 11.361 -8.453 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.237 5.237 3 C -0.069 4.069 4 C 0.028 3.972 5 H 0.085 0.915 6 C -0.191 4.191 7 C -0.183 4.183 8 C 0.051 3.949 9 C -0.218 4.218 10 C -0.197 4.197 11 O -0.257 6.257 12 C -0.032 4.032 13 C 0.062 3.938 14 C -0.505 4.505 15 H 0.078 0.922 16 C -0.133 4.133 17 N -0.521 5.521 18 Si 0.708 3.292 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.237 4.237 23 C -0.235 4.235 24 H 0.046 0.954 25 H 0.132 0.868 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.075 11.038 -8.754 14.666 hybrid contribution -1.251 0.250 0.741 1.476 sum 2.823 11.288 -8.013 14.128 Atomic orbital electron populations 1.22828 0.87350 1.05647 0.96750 1.61794 1.08322 1.09004 1.44617 1.22106 1.00078 0.91545 0.93127 1.23157 0.96338 0.89590 0.88066 0.91517 1.23169 1.02170 0.97676 0.96037 1.23007 1.02430 0.97228 0.95590 1.22063 0.95342 0.88341 0.89203 1.22239 0.98017 1.02260 0.99322 1.21858 0.96301 1.02265 0.99303 1.89109 1.77933 1.36457 1.22202 1.21715 0.95653 0.93311 0.92551 1.18791 0.89663 0.89316 0.95981 1.20516 0.91519 1.32767 1.05676 0.92209 1.24913 0.98215 0.94500 0.95646 1.69897 1.33990 1.37714 1.10507 0.86716 0.84808 0.79253 0.78407 1.19588 1.20995 1.20916 1.22875 1.05498 1.02138 0.93156 1.22760 1.02950 1.04009 0.93802 0.95444 0.86805 0.96734 0.94918 0.91348 0.90737 0.90643 0.91041 0.90836 0.92326 0.91786 0.92448 0.92121 0.91888 0.91967 0.95596 0.90560 0.93149 0.92113 0.90657 0.91047 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 8.18 60.07 0.49 0.98 16 2 N -0.51 -11.45 4.65 -242.92 -1.13 -12.58 16 3 C 0.06 1.11 4.68 -3.82 -0.02 1.10 16 4 C 0.09 1.40 3.17 -25.67 -0.08 1.32 16 5 H 0.07 1.12 6.37 -51.93 -0.33 0.79 16 6 C -0.15 -1.89 6.59 -24.72 -0.16 -2.06 16 7 C -0.14 -1.61 6.27 -25.20 -0.16 -1.77 16 8 C 0.09 1.19 1.19 -90.04 -0.11 1.09 16 9 C -0.16 -1.96 8.61 37.16 0.32 -1.64 16 10 C -0.14 -1.61 8.68 37.16 0.32 -1.29 16 11 O -0.34 -5.92 10.55 -35.23 -0.37 -6.29 16 12 C 0.09 2.27 4.73 -3.82 -0.02 2.26 16 13 C 0.06 1.60 1.85 -155.66 -0.29 1.31 16 14 C -0.47 -12.53 6.65 -34.44 -0.23 -12.76 16 15 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 16 C 0.07 1.81 3.51 -17.82 -0.06 1.75 16 17 N -0.88 -23.84 10.74 55.43 0.60 -23.25 16 18 Si 0.88 20.65 29.48 -169.99 -5.01 15.64 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.20 -4.68 9.95 -26.70 -0.27 -4.95 16 23 C -0.20 -4.59 9.94 -26.70 -0.27 -4.85 16 24 H 0.03 0.56 6.19 -51.93 -0.32 0.24 16 25 H 0.11 2.89 3.97 -51.93 -0.21 2.69 16 26 H 0.01 0.34 7.94 -51.93 -0.41 -0.08 16 27 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.07 1.24 7.81 -51.93 -0.41 0.84 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.91 8.06 -51.93 -0.42 0.50 16 31 H 0.07 0.71 7.70 -51.92 -0.40 0.31 16 32 H 0.07 0.71 7.70 -51.94 -0.40 0.31 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.03 0.59 7.66 -51.93 -0.40 0.19 16 40 H 0.08 2.00 5.88 -51.93 -0.31 1.70 16 41 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 44 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 45 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 343.81 15.07 5.18 5.18 Total: -1.00 -27.92 343.81 -9.47 -37.39 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.21 Total: 3.43 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -0.52 Total: -19.52 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.54 Total: -35.83 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.37 Total: -6.29 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.01 Total: 15.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.92 -9.47 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691936543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.068 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds