Wall clock time and date at job start Mon Mar 30 2020 07:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 110.99947 * 2 1 4 4 C 1.53004 * 109.47026 * 293.95047 * 3 2 1 5 5 H 1.08995 * 110.54852 * 57.12571 * 4 3 2 6 6 C 1.54998 * 110.61595 * 180.02562 * 4 3 2 7 7 C 1.54810 * 102.09077 * 155.52202 * 6 4 3 8 8 C 1.54099 * 104.18835 * 339.12365 * 7 6 4 9 9 C 1.53008 * 109.88113 * 117.39122 * 8 7 6 10 10 C 1.53003 * 109.87818 * 238.38944 * 8 7 6 11 11 O 1.43739 * 107.29514 * 357.96774 * 8 7 6 12 12 C 1.46899 * 110.99591 * 123.95099 * 2 1 3 13 13 C 1.53002 * 109.47401 * 77.84204 * 12 2 1 14 14 C 1.50710 * 115.54715 * 301.05579 * 13 12 2 15 15 H 1.07996 * 120.00026 * 126.52004 * 14 13 12 16 16 C 1.37877 * 119.99614 * 306.51450 * 14 13 12 17 17 N 1.31516 * 120.00382 * 3.98345 * 16 14 13 18 18 Si 1.86796 * 119.99878 * 183.98464 * 16 14 13 19 19 H 1.48498 * 109.46973 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47186 * 120.00067 * 18 16 14 21 21 H 1.48502 * 109.47287 * 239.99982 * 18 16 14 22 22 C 1.52995 * 117.50160 * 155.38249 * 13 12 2 23 23 C 1.52996 * 117.50155 * 86.71910 * 13 12 2 24 24 H 1.09000 * 109.46679 * 53.99819 * 1 2 3 25 25 H 1.08993 * 109.47577 * 174.00001 * 1 2 3 26 26 H 1.09000 * 109.46952 * 294.00151 * 1 2 3 27 27 H 1.09002 * 109.47446 * 53.95351 * 3 2 1 28 28 H 1.09004 * 109.46839 * 173.95363 * 3 2 1 29 29 H 1.08991 * 110.91150 * 273.72244 * 6 4 3 30 30 H 1.09004 * 110.90522 * 37.29775 * 6 4 3 31 31 H 1.09008 * 110.48396 * 97.79455 * 7 6 4 32 32 H 1.08989 * 110.49316 * 220.31310 * 7 6 4 33 33 H 1.08995 * 109.47033 * 60.00023 * 9 8 7 34 34 H 1.09001 * 109.46949 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.46828 * 299.99675 * 9 8 7 36 36 H 1.09002 * 109.47086 * 60.00181 * 10 8 7 37 37 H 1.09002 * 109.47136 * 179.97438 * 10 8 7 38 38 H 1.08992 * 109.47440 * 299.99859 * 10 8 7 39 39 H 1.08999 * 109.47052 * 197.83968 * 12 2 1 40 40 H 1.08997 * 109.47468 * 317.83854 * 12 2 1 41 41 H 0.97000 * 120.00355 * 184.99783 * 17 16 14 42 42 H 1.08997 * 117.49718 * 359.97438 * 22 13 12 43 43 H 1.08997 * 117.49726 * 145.02297 * 22 13 12 44 44 H 1.09000 * 117.50411 * 214.98759 * 23 13 12 45 45 H 1.09005 * 117.49626 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 1 0.5520 2.0489 -1.4688 6 6 2.1757 3.5084 -1.3469 7 6 2.2924 3.7811 -2.8663 8 6 2.3408 2.3770 -3.4994 9 6 1.1296 2.1758 -4.4124 10 6 3.6316 2.2134 -4.3045 11 8 2.3069 1.4225 -2.4252 12 6 1.9954 -0.7659 1.1376 13 6 1.8945 -2.2624 0.8354 14 6 0.5056 -2.7771 0.5573 15 1 0.3067 -3.3326 -0.3473 16 6 -0.5109 -2.5390 1.4578 17 7 -0.2878 -1.7966 2.5203 18 14 -2.2051 -3.2708 1.1688 19 1 -2.1950 -4.0611 -0.0883 20 1 -2.5626 -4.1558 2.3064 21 1 -3.2043 -2.1777 1.0590 22 6 2.8615 -3.1972 1.5647 23 6 3.0532 -2.9090 0.0736 24 1 -0.3633 0.6041 -0.8314 25 1 -0.3634 -1.0219 -0.1074 26 1 -0.3633 0.4180 0.9388 27 1 1.5611 1.9274 0.8309 28 1 3.0798 1.3443 0.1083 29 1 1.4712 4.1973 -0.8811 30 1 3.1514 3.5675 -0.8646 31 1 1.4214 4.3307 -3.2233 32 1 3.2066 4.3324 -3.0859 33 1 1.1412 2.9270 -5.2021 34 1 1.1702 1.1810 -4.8561 35 1 0.2143 2.2760 -3.8291 36 1 4.4899 2.3402 -3.6446 37 1 3.6592 1.2184 -4.7487 38 1 3.6656 2.9649 -5.0932 39 1 3.0389 -0.4985 1.3041 40 1 1.4145 -0.5357 2.0307 41 1 -0.9806 -1.6884 3.1905 42 1 3.5699 -2.7461 2.2595 43 1 2.4933 -4.1846 1.8430 44 1 2.8110 -3.7069 -0.6284 45 1 3.8871 -2.2681 -0.2126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691936543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:09 Heat of formation + Delta-G solvation = -31.954625 kcal Electronic energy + Delta-G solvation = -21947.522885 eV Core-core repulsion = 18965.266644 eV Total energy + Delta-G solvation = -2982.256242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84159 -39.13208 -36.69968 -34.23881 -33.81753 -32.84426 -29.21234 -28.26665 -28.09781 -27.50508 -25.12574 -22.96937 -22.71279 -21.57629 -20.81376 -20.75815 -18.00905 -17.54776 -16.69600 -16.35112 -16.07794 -15.83904 -15.67348 -15.19054 -14.78649 -14.54814 -14.30888 -14.18272 -13.59728 -13.34724 -13.26274 -13.08895 -12.96308 -12.92641 -12.58830 -12.49240 -12.38339 -12.28875 -12.17387 -12.08711 -11.94758 -11.73337 -11.47425 -11.40800 -11.18204 -10.67340 -10.46040 -10.33711 -9.88515 -8.82257 -7.97835 -6.05199 1.38938 1.44089 1.53117 2.44290 2.92561 3.10855 3.32100 3.69366 3.75796 3.89317 3.97317 4.09306 4.26415 4.31941 4.33824 4.50596 4.56641 4.60284 4.63276 4.76578 4.78015 4.82486 4.85576 4.90989 4.93538 4.94400 5.00367 5.03224 5.04592 5.10071 5.15513 5.21814 5.28123 5.33663 5.43748 5.45575 5.61420 5.63425 5.68784 5.95445 6.29506 6.50176 6.55851 6.69788 6.92394 7.49957 9.00313 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021833 B = 0.005543 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.170998 B = 5050.324684 C = 5404.330773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.524 5.524 3 C 0.060 3.940 4 C 0.086 3.914 5 H 0.056 0.944 6 C -0.145 4.145 7 C -0.137 4.137 8 C 0.077 3.923 9 C -0.159 4.159 10 C -0.137 4.137 11 O -0.374 6.374 12 C 0.106 3.894 13 C 0.035 3.965 14 C -0.481 4.481 15 H 0.043 0.957 16 C 0.040 3.960 17 N -0.900 5.900 18 Si 0.931 3.069 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.278 1.278 22 C -0.194 4.194 23 C -0.184 4.184 24 H 0.045 0.955 25 H 0.088 0.912 26 H -0.001 1.001 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.051 0.949 41 H 0.258 0.742 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.314 13.062 -9.497 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.247 5.247 3 C -0.068 4.068 4 C 0.029 3.971 5 H 0.074 0.926 6 C -0.183 4.183 7 C -0.174 4.174 8 C 0.038 3.962 9 C -0.216 4.216 10 C -0.195 4.195 11 O -0.294 6.294 12 C -0.022 4.022 13 C 0.034 3.966 14 C -0.519 4.519 15 H 0.061 0.939 16 C -0.160 4.160 17 N -0.538 5.538 18 Si 0.757 3.243 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.204 1.204 22 C -0.233 4.233 23 C -0.221 4.221 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.018 0.982 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.442 12.745 -9.809 16.685 hybrid contribution -1.331 -0.285 1.025 1.704 sum 3.111 12.461 -8.783 15.559 Atomic orbital electron populations 1.22577 0.87934 1.04084 0.96611 1.61764 1.07847 1.11357 1.43744 1.22183 0.99941 0.89654 0.95008 1.23075 0.95823 0.91579 0.86668 0.92604 1.23138 1.02546 0.95166 0.97480 1.22999 1.04241 0.96089 0.94080 1.22394 0.96370 0.88873 0.88579 1.22234 0.97256 1.02359 0.99770 1.21872 0.95350 1.02494 0.99737 1.89067 1.78094 1.38720 1.23554 1.21495 0.95598 0.92990 0.92101 1.18969 0.89625 0.90292 0.97739 1.20556 0.92874 1.33132 1.05308 0.93889 1.25363 1.00625 0.94607 0.95364 1.70002 1.34724 1.38170 1.10936 0.85932 0.81608 0.78636 0.78099 1.19703 1.20754 1.20399 1.22856 1.05187 1.01464 0.93779 1.22727 1.02290 1.03609 0.93489 0.93657 0.89410 0.98235 0.94465 0.91185 0.89050 0.90245 0.89444 0.88822 0.89466 0.93319 0.93403 0.92395 0.93234 0.89082 0.94791 0.93134 0.93207 0.90764 0.91409 0.91160 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.65 8.18 127.69 1.05 2.69 16 2 N -0.52 -23.43 4.65 -922.45 -4.29 -27.73 16 3 C 0.06 2.20 4.68 86.31 0.40 2.60 16 4 C 0.09 2.70 3.17 31.28 0.10 2.80 16 5 H 0.06 1.84 6.37 -2.39 -0.02 1.82 16 6 C -0.15 -3.23 6.59 31.90 0.21 -3.02 16 7 C -0.14 -2.57 6.27 31.58 0.20 -2.38 16 8 C 0.08 1.88 1.19 -10.42 -0.01 1.86 16 9 C -0.16 -3.59 8.61 71.98 0.62 -2.98 16 10 C -0.14 -2.86 8.68 71.98 0.62 -2.24 16 11 O -0.37 -12.80 10.55 -148.98 -1.57 -14.38 16 12 C 0.11 5.11 4.73 86.30 0.41 5.52 16 13 C 0.03 1.75 1.85 -52.93 -0.10 1.65 16 14 C -0.48 -26.23 6.65 25.60 0.17 -26.06 16 15 H 0.04 2.43 7.82 -2.91 -0.02 2.40 16 16 C 0.04 2.15 3.51 84.65 0.30 2.45 16 17 N -0.90 -49.17 10.74 21.45 0.23 -48.94 16 18 Si 0.93 42.73 29.48 68.60 2.02 44.75 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 C -0.19 -9.14 9.95 30.62 0.30 -8.83 16 23 C -0.18 -8.44 9.94 30.62 0.30 -8.14 16 24 H 0.04 1.87 6.19 -2.39 -0.01 1.85 16 25 H 0.09 4.54 3.97 -2.39 -0.01 4.53 16 26 H 0.00 -0.04 7.94 -2.39 -0.02 -0.06 16 27 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 28 H 0.07 2.49 7.81 -2.38 -0.02 2.48 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.71 8.06 -2.39 -0.02 1.69 16 31 H 0.09 1.39 7.70 -2.38 -0.02 1.37 16 32 H 0.09 1.42 7.70 -2.39 -0.02 1.40 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.03 1.54 7.66 -2.39 -0.02 1.52 16 40 H 0.05 2.70 5.88 -2.39 -0.01 2.69 16 41 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 42 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 Total: -1.00 -59.91 343.81 1.89 -58.02 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.93 Total: 22.33 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 4.58 Total: -34.07 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -4.06 Total: -76.67 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -1.57 Total: -14.38 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.02 Total: 44.75 kcal Total: -59.91 1.89 -58.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691936543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.066 kcal (2) G-P(sol) polarization free energy of solvation -59.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds