Wall clock time and date at job start Mon Mar 30 2020 07:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99965 * 2 1 4 4 C 1.53005 * 109.47040 * 71.81217 * 3 2 1 5 5 H 1.09001 * 110.54902 * 298.62440 * 4 3 2 6 6 C 1.54992 * 110.61753 * 175.57466 * 4 3 2 7 7 C 1.54808 * 102.09345 * 204.47280 * 6 4 3 8 8 C 1.54105 * 104.18551 * 20.88078 * 7 6 4 9 9 C 1.52995 * 109.87910 * 242.60423 * 8 7 6 10 10 C 1.53002 * 109.87590 * 121.45291 * 8 7 6 11 11 O 1.43738 * 107.29220 * 2.03011 * 8 7 6 12 12 C 1.46903 * 110.99853 * 236.04382 * 2 1 3 13 13 C 1.52997 * 109.47381 * 285.07333 * 12 2 1 14 14 C 1.50703 * 115.55087 * 150.08138 * 13 12 2 15 15 H 1.07995 * 119.99460 * 123.84933 * 14 13 12 16 16 C 1.37871 * 119.99717 * 303.85597 * 14 13 12 17 17 N 1.31515 * 119.99851 * 159.89419 * 16 14 13 18 18 Si 1.86801 * 120.00184 * 339.88838 * 16 14 13 19 19 H 1.48504 * 109.47136 * 86.36769 * 18 16 14 20 20 H 1.48510 * 109.46931 * 206.36291 * 18 16 14 21 21 H 1.48495 * 109.47063 * 326.36348 * 18 16 14 22 22 C 1.53000 * 117.49732 * 4.37476 * 13 12 2 23 23 C 1.52997 * 117.49858 * 295.75393 * 13 12 2 24 24 H 1.08998 * 109.46809 * 64.44407 * 1 2 3 25 25 H 1.09004 * 109.46880 * 184.44420 * 1 2 3 26 26 H 1.08998 * 109.46998 * 304.44479 * 1 2 3 27 27 H 1.09000 * 109.47194 * 311.81520 * 3 2 1 28 28 H 1.09001 * 109.47119 * 191.81249 * 3 2 1 29 29 H 1.08997 * 110.90801 * 322.67357 * 6 4 3 30 30 H 1.09004 * 110.90594 * 86.27545 * 6 4 3 31 31 H 1.08996 * 110.49153 * 262.20215 * 7 6 4 32 32 H 1.09004 * 110.60097 * 139.61144 * 7 6 4 33 33 H 1.08998 * 109.47532 * 179.28565 * 9 8 7 34 34 H 1.09008 * 109.47406 * 299.28584 * 9 8 7 35 35 H 1.08995 * 109.47182 * 59.28299 * 9 8 7 36 36 H 1.08999 * 109.47148 * 300.71583 * 10 8 7 37 37 H 1.08998 * 109.47071 * 60.71411 * 10 8 7 38 38 H 1.08996 * 109.46851 * 180.71290 * 10 8 7 39 39 H 1.08996 * 109.46799 * 45.07856 * 12 2 1 40 40 H 1.09002 * 109.46629 * 165.07081 * 12 2 1 41 41 H 0.97001 * 120.00114 * 179.97438 * 17 16 14 42 42 H 1.08998 * 117.49827 * 0.02562 * 22 13 12 43 43 H 1.09000 * 117.49614 * 145.02326 * 22 13 12 44 44 H 1.09000 * 117.50103 * 214.97577 * 23 13 12 45 45 H 1.09010 * 117.50095 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7579 2.0089 1.3705 5 1 0.6912 2.0612 1.5884 6 6 2.4016 3.4173 1.4363 7 6 2.6259 3.6007 2.9570 8 6 2.6145 2.1647 3.5163 9 6 1.4481 1.9957 4.4919 10 6 3.9375 1.8728 4.2271 11 8 2.4518 1.2730 2.4007 12 6 1.9955 -0.7660 -1.1376 13 6 1.8281 -2.2624 -0.8661 14 6 1.6391 -3.1272 -2.0858 15 1 2.3086 -3.9542 -2.2702 16 6 0.6116 -2.8623 -2.9661 17 7 0.6628 -3.3267 -4.1954 18 14 -0.8533 -1.8438 -2.4127 19 1 -0.5518 -0.4015 -2.5980 20 1 -2.0438 -2.2085 -3.2221 21 1 -1.1289 -2.1117 -0.9784 22 6 1.0907 -2.6705 0.4109 23 6 2.6057 -2.8585 0.3090 24 1 -0.3633 0.4433 -0.9271 25 1 -0.3633 -1.0246 0.0796 26 1 -0.3633 0.5813 0.8475 27 1 1.4860 1.9562 -0.7659 28 1 3.0648 1.3501 -0.2104 29 1 3.3492 3.4374 0.8981 30 1 1.7200 4.1749 1.0495 31 1 1.8175 4.1868 3.3940 32 1 3.5876 4.0769 3.1481 33 1 1.4387 0.9748 4.8736 34 1 1.5646 2.6928 5.3218 35 1 0.5101 2.1992 3.9755 36 1 4.7616 1.9893 3.5232 37 1 4.0662 2.5693 5.0556 38 1 3.9273 0.8519 4.6088 39 1 1.4482 -0.4972 -2.0410 40 1 3.0527 -0.5371 -1.2716 41 1 -0.0602 -3.1407 -4.8147 42 1 0.7246 -1.8729 1.0573 43 1 0.4687 -3.5646 0.3690 44 1 2.9803 -3.8763 0.2001 45 1 3.2370 -2.1847 0.8884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691936546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:12 Heat of formation + Delta-G solvation = -4.362191 kcal Electronic energy + Delta-G solvation = -22026.960090 eV Core-core repulsion = 19045.900346 eV Total energy + Delta-G solvation = -2981.059744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94285 -38.01463 -35.10273 -32.93401 -32.12230 -31.92610 -28.16545 -27.50252 -27.39378 -25.68543 -24.00906 -21.77114 -21.13020 -20.66391 -19.95333 -18.68193 -16.63152 -16.28154 -15.45886 -15.11833 -15.03063 -14.80690 -14.31513 -13.91068 -13.77703 -13.47790 -13.05562 -12.76432 -12.57201 -12.38211 -12.19706 -12.08132 -11.77718 -11.59724 -11.52713 -11.40751 -11.10562 -10.94834 -10.76048 -10.72054 -10.58216 -10.47583 -10.02429 -9.57903 -9.48045 -9.21702 -9.00964 -8.53591 -8.10790 -7.58229 -6.12093 -4.02492 3.24661 3.38982 3.43341 3.80959 4.34494 4.44173 4.49709 4.69273 4.74249 5.00357 5.04355 5.07008 5.20699 5.35405 5.44536 5.44613 5.50375 5.52034 5.63456 5.66653 5.75766 5.79539 5.83031 5.85012 5.96903 6.02243 6.11003 6.11569 6.18475 6.22001 6.31698 6.41327 6.50444 6.66313 6.86087 6.86884 7.09209 7.17183 7.31749 7.49508 7.62413 7.70845 7.93207 8.60486 8.97998 9.56449 10.99281 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.005411 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.612882 B = 5173.033438 C = 5468.949151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.525 5.525 3 C 0.059 3.941 4 C 0.086 3.914 5 H 0.064 0.936 6 C -0.151 4.151 7 C -0.145 4.145 8 C 0.091 3.909 9 C -0.161 4.161 10 C -0.141 4.141 11 O -0.337 6.337 12 C 0.085 3.915 13 C 0.005 3.995 14 C -0.487 4.487 15 H 0.074 0.926 16 C 0.079 3.921 17 N -0.889 5.889 18 Si 0.869 3.131 19 H -0.277 1.277 20 H -0.300 1.300 21 H -0.249 1.249 22 C -0.198 4.198 23 C -0.175 4.175 24 H 0.023 0.977 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.065 0.935 41 H 0.263 0.737 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 15.427 14.551 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.249 5.249 3 C -0.070 4.070 4 C 0.028 3.972 5 H 0.082 0.918 6 C -0.190 4.190 7 C -0.183 4.183 8 C 0.051 3.949 9 C -0.218 4.218 10 C -0.198 4.198 11 O -0.256 6.256 12 C -0.042 4.042 13 C 0.003 3.997 14 C -0.525 4.525 15 H 0.092 0.908 16 C -0.124 4.124 17 N -0.525 5.525 18 Si 0.698 3.302 19 H -0.204 1.204 20 H -0.227 1.227 21 H -0.174 1.174 22 C -0.236 4.236 23 C -0.212 4.212 24 H 0.041 0.959 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.063 14.945 14.773 21.115 hybrid contribution -1.265 1.160 -0.582 1.812 sum 0.798 16.105 14.191 21.481 Atomic orbital electron populations 1.23237 0.88756 1.04331 0.99273 1.61999 1.06996 1.11117 1.44767 1.22165 1.00938 0.90317 0.93576 1.23101 0.95810 0.89180 0.89126 0.91799 1.23158 1.01903 0.97650 0.96251 1.23015 1.02601 0.97017 0.95642 1.22086 0.95352 0.88981 0.88485 1.22236 0.98164 1.02520 0.98921 1.21862 0.95779 1.02321 0.99829 1.89113 1.77266 1.35060 1.24168 1.22009 0.98618 0.93798 0.89769 1.19310 1.00759 0.90739 0.88853 1.20362 1.14249 1.14110 1.03753 0.90778 1.24930 0.98308 0.95269 0.93859 1.70035 1.32276 1.46593 1.03631 0.87323 0.82807 0.80115 0.79914 1.20373 1.22700 1.17359 1.23220 0.93852 1.01999 1.04512 1.22620 0.94181 1.00187 1.04184 0.95905 0.88453 0.92574 0.94088 0.90315 0.90402 0.90625 0.90970 0.90646 0.91755 0.92162 0.92569 0.92009 0.91871 0.91820 0.94270 0.91694 0.92706 0.89200 0.91098 0.90987 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 6.76 60.07 0.41 0.25 16 2 N -0.53 -10.03 3.67 -242.91 -0.89 -10.92 16 3 C 0.06 0.92 4.74 -3.82 -0.02 0.90 16 4 C 0.09 1.17 3.22 -25.68 -0.08 1.09 16 5 H 0.06 0.87 6.79 -51.93 -0.35 0.52 16 6 C -0.15 -1.59 6.59 -24.73 -0.16 -1.75 16 7 C -0.14 -1.37 6.27 -25.20 -0.16 -1.53 16 8 C 0.09 1.04 1.19 -90.04 -0.11 0.93 16 9 C -0.16 -1.67 8.61 37.15 0.32 -1.35 16 10 C -0.14 -1.43 8.67 37.16 0.32 -1.11 16 11 O -0.34 -5.11 10.48 -35.23 -0.37 -5.48 16 12 C 0.08 1.87 4.68 -3.82 -0.02 1.86 16 13 C 0.00 0.12 1.32 -155.66 -0.21 -0.09 16 14 C -0.49 -13.91 9.35 -34.44 -0.32 -14.24 16 15 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 16 C 0.08 2.28 5.23 -17.82 -0.09 2.19 16 17 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 18 Si 0.87 21.56 22.44 -169.99 -3.81 17.75 16 19 H -0.28 -6.63 5.47 56.52 0.31 -6.33 16 20 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 21 H -0.25 -5.84 4.91 56.52 0.28 -5.56 16 22 C -0.20 -4.47 7.09 -26.73 -0.19 -4.66 16 23 C -0.17 -3.88 9.92 -26.73 -0.27 -4.15 16 24 H 0.02 0.44 5.95 -51.93 -0.31 0.13 16 25 H 0.10 2.02 2.72 -51.93 -0.14 1.88 16 26 H 0.06 0.91 6.60 -51.93 -0.34 0.57 16 27 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 28 H 0.08 1.22 7.69 -51.93 -0.40 0.82 16 29 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.60 7.70 -51.93 -0.40 0.20 16 32 H 0.07 0.63 7.70 -51.93 -0.40 0.23 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.94 5.30 -51.93 -0.28 0.66 16 40 H 0.06 1.37 7.67 -51.93 -0.40 0.98 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 42 H 0.09 1.94 5.29 -51.93 -0.27 1.67 16 43 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 44 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 45 H 0.07 1.59 8.14 -51.92 -0.42 1.17 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -30.46 328.95 -8.05 -38.51 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.13 Total: 3.23 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -0.57 Total: -21.66 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.12 Total: -37.30 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.37 Total: -5.48 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -3.81 Total: 17.75 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.46 -8.05 -38.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691936546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.148 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds