Wall clock time and date at job start Mon Mar 30 2020 07:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99965 * 2 1 4 4 C 1.53005 * 109.47040 * 71.81217 * 3 2 1 5 5 H 1.09001 * 110.54902 * 298.62440 * 4 3 2 6 6 C 1.54992 * 110.61753 * 175.57466 * 4 3 2 7 7 C 1.54808 * 102.09345 * 204.47280 * 6 4 3 8 8 C 1.54105 * 104.18551 * 20.88078 * 7 6 4 9 9 C 1.52995 * 109.87910 * 242.60423 * 8 7 6 10 10 C 1.53002 * 109.87590 * 121.45291 * 8 7 6 11 11 O 1.43738 * 107.29220 * 2.03011 * 8 7 6 12 12 C 1.46903 * 110.99853 * 236.04382 * 2 1 3 13 13 C 1.52997 * 109.47381 * 285.07333 * 12 2 1 14 14 C 1.50703 * 115.55087 * 150.08138 * 13 12 2 15 15 H 1.07995 * 119.99460 * 123.84933 * 14 13 12 16 16 C 1.37871 * 119.99717 * 303.85597 * 14 13 12 17 17 N 1.31515 * 119.99851 * 159.89419 * 16 14 13 18 18 Si 1.86801 * 120.00184 * 339.88838 * 16 14 13 19 19 H 1.48504 * 109.47136 * 86.36769 * 18 16 14 20 20 H 1.48510 * 109.46931 * 206.36291 * 18 16 14 21 21 H 1.48495 * 109.47063 * 326.36348 * 18 16 14 22 22 C 1.53000 * 117.49732 * 4.37476 * 13 12 2 23 23 C 1.52997 * 117.49858 * 295.75393 * 13 12 2 24 24 H 1.08998 * 109.46809 * 64.44407 * 1 2 3 25 25 H 1.09004 * 109.46880 * 184.44420 * 1 2 3 26 26 H 1.08998 * 109.46998 * 304.44479 * 1 2 3 27 27 H 1.09000 * 109.47194 * 311.81520 * 3 2 1 28 28 H 1.09001 * 109.47119 * 191.81249 * 3 2 1 29 29 H 1.08997 * 110.90801 * 322.67357 * 6 4 3 30 30 H 1.09004 * 110.90594 * 86.27545 * 6 4 3 31 31 H 1.08996 * 110.49153 * 262.20215 * 7 6 4 32 32 H 1.09004 * 110.60097 * 139.61144 * 7 6 4 33 33 H 1.08998 * 109.47532 * 179.28565 * 9 8 7 34 34 H 1.09008 * 109.47406 * 299.28584 * 9 8 7 35 35 H 1.08995 * 109.47182 * 59.28299 * 9 8 7 36 36 H 1.08999 * 109.47148 * 300.71583 * 10 8 7 37 37 H 1.08998 * 109.47071 * 60.71411 * 10 8 7 38 38 H 1.08996 * 109.46851 * 180.71290 * 10 8 7 39 39 H 1.08996 * 109.46799 * 45.07856 * 12 2 1 40 40 H 1.09002 * 109.46629 * 165.07081 * 12 2 1 41 41 H 0.97001 * 120.00114 * 179.97438 * 17 16 14 42 42 H 1.08998 * 117.49827 * 0.02562 * 22 13 12 43 43 H 1.09000 * 117.49614 * 145.02326 * 22 13 12 44 44 H 1.09000 * 117.50103 * 214.97577 * 23 13 12 45 45 H 1.09010 * 117.50095 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7579 2.0089 1.3705 5 1 0.6912 2.0612 1.5884 6 6 2.4016 3.4173 1.4363 7 6 2.6259 3.6007 2.9570 8 6 2.6145 2.1647 3.5163 9 6 1.4481 1.9957 4.4919 10 6 3.9375 1.8728 4.2271 11 8 2.4518 1.2730 2.4007 12 6 1.9955 -0.7660 -1.1376 13 6 1.8281 -2.2624 -0.8661 14 6 1.6391 -3.1272 -2.0858 15 1 2.3086 -3.9542 -2.2702 16 6 0.6116 -2.8623 -2.9661 17 7 0.6628 -3.3267 -4.1954 18 14 -0.8533 -1.8438 -2.4127 19 1 -0.5518 -0.4015 -2.5980 20 1 -2.0438 -2.2085 -3.2221 21 1 -1.1289 -2.1117 -0.9784 22 6 1.0907 -2.6705 0.4109 23 6 2.6057 -2.8585 0.3090 24 1 -0.3633 0.4433 -0.9271 25 1 -0.3633 -1.0246 0.0796 26 1 -0.3633 0.5813 0.8475 27 1 1.4860 1.9562 -0.7659 28 1 3.0648 1.3501 -0.2104 29 1 3.3492 3.4374 0.8981 30 1 1.7200 4.1749 1.0495 31 1 1.8175 4.1868 3.3940 32 1 3.5876 4.0769 3.1481 33 1 1.4387 0.9748 4.8736 34 1 1.5646 2.6928 5.3218 35 1 0.5101 2.1992 3.9755 36 1 4.7616 1.9893 3.5232 37 1 4.0662 2.5693 5.0556 38 1 3.9273 0.8519 4.6088 39 1 1.4482 -0.4972 -2.0410 40 1 3.0527 -0.5371 -1.2716 41 1 -0.0602 -3.1407 -4.8147 42 1 0.7246 -1.8729 1.0573 43 1 0.4687 -3.5646 0.3690 44 1 2.9803 -3.8763 0.2001 45 1 3.2370 -2.1847 0.8884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691936546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:11 Heat of formation + Delta-G solvation = -24.154651 kcal Electronic energy + Delta-G solvation = -22027.818355 eV Core-core repulsion = 19045.900346 eV Total energy + Delta-G solvation = -2981.918009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.90286 -39.64208 -36.66899 -34.33412 -33.86549 -32.87448 -29.35253 -29.08885 -28.23566 -27.64383 -25.26017 -22.98216 -22.91449 -21.77573 -20.82916 -20.66742 -18.30069 -17.63191 -17.04090 -16.43132 -16.30212 -16.10655 -15.88303 -15.28032 -14.72627 -14.64750 -14.56813 -14.29332 -13.98603 -13.81712 -13.30020 -13.12917 -13.03481 -12.92847 -12.73186 -12.60857 -12.47683 -12.33899 -12.29531 -12.07040 -11.81597 -11.52191 -11.47928 -11.42409 -11.06195 -10.97446 -10.53337 -10.41044 -10.11865 -9.11563 -8.35797 -6.31103 1.25561 1.35504 1.47392 2.33926 2.76181 2.92480 3.15184 3.47737 3.68548 3.82097 3.96972 4.04895 4.18617 4.25400 4.29170 4.37124 4.39672 4.47340 4.54755 4.57862 4.59579 4.65480 4.77012 4.81758 4.83691 4.89030 4.94173 4.95472 5.02299 5.04123 5.04956 5.11743 5.15468 5.25353 5.27292 5.34156 5.45172 5.50094 5.66643 5.71656 6.08866 6.15910 6.34669 6.39877 6.73305 7.31122 8.79211 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.005411 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.612882 B = 5173.033438 C = 5468.949151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.528 5.528 3 C 0.056 3.944 4 C 0.086 3.914 5 H 0.066 0.934 6 C -0.146 4.146 7 C -0.138 4.138 8 C 0.080 3.920 9 C -0.158 4.158 10 C -0.139 4.139 11 O -0.371 6.371 12 C 0.096 3.904 13 C -0.016 4.016 14 C -0.498 4.498 15 H 0.029 0.971 16 C 0.029 3.971 17 N -0.937 5.937 18 Si 0.930 3.070 19 H -0.261 1.261 20 H -0.305 1.305 21 H -0.227 1.227 22 C -0.181 4.181 23 C -0.163 4.163 24 H 0.018 0.982 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.018 0.982 40 H 0.067 0.933 41 H 0.266 0.734 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 18.428 16.990 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 N -0.251 5.251 3 C -0.071 4.071 4 C 0.028 3.972 5 H 0.083 0.917 6 C -0.184 4.184 7 C -0.176 4.176 8 C 0.041 3.959 9 C -0.216 4.216 10 C -0.197 4.197 11 O -0.290 6.290 12 C -0.031 4.031 13 C -0.017 4.017 14 C -0.536 4.536 15 H 0.047 0.953 16 C -0.170 4.170 17 N -0.576 5.576 18 Si 0.755 3.245 19 H -0.187 1.187 20 H -0.232 1.232 21 H -0.150 1.150 22 C -0.218 4.218 23 C -0.200 4.200 24 H 0.036 0.964 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.396 17.959 17.244 24.937 hybrid contribution -0.943 0.161 -1.333 1.641 sum 0.453 18.121 15.912 24.119 Atomic orbital electron populations 1.23197 0.88440 1.03546 1.00332 1.61939 1.07304 1.13107 1.42782 1.22281 1.00730 0.88521 0.95616 1.23081 0.96094 0.90468 0.87515 0.91653 1.23139 1.02007 0.96062 0.97216 1.23006 1.04038 0.95901 0.94647 1.22352 0.96050 0.89679 0.87857 1.22220 0.97651 1.02314 0.99381 1.21880 0.95167 1.02237 1.00380 1.89075 1.77554 1.36929 1.25482 1.21698 0.98672 0.92687 0.90069 1.19225 1.03041 0.91678 0.87789 1.20534 1.13553 1.13723 1.05771 0.95314 1.25729 1.00943 0.96804 0.93537 1.70157 1.33405 1.48966 1.05061 0.86413 0.78425 0.79193 0.80439 1.18659 1.23241 1.15010 1.23150 0.93816 1.01869 1.02978 1.22622 0.94463 1.00066 1.02865 0.96364 0.90346 0.89674 0.93124 0.90534 0.90483 0.88821 0.89368 0.89311 0.93176 0.89884 0.92847 0.92574 0.89416 0.93162 0.96424 0.91486 0.92534 0.87466 0.91980 0.91553 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.26 6.76 127.69 0.86 0.60 16 2 N -0.53 -18.98 3.67 -922.43 -3.38 -22.36 16 3 C 0.06 1.63 4.74 86.31 0.41 2.04 16 4 C 0.09 2.09 3.22 31.28 0.10 2.19 16 5 H 0.07 1.55 6.79 -2.39 -0.02 1.53 16 6 C -0.15 -2.54 6.59 31.89 0.21 -2.33 16 7 C -0.14 -2.07 6.27 31.59 0.20 -1.88 16 8 C 0.08 1.59 1.19 -10.42 -0.01 1.58 16 9 C -0.16 -2.82 8.61 71.98 0.62 -2.20 16 10 C -0.14 -2.50 8.67 71.98 0.62 -1.88 16 11 O -0.37 -10.35 10.48 -148.98 -1.56 -11.91 16 12 C 0.10 4.17 4.68 86.30 0.40 4.57 16 13 C -0.02 -0.77 1.32 -52.93 -0.07 -0.84 16 14 C -0.50 -29.37 9.35 25.60 0.24 -29.13 16 15 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 16 C 0.03 1.69 5.23 84.65 0.44 2.13 16 17 N -0.94 -59.23 13.96 21.44 0.30 -58.93 16 18 Si 0.93 44.68 22.44 68.60 1.54 46.21 16 19 H -0.26 -11.82 5.47 99.48 0.54 -11.27 16 20 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 21 H -0.23 -10.00 4.91 99.48 0.49 -9.52 16 22 C -0.18 -7.91 7.09 30.59 0.22 -7.69 16 23 C -0.16 -7.14 9.92 30.59 0.30 -6.84 16 24 H 0.02 0.64 5.95 -2.39 -0.01 0.63 16 25 H 0.08 3.01 2.72 -2.39 -0.01 3.00 16 26 H 0.08 2.44 6.60 -2.39 -0.02 2.43 16 27 H 0.05 1.38 8.05 -2.39 -0.02 1.36 16 28 H 0.08 2.23 7.69 -2.39 -0.02 2.21 16 29 H 0.08 1.35 8.05 -2.39 -0.02 1.34 16 30 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.09 1.06 7.70 -2.39 -0.02 1.04 16 32 H 0.09 1.11 7.70 -2.39 -0.02 1.09 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.02 0.83 5.30 -2.39 -0.01 0.82 16 40 H 0.07 2.81 7.67 -2.39 -0.02 2.79 16 41 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.11 4.36 5.29 -2.39 -0.01 4.34 16 43 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.09 3.71 8.14 -2.38 -0.02 3.69 16 Total: -1.00 -67.34 328.95 2.00 -65.34 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.56 Total: 21.32 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 4.55 Total: -39.68 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -3.08 Total: -81.29 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.56 Total: -11.91 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.54 Total: 46.21 kcal Total: -67.34 2.00 -65.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691936546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.186 kcal (2) G-P(sol) polarization free energy of solvation -67.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds