Wall clock time and date at job start Mon Mar 30 2020 07:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 113.18458 * 2 1 4 4 C 1.55650 * 114.06867 * 132.61925 * 2 1 3 5 5 H 1.09007 * 114.06393 * 323.80561 * 4 2 1 6 6 O 1.42899 * 114.07137 * 191.43364 * 4 2 1 7 7 C 1.50454 * 84.23186 * 77.61635 * 4 2 1 8 8 H 1.09002 * 113.00543 * 282.94129 * 7 4 2 9 9 C 1.51675 * 124.51108 * 140.41839 * 7 4 2 10 10 C 1.54160 * 105.70626 * 202.90433 * 9 7 4 11 11 C 1.52356 * 112.35683 * 53.83014 * 10 9 7 12 12 N 1.48192 * 112.68043 * 307.95682 * 11 10 9 13 13 C 1.46894 * 111.00195 * 179.58398 * 12 11 10 14 14 C 1.53001 * 109.47068 * 293.95521 * 13 12 11 15 15 C 1.53004 * 109.47153 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46920 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00323 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99628 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99876 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46950 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46782 * 120.00149 * 20 18 16 23 23 H 1.48493 * 109.47524 * 240.00228 * 20 18 16 24 24 C 1.45022 * 107.08022 * 58.52447 * 12 11 10 25 25 H 1.08996 * 111.45475 * 54.31836 * 24 12 11 26 26 H 1.09002 * 109.47153 * 69.66679 * 1 2 3 27 27 H 1.09001 * 109.46832 * 309.66870 * 1 2 3 28 28 H 1.09004 * 109.47261 * 189.66851 * 1 2 3 29 29 H 1.08996 * 109.47008 * 50.33026 * 3 2 1 30 30 H 1.08996 * 109.47125 * 170.33399 * 3 2 1 31 31 H 1.09003 * 109.47022 * 290.32866 * 3 2 1 32 32 H 0.96706 * 114.00197 * 179.97438 * 6 4 2 33 33 H 1.09003 * 110.19921 * 321.95356 * 9 7 4 34 34 H 1.09000 * 110.19486 * 83.72918 * 9 7 4 35 35 H 1.08998 * 108.90903 * 174.56852 * 10 9 7 36 36 H 1.09006 * 108.90979 * 293.18322 * 10 9 7 37 37 H 1.08997 * 108.84367 * 68.78449 * 11 10 9 38 38 H 1.09007 * 108.84395 * 187.24306 * 11 10 9 39 39 H 1.09004 * 109.47388 * 53.95670 * 13 12 11 40 40 H 1.09003 * 109.47092 * 173.95345 * 13 12 11 41 41 H 1.08996 * 109.47211 * 299.99956 * 14 13 12 42 42 H 1.09003 * 109.47308 * 59.99956 * 14 13 12 43 43 H 1.08996 * 109.47197 * 300.00174 * 15 14 13 44 44 H 1.09003 * 109.46879 * 59.99903 * 15 14 13 45 45 H 0.96999 * 119.99592 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1323 1.4064 0.0000 4 6 2.1648 -0.9623 1.0458 5 1 1.6126 -1.0264 1.9835 6 8 3.5701 -0.7792 1.2287 7 6 1.8100 -2.0334 0.0505 8 1 0.7507 -2.2903 0.0606 9 6 2.6894 -3.2239 -0.2809 10 6 2.2501 -3.6897 -1.6832 11 6 2.2830 -2.5607 -2.7057 12 7 1.5398 -1.3603 -2.2555 13 6 1.6036 -0.2931 -3.2629 14 6 3.0462 0.1996 -3.3932 15 6 3.1128 1.3107 -4.4430 16 6 4.5336 1.7965 -4.5709 17 1 5.3114 1.3564 -3.9645 18 6 4.8407 2.8020 -5.4629 19 7 3.8937 3.3375 -6.2017 20 14 6.6018 3.4046 -5.6210 21 1 7.4705 2.6456 -4.6858 22 1 7.0732 3.1959 -7.0136 23 1 6.6618 4.8508 -5.2896 24 6 2.1425 -0.9286 -1.0091 25 1 3.2164 -0.7769 -1.1171 26 1 -0.3633 0.3571 -0.9636 27 1 -0.3633 0.6560 0.7911 28 1 -0.3634 -1.0131 0.1726 29 1 1.6723 1.9987 0.7910 30 1 3.2066 1.3416 0.1725 31 1 1.9472 1.8810 -0.9637 32 1 3.9634 -1.3773 1.8790 33 1 3.7377 -2.9251 -0.2948 34 1 2.5354 -4.0199 0.4476 35 1 2.9157 -4.4864 -2.0154 36 1 1.2344 -4.0807 -1.6234 37 1 3.3208 -2.2834 -2.8906 38 1 1.8429 -2.9165 -3.6373 39 1 1.2634 -0.6795 -4.2237 40 1 0.9633 0.5342 -2.9568 41 1 3.3863 0.5861 -2.4325 42 1 3.6865 -0.6277 -3.6993 43 1 2.7728 0.9239 -5.4036 44 1 2.4724 2.1382 -4.1373 45 1 4.1098 4.0452 -6.8290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693135466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:09 Heat of formation + Delta-G solvation = -21.546000 kcal Electronic energy + Delta-G solvation = -22173.693330 eV Core-core repulsion = 19191.888440 eV Total energy + Delta-G solvation = -2981.804890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43413 -37.07799 -34.80513 -34.46557 -32.87117 -30.53923 -29.74414 -27.28250 -26.68199 -25.60137 -23.91645 -22.60332 -21.09988 -20.32823 -19.63947 -18.28317 -16.89438 -16.31067 -15.32757 -15.13219 -14.80200 -14.56979 -14.38269 -14.04624 -13.93771 -13.26197 -13.03188 -12.46019 -12.40419 -12.20350 -12.18206 -12.05011 -11.89052 -11.74287 -11.29849 -11.08018 -10.99957 -10.86419 -10.75411 -10.65901 -10.58724 -10.46793 -9.92178 -9.56944 -9.51947 -9.37182 -9.15115 -9.11151 -8.31104 -7.81448 -5.96077 -3.98017 3.32753 3.40041 3.44829 3.88936 4.20651 4.39740 4.49392 4.70372 4.73837 5.07068 5.12635 5.24094 5.33220 5.39388 5.42100 5.48326 5.61198 5.66803 5.75737 5.84391 5.88301 5.92319 5.98469 6.03899 6.06578 6.12823 6.15611 6.21255 6.27120 6.31800 6.39776 6.51859 6.56633 6.66692 6.75679 6.92268 7.14939 7.39246 7.57820 7.63316 7.72102 7.87349 8.04281 8.48325 9.09207 9.65840 11.15068 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021444 B = 0.005179 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.412758 B = 5405.226742 C = 5647.095875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.051 4.051 3 C -0.138 4.138 4 C 0.099 3.901 5 H 0.066 0.934 6 O -0.541 6.541 7 C -0.161 4.161 8 H 0.105 0.895 9 C -0.101 4.101 10 C -0.110 4.110 11 C 0.045 3.955 12 N -0.505 5.505 13 C 0.046 3.954 14 C -0.143 4.143 15 C 0.026 3.974 16 C -0.516 4.516 17 H 0.053 0.947 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.054 3.946 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.376 0.624 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.013 0.987 44 H 0.015 0.985 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 -12.352 15.099 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.051 4.051 3 C -0.195 4.195 4 C 0.039 3.961 5 H 0.084 0.916 6 O -0.345 6.345 7 C -0.180 4.180 8 H 0.122 0.878 9 C -0.138 4.138 10 C -0.148 4.148 11 C -0.083 4.083 12 N -0.227 5.227 13 C -0.082 4.082 14 C -0.182 4.182 15 C -0.012 4.012 16 C -0.555 4.555 17 H 0.071 0.929 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.055 4.055 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.223 0.777 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.806 -11.902 14.553 19.994 hybrid contribution 1.955 0.211 -0.109 1.969 sum -4.851 -11.691 14.444 19.205 Atomic orbital electron populations 1.21553 0.92038 1.01733 1.02319 1.21640 0.95522 0.94457 0.93506 1.21677 1.01459 0.94528 1.01820 1.22252 0.82284 0.95929 0.95668 0.91627 1.86483 1.20700 1.62363 1.64983 1.23485 1.01021 0.94857 0.98654 0.87750 1.21295 0.99451 0.96869 0.96230 1.21517 1.01421 0.97340 0.94535 1.22163 0.97412 0.91041 0.97642 1.63493 1.50746 1.05154 1.03350 1.22351 0.97872 0.93367 0.94584 1.22216 0.94936 0.99946 1.01092 1.19009 0.96796 0.92383 0.92980 1.21299 0.94211 1.18693 1.21288 0.92906 1.25019 0.97035 0.96597 0.95800 1.69976 1.32090 1.26606 1.24895 0.86582 0.85277 0.78637 0.77810 1.19802 1.21037 1.20989 1.23006 0.97736 0.95750 0.89043 0.90431 0.91233 0.92965 0.92064 0.93187 0.91515 0.91885 0.77715 0.91687 0.92507 0.91981 0.91952 0.94212 0.91103 0.91638 0.91149 0.92824 0.93716 0.96831 0.96697 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.00 37.16 0.33 -1.07 16 2 C -0.05 -0.68 1.45 -157.79 -0.23 -0.90 16 3 C -0.14 -2.06 9.00 37.16 0.33 -1.72 16 4 C 0.10 1.13 4.88 -29.62 -0.14 0.98 16 5 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 6 O -0.54 -6.44 11.37 -35.23 -0.40 -6.84 16 7 C -0.16 -1.89 3.11 -93.89 -0.29 -2.18 16 8 H 0.10 1.22 6.08 -51.93 -0.32 0.90 16 9 C -0.10 -1.11 6.00 -26.80 -0.16 -1.27 16 10 C -0.11 -1.27 5.92 -26.45 -0.16 -1.43 16 11 C 0.05 0.65 5.08 -3.44 -0.02 0.63 16 12 N -0.50 -7.79 4.99 -230.41 -1.15 -8.94 16 13 C 0.05 0.83 5.45 -3.83 -0.02 0.81 16 14 C -0.14 -3.08 4.30 -26.73 -0.12 -3.20 16 15 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 16 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 20 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 24 C 0.05 0.79 0.78 -71.17 -0.06 0.74 16 25 H 0.08 1.39 5.89 -51.93 -0.31 1.08 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.66 6.06 -51.93 -0.31 0.34 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.09 7.19 -51.93 -0.37 0.71 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.38 2.77 9.12 45.56 0.42 3.19 16 33 H 0.06 0.78 7.88 -51.93 -0.41 0.37 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.64 6.34 -51.93 -0.33 0.31 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.05 1.18 6.28 -51.93 -0.33 0.86 16 42 H 0.04 0.97 6.52 -51.93 -0.34 0.64 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -31.50 338.24 -9.14 -40.64 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.33 Total: 1.54 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -1.07 Total: -21.94 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.41 Total: -35.74 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.40 Total: -6.84 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.50 -9.14 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693135466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.096 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds