Wall clock time and date at job start Mon Mar 30 2020 07:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 113.18458 * 2 1 4 4 C 1.55650 * 114.06867 * 132.61925 * 2 1 3 5 5 H 1.09007 * 114.06393 * 323.80561 * 4 2 1 6 6 O 1.42899 * 114.07137 * 191.43364 * 4 2 1 7 7 C 1.50454 * 84.23186 * 77.61635 * 4 2 1 8 8 H 1.09002 * 113.00543 * 282.94129 * 7 4 2 9 9 C 1.51675 * 124.51108 * 140.41839 * 7 4 2 10 10 C 1.54160 * 105.70626 * 202.90433 * 9 7 4 11 11 C 1.52356 * 112.35683 * 53.83014 * 10 9 7 12 12 N 1.48192 * 112.68043 * 307.95682 * 11 10 9 13 13 C 1.46894 * 111.00195 * 179.58398 * 12 11 10 14 14 C 1.53001 * 109.47068 * 293.95521 * 13 12 11 15 15 C 1.53004 * 109.47153 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46920 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00323 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99628 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99876 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46950 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46782 * 120.00149 * 20 18 16 23 23 H 1.48493 * 109.47524 * 240.00228 * 20 18 16 24 24 C 1.45022 * 107.08022 * 58.52447 * 12 11 10 25 25 H 1.08996 * 111.45475 * 54.31836 * 24 12 11 26 26 H 1.09002 * 109.47153 * 69.66679 * 1 2 3 27 27 H 1.09001 * 109.46832 * 309.66870 * 1 2 3 28 28 H 1.09004 * 109.47261 * 189.66851 * 1 2 3 29 29 H 1.08996 * 109.47008 * 50.33026 * 3 2 1 30 30 H 1.08996 * 109.47125 * 170.33399 * 3 2 1 31 31 H 1.09003 * 109.47022 * 290.32866 * 3 2 1 32 32 H 0.96706 * 114.00197 * 179.97438 * 6 4 2 33 33 H 1.09003 * 110.19921 * 321.95356 * 9 7 4 34 34 H 1.09000 * 110.19486 * 83.72918 * 9 7 4 35 35 H 1.08998 * 108.90903 * 174.56852 * 10 9 7 36 36 H 1.09006 * 108.90979 * 293.18322 * 10 9 7 37 37 H 1.08997 * 108.84367 * 68.78449 * 11 10 9 38 38 H 1.09007 * 108.84395 * 187.24306 * 11 10 9 39 39 H 1.09004 * 109.47388 * 53.95670 * 13 12 11 40 40 H 1.09003 * 109.47092 * 173.95345 * 13 12 11 41 41 H 1.08996 * 109.47211 * 299.99956 * 14 13 12 42 42 H 1.09003 * 109.47308 * 59.99956 * 14 13 12 43 43 H 1.08996 * 109.47197 * 300.00174 * 15 14 13 44 44 H 1.09003 * 109.46879 * 59.99903 * 15 14 13 45 45 H 0.96999 * 119.99592 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1323 1.4064 0.0000 4 6 2.1648 -0.9623 1.0458 5 1 1.6126 -1.0264 1.9835 6 8 3.5701 -0.7792 1.2287 7 6 1.8100 -2.0334 0.0505 8 1 0.7507 -2.2903 0.0606 9 6 2.6894 -3.2239 -0.2809 10 6 2.2501 -3.6897 -1.6832 11 6 2.2830 -2.5607 -2.7057 12 7 1.5398 -1.3603 -2.2555 13 6 1.6036 -0.2931 -3.2629 14 6 3.0462 0.1996 -3.3932 15 6 3.1128 1.3107 -4.4430 16 6 4.5336 1.7965 -4.5709 17 1 5.3114 1.3564 -3.9645 18 6 4.8407 2.8020 -5.4629 19 7 3.8937 3.3375 -6.2017 20 14 6.6018 3.4046 -5.6210 21 1 7.4705 2.6456 -4.6858 22 1 7.0732 3.1959 -7.0136 23 1 6.6618 4.8508 -5.2896 24 6 2.1425 -0.9286 -1.0091 25 1 3.2164 -0.7769 -1.1171 26 1 -0.3633 0.3571 -0.9636 27 1 -0.3633 0.6560 0.7911 28 1 -0.3634 -1.0131 0.1726 29 1 1.6723 1.9987 0.7910 30 1 3.2066 1.3416 0.1725 31 1 1.9472 1.8810 -0.9637 32 1 3.9634 -1.3773 1.8790 33 1 3.7377 -2.9251 -0.2948 34 1 2.5354 -4.0199 0.4476 35 1 2.9157 -4.4864 -2.0154 36 1 1.2344 -4.0807 -1.6234 37 1 3.3208 -2.2834 -2.8906 38 1 1.8429 -2.9165 -3.6373 39 1 1.2634 -0.6795 -4.2237 40 1 0.9633 0.5342 -2.9568 41 1 3.3863 0.5861 -2.4325 42 1 3.6865 -0.6277 -3.6993 43 1 2.7728 0.9239 -5.4036 44 1 2.4724 2.1382 -4.1373 45 1 4.1098 4.0452 -6.8290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693135466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:08 Heat of formation + Delta-G solvation = -43.296627 kcal Electronic energy + Delta-G solvation = -22174.636508 eV Core-core repulsion = 19191.888440 eV Total energy + Delta-G solvation = -2982.748068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.48997 -38.30619 -36.12979 -35.69225 -34.70921 -32.35471 -30.82790 -28.42012 -28.28900 -26.86104 -25.44570 -23.95779 -22.77891 -21.53188 -20.80132 -19.38547 -18.54094 -17.87832 -16.70781 -16.44159 -16.35044 -15.81265 -15.51636 -15.49072 -15.27773 -14.58876 -14.34892 -14.10301 -13.74248 -13.56716 -13.43078 -13.21850 -13.11780 -12.93474 -12.85449 -12.69397 -12.52662 -12.45965 -12.24999 -12.00473 -11.90914 -11.65903 -11.39731 -11.35301 -11.28319 -10.89461 -10.60902 -10.50676 -10.20236 -9.22283 -8.24656 -6.36946 1.33813 1.34518 1.47990 2.35811 2.96816 3.06886 3.07822 3.35784 3.68834 3.77274 4.04857 4.09528 4.17092 4.25737 4.28856 4.38189 4.41769 4.53440 4.60496 4.63476 4.67795 4.79239 4.81640 4.88385 4.95466 5.01019 5.04098 5.08295 5.11581 5.13499 5.16883 5.19132 5.23527 5.31644 5.43628 5.46642 5.59696 5.62740 5.66766 5.78809 6.06961 6.19816 6.27425 6.78528 6.97965 7.32193 8.86617 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021444 B = 0.005179 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.412758 B = 5405.226742 C = 5647.095875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.061 4.061 3 C -0.133 4.133 4 C 0.111 3.889 5 H 0.098 0.902 6 O -0.563 6.563 7 C -0.139 4.139 8 H 0.116 0.884 9 C -0.098 4.098 10 C -0.106 4.106 11 C 0.041 3.959 12 N -0.493 5.493 13 C 0.057 3.943 14 C -0.120 4.120 15 C 0.032 3.968 16 C -0.544 4.544 17 H 0.050 0.950 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.964 3.036 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.274 1.274 24 C 0.036 3.964 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.396 0.604 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.014 0.986 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.038 0.962 43 H -0.009 1.009 44 H -0.010 1.010 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 -13.920 17.069 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.062 4.062 3 C -0.190 4.190 4 C 0.051 3.949 5 H 0.116 0.884 6 O -0.371 6.371 7 C -0.158 4.158 8 H 0.134 0.866 9 C -0.136 4.136 10 C -0.143 4.143 11 C -0.087 4.087 12 N -0.215 5.215 13 C -0.071 4.071 14 C -0.159 4.159 15 C -0.005 4.005 16 C -0.582 4.582 17 H 0.068 0.932 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.788 3.212 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.073 4.073 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.246 0.754 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.032 0.968 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.009 0.991 44 H 0.008 0.992 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.863 -13.493 16.543 22.424 hybrid contribution 1.985 0.726 -0.742 2.240 sum -4.878 -12.767 15.800 20.891 Atomic orbital electron populations 1.21511 0.90422 1.03125 1.01968 1.21832 0.96788 0.93311 0.94276 1.21605 1.00522 0.96253 1.00669 1.22191 0.82311 0.94059 0.96346 0.88398 1.86455 1.21238 1.63372 1.66055 1.23483 1.01755 0.94034 0.96520 0.86600 1.21296 0.98420 0.97362 0.96502 1.21501 1.02704 0.96168 0.93947 1.22296 0.95637 0.91537 0.99208 1.63585 1.50723 1.04394 1.02771 1.22132 0.95021 0.94305 0.95668 1.21938 0.97486 0.97841 0.98657 1.18884 0.95354 0.93032 0.93256 1.21652 0.95176 1.19526 1.21851 0.93198 1.25964 1.02022 0.96503 0.95103 1.70096 1.34565 1.27054 1.25356 0.85425 0.79254 0.78281 0.78277 1.19081 1.19856 1.19946 1.23033 0.95794 0.98950 0.89546 0.94072 0.93138 0.91188 0.90361 0.91264 0.93541 0.95004 0.75407 0.93070 0.89497 0.90521 0.90564 0.96764 0.90958 0.91782 0.91734 0.93761 0.94289 0.99078 0.99158 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 9.00 71.98 0.65 -1.79 16 2 C -0.06 -1.59 1.45 -54.31 -0.08 -1.66 16 3 C -0.13 -4.09 9.00 71.98 0.65 -3.45 16 4 C 0.11 2.24 4.88 28.73 0.14 2.38 16 5 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 6 O -0.56 -12.60 11.37 -148.98 -1.69 -14.29 16 7 C -0.14 -2.88 3.11 -12.91 -0.04 -2.92 16 8 H 0.12 2.21 6.08 -2.39 -0.01 2.20 16 9 C -0.10 -1.88 6.00 30.55 0.18 -1.69 16 10 C -0.11 -2.18 5.92 30.77 0.18 -2.00 16 11 C 0.04 1.16 5.08 85.84 0.44 1.60 16 12 N -0.49 -15.25 4.99 -882.88 -4.40 -19.65 16 13 C 0.06 2.16 5.45 86.30 0.47 2.63 16 14 C -0.12 -5.50 4.30 30.60 0.13 -5.37 16 15 C 0.03 1.83 4.97 29.85 0.15 1.98 16 16 C -0.54 -33.07 9.11 25.60 0.23 -32.84 16 17 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 18 C 0.00 0.12 5.46 84.66 0.46 0.58 16 19 N -0.93 -58.56 13.29 21.45 0.28 -58.27 16 20 Si 0.96 46.22 29.54 68.60 2.03 48.25 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 24 C 0.04 1.06 0.78 43.68 0.03 1.09 16 25 H 0.04 1.53 5.89 -2.39 -0.01 1.52 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.41 6.06 -2.38 -0.01 1.40 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.58 7.19 -2.39 -0.02 1.56 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.40 4.94 9.12 -74.05 -0.68 4.27 16 33 H 0.05 1.14 7.88 -2.39 -0.02 1.12 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.01 0.47 6.34 -2.39 -0.02 0.46 16 38 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.06 2.42 8.12 -2.39 -0.02 2.40 16 40 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.04 2.09 6.28 -2.39 -0.02 2.07 16 42 H 0.04 1.80 6.52 -2.39 -0.02 1.78 16 43 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -70.55 338.24 0.09 -70.46 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.28 Total: 14.96 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 3.60 Total: -41.45 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -4.12 Total: -77.92 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.69 Total: -14.29 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -70.55 0.09 -70.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693135466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.163 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds