Wall clock time and date at job start Mon Mar 30 2020 07:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 113.30172 * 2 1 4 4 C 1.55635 * 114.07097 * 132.74957 * 2 1 3 5 5 H 1.09003 * 114.06528 * 36.00057 * 4 2 1 6 6 O 1.42903 * 114.06143 * 263.82755 * 4 2 1 7 7 C 1.50512 * 84.27960 * 149.99802 * 4 2 1 8 8 H 1.09004 * 113.10429 * 77.91230 * 7 4 2 9 9 C 1.51943 * 124.17102 * 220.08011 * 7 4 2 10 10 C 1.54354 * 105.23055 * 157.72070 * 9 7 4 11 11 C 1.52363 * 112.15001 * 305.10704 * 10 9 7 12 12 N 1.47601 * 112.43464 * 52.26811 * 11 10 9 13 13 C 1.46898 * 110.64232 * 180.42416 * 12 11 10 14 14 C 1.52993 * 109.47481 * 289.51974 * 13 12 11 15 15 C 1.53002 * 109.47267 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47179 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00195 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00385 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99657 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00596 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46850 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47103 * 119.99739 * 20 18 16 23 23 H 1.48499 * 109.47465 * 239.99975 * 20 18 16 24 24 C 1.44977 * 107.70781 * 301.91292 * 12 11 10 25 25 H 1.09002 * 111.68484 * 305.82838 * 24 12 11 26 26 H 1.09003 * 109.46559 * 306.76190 * 1 2 3 27 27 H 1.08999 * 109.46960 * 66.75614 * 1 2 3 28 28 H 1.08995 * 109.47082 * 186.75758 * 1 2 3 29 29 H 1.09002 * 109.47449 * 173.23850 * 3 2 1 30 30 H 1.09004 * 109.47362 * 293.24376 * 3 2 1 31 31 H 1.09001 * 109.46880 * 53.23712 * 3 2 1 32 32 H 0.96700 * 114.00311 * 179.97438 * 6 4 2 33 33 H 1.09002 * 110.28547 * 276.64442 * 9 7 4 34 34 H 1.09000 * 110.28636 * 38.64854 * 9 7 4 35 35 H 1.09003 * 108.94959 * 65.79463 * 10 9 7 36 36 H 1.08996 * 108.95037 * 184.50470 * 10 9 7 37 37 H 1.08992 * 108.80189 * 172.90492 * 11 10 9 38 38 H 1.09001 * 108.79218 * 291.25730 * 11 10 9 39 39 H 1.08995 * 109.47286 * 49.52650 * 13 12 11 40 40 H 1.09004 * 109.47021 * 169.51900 * 13 12 11 41 41 H 1.08996 * 109.47726 * 300.00154 * 14 13 12 42 42 H 1.09004 * 109.47054 * 59.99946 * 14 13 12 43 43 H 1.09004 * 109.47372 * 300.00300 * 15 14 13 44 44 H 1.08998 * 109.47097 * 60.00414 * 15 14 13 45 45 H 0.96998 * 119.99895 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1353 1.4052 0.0000 4 6 2.1648 -0.9646 1.0435 5 1 1.6109 -1.8926 1.1856 6 8 2.5305 -0.3342 2.2727 7 6 3.2878 -1.0624 0.0461 8 1 3.9528 -0.1989 0.0646 9 6 4.0212 -2.3501 -0.2897 10 6 4.6347 -2.1149 -1.6864 11 6 3.5871 -1.6984 -2.7113 12 7 2.7766 -0.5525 -2.2545 13 6 1.7746 -0.1909 -3.2660 14 6 2.4729 0.4355 -4.4746 15 6 1.4292 0.8127 -5.5278 16 6 2.1172 1.4292 -6.7185 17 1 3.1914 1.5412 -6.7234 18 6 1.3752 1.8512 -7.8013 19 7 0.0670 1.7162 -7.7948 20 14 2.2278 2.6160 -9.2769 21 1 3.6929 2.6542 -9.0371 22 1 1.9459 1.8034 -10.4875 23 1 1.7227 3.9976 -9.4794 24 6 2.1423 -0.9305 -1.0068 25 1 1.5796 -1.8587 -1.1060 26 1 -0.3632 0.6151 0.8233 27 1 -0.3633 0.4056 -0.9442 28 1 -0.3633 -1.0205 0.1209 29 1 3.2163 1.3353 0.1210 30 1 1.9065 1.8994 -0.9443 31 1 1.7141 1.9822 0.8233 32 1 2.9245 -0.9343 2.9206 33 1 4.8073 -2.5389 0.4414 34 1 3.3228 -3.1866 -0.3172 35 1 5.3898 -1.3321 -1.6141 36 1 5.1111 -3.0355 -2.0233 37 1 4.0914 -1.4254 -3.6381 38 1 2.9299 -2.5459 -2.9060 39 1 1.2366 -1.0851 -3.5804 40 1 1.0714 0.5255 -2.8410 41 1 3.0109 1.3298 -4.1602 42 1 3.1761 -0.2808 -4.8995 43 1 0.8908 -0.0814 -5.8424 44 1 0.7265 1.5293 -5.1026 45 1 -0.4550 2.0128 -8.5567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693135467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:11 Heat of formation + Delta-G solvation = -26.527968 kcal Electronic energy + Delta-G solvation = -21583.986263 eV Core-core repulsion = 18601.965339 eV Total energy + Delta-G solvation = -2982.020924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46866 -37.14622 -35.01828 -34.41280 -32.95209 -30.78906 -29.96446 -27.45708 -26.76090 -25.77767 -23.47252 -22.73931 -21.09377 -20.14675 -19.75697 -18.58329 -17.33931 -16.27622 -15.48527 -15.23267 -14.88217 -14.56340 -14.36737 -14.04255 -13.91636 -13.42035 -13.38766 -12.69850 -12.61922 -12.39272 -12.07528 -12.00062 -11.89149 -11.65159 -11.52099 -11.16507 -11.03442 -10.86354 -10.76896 -10.73372 -10.53752 -10.51087 -10.17510 -9.72257 -9.60481 -9.52268 -9.19041 -8.94021 -8.31267 -8.10054 -5.96479 -3.98180 3.33245 3.40575 3.45221 3.81182 4.18679 4.25765 4.49110 4.50341 4.69001 4.73211 4.96913 5.13351 5.21694 5.30359 5.36964 5.39436 5.44619 5.51260 5.65185 5.65647 5.77610 5.82899 5.85948 5.89111 5.97849 6.05644 6.07182 6.11853 6.16970 6.22173 6.31610 6.35608 6.47817 6.58318 6.73760 6.87136 7.16796 7.36327 7.47391 7.56551 7.73017 7.88181 8.04531 8.48225 9.09360 9.65698 11.15046 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.004135 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.183466 B = 6769.517517 C = 7324.046418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.112 4.112 4 C 0.094 3.906 5 H 0.081 0.919 6 O -0.554 6.554 7 C -0.149 4.149 8 H 0.112 0.888 9 C -0.106 4.106 10 C -0.114 4.114 11 C 0.049 3.951 12 N -0.497 5.497 13 C 0.050 3.950 14 C -0.103 4.103 15 C 0.021 3.979 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.041 3.959 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.372 0.628 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -8.537 19.242 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.043 4.043 3 C -0.169 4.169 4 C 0.034 3.966 5 H 0.098 0.902 6 O -0.358 6.358 7 C -0.167 4.167 8 H 0.130 0.870 9 C -0.144 4.144 10 C -0.151 4.151 11 C -0.079 4.079 12 N -0.220 5.220 13 C -0.077 4.077 14 C -0.141 4.141 15 C -0.016 4.016 16 C -0.554 4.554 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.069 4.069 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.219 0.781 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.112 -7.546 18.875 20.961 hybrid contribution -0.027 -0.924 -0.929 1.311 sum 5.086 -8.470 17.946 20.486 Atomic orbital electron populations 1.21783 0.93975 1.01555 1.02434 1.21568 0.94833 0.95743 0.92177 1.21387 1.00752 0.93142 1.01595 1.23202 0.95446 0.95415 0.82534 0.90153 1.86538 1.83282 1.39490 1.26501 1.23555 0.96692 0.99609 0.96876 0.87049 1.21546 0.99454 0.96606 0.96764 1.21597 0.98281 1.01067 0.94191 1.22116 0.95681 0.91588 0.98487 1.62898 1.21949 1.34602 1.02573 1.22359 0.93531 0.98957 0.92887 1.21615 0.99304 0.99250 0.93906 1.19077 0.93723 0.96356 0.92457 1.21296 0.93513 1.39417 1.01219 0.92667 1.25028 0.94820 0.96096 0.98589 1.69981 1.04962 1.47917 1.30794 0.86557 0.79827 0.78971 0.82783 1.19729 1.21091 1.21024 1.22627 0.96446 0.97189 0.90592 0.92622 0.92218 0.91781 0.92894 0.91849 0.91792 0.92849 0.78129 0.92065 0.92307 0.91412 0.91824 0.89888 0.95385 0.95463 0.91217 0.92668 0.93645 0.96944 0.96659 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.24 37.16 0.34 -1.29 16 2 C -0.04 -0.52 1.44 -157.66 -0.23 -0.75 16 3 C -0.11 -1.47 8.58 37.16 0.32 -1.15 16 4 C 0.09 0.97 4.45 -30.21 -0.13 0.84 16 5 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 6 O -0.55 -5.62 13.19 -35.23 -0.46 -6.08 16 7 C -0.15 -1.66 2.99 -93.85 -0.28 -1.94 16 8 H 0.11 1.43 6.12 -51.93 -0.32 1.11 16 9 C -0.11 -1.05 6.19 -26.56 -0.16 -1.21 16 10 C -0.11 -1.25 5.91 -26.35 -0.16 -1.41 16 11 C 0.05 0.67 5.09 -3.76 -0.02 0.66 16 12 N -0.50 -7.51 4.67 -232.11 -1.08 -8.59 16 13 C 0.05 0.89 4.90 -3.83 -0.02 0.87 16 14 C -0.10 -2.18 5.17 -26.73 -0.14 -2.32 16 15 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.04 0.53 1.71 -72.12 -0.12 0.41 16 25 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 28 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.06 0.85 6.04 -51.93 -0.31 0.53 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.37 2.15 9.12 45.56 0.42 2.56 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.23 6.57 -51.93 -0.34 0.89 16 38 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 39 H 0.03 0.50 8.02 -51.93 -0.42 0.08 16 40 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.04 0.95 6.67 -51.93 -0.35 0.60 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -31.11 345.37 -9.37 -40.47 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.59 Total: -0.78 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -1.15 Total: -20.57 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.35 Total: -35.22 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.46 Total: -6.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.11 -9.37 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693135467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.947 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds