Wall clock time and date at job start Mon Mar 30 2020 07:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 113.30172 * 2 1 4 4 C 1.55635 * 114.07097 * 132.74957 * 2 1 3 5 5 H 1.09003 * 114.06528 * 36.00057 * 4 2 1 6 6 O 1.42903 * 114.06143 * 263.82755 * 4 2 1 7 7 C 1.50512 * 84.27960 * 149.99802 * 4 2 1 8 8 H 1.09004 * 113.10429 * 77.91230 * 7 4 2 9 9 C 1.51943 * 124.17102 * 220.08011 * 7 4 2 10 10 C 1.54354 * 105.23055 * 157.72070 * 9 7 4 11 11 C 1.52363 * 112.15001 * 305.10704 * 10 9 7 12 12 N 1.47601 * 112.43464 * 52.26811 * 11 10 9 13 13 C 1.46898 * 110.64232 * 180.42416 * 12 11 10 14 14 C 1.52993 * 109.47481 * 289.51974 * 13 12 11 15 15 C 1.53002 * 109.47267 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47179 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00195 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00385 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99657 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00596 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46850 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47103 * 119.99739 * 20 18 16 23 23 H 1.48499 * 109.47465 * 239.99975 * 20 18 16 24 24 C 1.44977 * 107.70781 * 301.91292 * 12 11 10 25 25 H 1.09002 * 111.68484 * 305.82838 * 24 12 11 26 26 H 1.09003 * 109.46559 * 306.76190 * 1 2 3 27 27 H 1.08999 * 109.46960 * 66.75614 * 1 2 3 28 28 H 1.08995 * 109.47082 * 186.75758 * 1 2 3 29 29 H 1.09002 * 109.47449 * 173.23850 * 3 2 1 30 30 H 1.09004 * 109.47362 * 293.24376 * 3 2 1 31 31 H 1.09001 * 109.46880 * 53.23712 * 3 2 1 32 32 H 0.96700 * 114.00311 * 179.97438 * 6 4 2 33 33 H 1.09002 * 110.28547 * 276.64442 * 9 7 4 34 34 H 1.09000 * 110.28636 * 38.64854 * 9 7 4 35 35 H 1.09003 * 108.94959 * 65.79463 * 10 9 7 36 36 H 1.08996 * 108.95037 * 184.50470 * 10 9 7 37 37 H 1.08992 * 108.80189 * 172.90492 * 11 10 9 38 38 H 1.09001 * 108.79218 * 291.25730 * 11 10 9 39 39 H 1.08995 * 109.47286 * 49.52650 * 13 12 11 40 40 H 1.09004 * 109.47021 * 169.51900 * 13 12 11 41 41 H 1.08996 * 109.47726 * 300.00154 * 14 13 12 42 42 H 1.09004 * 109.47054 * 59.99946 * 14 13 12 43 43 H 1.09004 * 109.47372 * 300.00300 * 15 14 13 44 44 H 1.08998 * 109.47097 * 60.00414 * 15 14 13 45 45 H 0.96998 * 119.99895 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1353 1.4052 0.0000 4 6 2.1648 -0.9646 1.0435 5 1 1.6109 -1.8926 1.1856 6 8 2.5305 -0.3342 2.2727 7 6 3.2878 -1.0624 0.0461 8 1 3.9528 -0.1989 0.0646 9 6 4.0212 -2.3501 -0.2897 10 6 4.6347 -2.1149 -1.6864 11 6 3.5871 -1.6984 -2.7113 12 7 2.7766 -0.5525 -2.2545 13 6 1.7746 -0.1909 -3.2660 14 6 2.4729 0.4355 -4.4746 15 6 1.4292 0.8127 -5.5278 16 6 2.1172 1.4292 -6.7185 17 1 3.1914 1.5412 -6.7234 18 6 1.3752 1.8512 -7.8013 19 7 0.0670 1.7162 -7.7948 20 14 2.2278 2.6160 -9.2769 21 1 3.6929 2.6542 -9.0371 22 1 1.9459 1.8034 -10.4875 23 1 1.7227 3.9976 -9.4794 24 6 2.1423 -0.9305 -1.0068 25 1 1.5796 -1.8587 -1.1060 26 1 -0.3632 0.6151 0.8233 27 1 -0.3633 0.4056 -0.9442 28 1 -0.3633 -1.0205 0.1209 29 1 3.2163 1.3353 0.1210 30 1 1.9065 1.8994 -0.9443 31 1 1.7141 1.9822 0.8233 32 1 2.9245 -0.9343 2.9206 33 1 4.8073 -2.5389 0.4414 34 1 3.3228 -3.1866 -0.3172 35 1 5.3898 -1.3321 -1.6141 36 1 5.1111 -3.0355 -2.0233 37 1 4.0914 -1.4254 -3.6381 38 1 2.9299 -2.5459 -2.9060 39 1 1.2366 -1.0851 -3.5804 40 1 1.0714 0.5255 -2.8410 41 1 3.0109 1.3298 -4.1602 42 1 3.1761 -0.2808 -4.8995 43 1 0.8908 -0.0814 -5.8424 44 1 0.7265 1.5293 -5.1026 45 1 -0.4550 2.0128 -8.5567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693135467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:11 Heat of formation + Delta-G solvation = -47.363403 kcal Electronic energy + Delta-G solvation = -21584.889755 eV Core-core repulsion = 18601.965339 eV Total energy + Delta-G solvation = -2982.924416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.43149 -38.25872 -36.24590 -35.62005 -34.68380 -32.55999 -30.93017 -28.47301 -28.46630 -26.94748 -25.00323 -23.93483 -22.50065 -21.34215 -21.03842 -19.57961 -18.51673 -18.13723 -16.66104 -16.53473 -16.28295 -15.87225 -15.69929 -15.17026 -14.95381 -14.71146 -14.41601 -14.28971 -13.89177 -13.66068 -13.39602 -13.21712 -13.06741 -12.92791 -12.82502 -12.68920 -12.49545 -12.36439 -12.26429 -11.97147 -11.73268 -11.57785 -11.47294 -11.41358 -11.25199 -11.10499 -10.57040 -10.46840 -10.32185 -9.32086 -8.21238 -6.32400 1.38729 1.39258 1.52943 2.39978 2.83125 3.11729 3.19678 3.37170 3.58788 3.73339 3.88491 4.04090 4.12946 4.23314 4.24865 4.34096 4.43449 4.52361 4.55419 4.56302 4.70333 4.78069 4.81658 4.83512 4.91597 4.96995 4.99691 5.05474 5.08437 5.10457 5.15132 5.18720 5.21028 5.27565 5.40060 5.50392 5.51405 5.61091 5.72252 5.84381 6.08447 6.21977 6.30507 6.84246 7.01336 7.36887 8.90981 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.004135 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.183466 B = 6769.517517 C = 7324.046418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.056 4.056 3 C -0.106 4.106 4 C 0.111 3.889 5 H 0.103 0.897 6 O -0.567 6.567 7 C -0.134 4.134 8 H 0.095 0.905 9 C -0.099 4.099 10 C -0.109 4.109 11 C 0.046 3.954 12 N -0.503 5.503 13 C 0.064 3.936 14 C -0.086 4.086 15 C 0.027 3.973 16 C -0.541 4.541 17 H 0.058 0.942 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.277 1.277 24 C 0.029 3.971 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.394 0.606 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.021 0.979 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.048 0.952 43 H -0.011 1.011 44 H -0.011 1.011 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.502 -9.602 20.429 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.057 4.057 3 C -0.163 4.163 4 C 0.052 3.948 5 H 0.120 0.880 6 O -0.375 6.375 7 C -0.153 4.153 8 H 0.113 0.887 9 C -0.137 4.137 10 C -0.147 4.147 11 C -0.082 4.082 12 N -0.226 5.226 13 C -0.063 4.063 14 C -0.124 4.124 15 C -0.011 4.011 16 C -0.579 4.579 17 H 0.076 0.924 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.080 4.080 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.243 0.757 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.007 0.993 44 H 0.008 0.992 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.458 -8.627 20.092 22.800 hybrid contribution -0.462 -0.577 -1.265 1.465 sum 5.997 -9.205 18.827 21.798 Atomic orbital electron populations 1.21762 0.93708 1.02431 1.01624 1.21672 0.95195 0.95422 0.93383 1.21297 1.00607 0.93980 1.00429 1.23015 0.94486 0.95045 0.82285 0.87990 1.86491 1.83528 1.40711 1.26725 1.23455 0.96039 0.99830 0.95990 0.88725 1.21532 1.00048 0.95959 0.96148 1.21577 0.97167 1.01657 0.94311 1.22188 0.96060 0.90915 0.98996 1.62854 1.21323 1.35875 1.02556 1.22036 0.93658 0.98223 0.92423 1.21346 0.97881 0.99195 0.93962 1.18964 0.94221 0.94468 0.93423 1.21700 0.93876 1.39991 1.02374 0.92402 1.25992 0.95516 0.96398 1.01918 1.70109 1.06616 1.48695 1.32000 0.85387 0.78995 0.78068 0.78533 1.18650 1.20190 1.20263 1.22759 0.97973 0.97532 0.89770 0.92201 0.91634 0.93705 0.91455 0.92193 0.94101 0.92455 0.75658 0.89918 0.91282 0.91953 0.89945 0.91585 0.95398 0.96043 0.92080 0.93331 0.93321 0.99272 0.99216 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.24 71.98 0.67 -2.45 16 2 C -0.06 -1.32 1.44 -54.23 -0.08 -1.40 16 3 C -0.11 -2.80 8.58 71.98 0.62 -2.19 16 4 C 0.11 2.01 4.45 28.34 0.13 2.13 16 5 H 0.10 1.47 8.12 -2.39 -0.02 1.45 16 6 O -0.57 -9.83 13.19 -148.98 -1.97 -11.79 16 7 C -0.13 -2.69 2.99 -12.89 -0.04 -2.73 16 8 H 0.09 2.27 6.12 -2.39 -0.01 2.26 16 9 C -0.10 -1.63 6.19 30.71 0.19 -1.44 16 10 C -0.11 -2.18 5.91 30.84 0.18 -2.00 16 11 C 0.05 1.23 5.09 85.96 0.44 1.67 16 12 N -0.50 -15.20 4.67 -888.25 -4.15 -19.35 16 13 C 0.06 2.38 4.90 86.30 0.42 2.80 16 14 C -0.09 -3.78 5.17 30.59 0.16 -3.62 16 15 C 0.03 1.48 4.97 29.85 0.15 1.63 16 16 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 18 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 19 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 20 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 C 0.03 0.72 1.71 43.09 0.07 0.80 16 25 H 0.06 1.47 7.90 -2.39 -0.02 1.45 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.16 8.07 -2.39 -0.02 1.14 16 28 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 29 H 0.06 1.60 6.04 -2.39 -0.01 1.58 16 30 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.39 3.12 9.12 -74.06 -0.68 2.45 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.04 8.04 -2.39 -0.02 1.02 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.97 6.57 -2.39 -0.02 1.95 16 38 H 0.03 0.75 8.06 -2.39 -0.02 0.73 16 39 H 0.02 0.81 8.02 -2.39 -0.02 0.79 16 40 H 0.06 2.34 8.00 -2.38 -0.02 2.32 16 41 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 2.09 6.67 -2.38 -0.02 2.07 16 43 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 44 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 45 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -67.84 345.37 0.06 -67.78 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.26 Total: 12.00 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 3.60 Total: -38.12 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -3.86 Total: -77.19 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.97 Total: -11.79 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -67.84 0.06 -67.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693135467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.416 kcal (2) G-P(sol) polarization free energy of solvation -67.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds