Wall clock time and date at job start Mon Mar 30 2020 07:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.87499 * 2 1 4 4 C 1.53870 * 113.65276 * 228.57352 * 2 1 3 5 5 H 1.08990 * 113.69897 * 156.47205 * 4 2 1 6 6 O 1.42901 * 113.69249 * 25.40604 * 4 2 1 7 7 C 1.53511 * 86.57301 * 270.99215 * 4 2 1 8 8 H 1.09002 * 112.30638 * 87.44221 * 7 4 2 9 9 C 1.51667 * 114.24714 * 215.41210 * 7 4 2 10 10 C 1.52724 * 111.06911 * 64.47910 * 9 7 4 11 11 C 1.53147 * 108.68161 * 54.59643 * 10 9 7 12 12 N 1.46350 * 108.98693 * 292.74387 * 11 10 9 13 13 C 1.46894 * 110.99949 * 184.84073 * 12 11 10 14 14 C 1.52997 * 109.47515 * 43.01534 * 13 12 11 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46828 * 90.00241 * 20 18 16 22 22 H 1.48494 * 109.47178 * 209.99936 * 20 18 16 23 23 H 1.48500 * 109.47075 * 330.00183 * 20 18 16 24 24 C 1.45795 * 113.31971 * 59.13742 * 12 11 10 25 25 H 1.09002 * 112.37621 * 93.04559 * 24 12 11 26 26 H 1.09006 * 109.46867 * 288.69668 * 1 2 3 27 27 H 1.08997 * 109.46944 * 48.68994 * 1 2 3 28 28 H 1.08997 * 109.47011 * 168.69724 * 1 2 3 29 29 H 1.09002 * 109.47212 * 191.30454 * 3 2 1 30 30 H 1.09003 * 109.47265 * 311.30813 * 3 2 1 31 31 H 1.09006 * 109.47345 * 71.30469 * 3 2 1 32 32 H 0.96704 * 114.00197 * 180.02562 * 6 4 2 33 33 H 1.09003 * 109.15694 * 184.89424 * 9 7 4 34 34 H 1.08998 * 109.15596 * 304.07197 * 9 7 4 35 35 H 1.09005 * 109.60430 * 174.35470 * 10 9 7 36 36 H 1.08997 * 109.60284 * 294.67692 * 10 9 7 37 37 H 1.09004 * 109.55469 * 172.89018 * 11 10 9 38 38 H 1.09002 * 109.55157 * 52.59755 * 11 10 9 39 39 H 1.09002 * 109.47104 * 283.01267 * 13 12 11 40 40 H 1.08998 * 109.46828 * 163.02099 * 13 12 11 41 41 H 1.09002 * 109.47153 * 59.99762 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99953 * 14 13 12 43 43 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 44 44 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 45 45 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1248 1.4097 0.0000 4 6 2.1473 -0.9326 -1.0568 5 1 3.1612 -0.6565 -1.3460 6 8 1.2950 -1.1734 -2.1782 7 6 2.0862 -2.0328 0.0120 8 1 1.1291 -2.5544 0.0146 9 6 3.2456 -3.0096 -0.0326 10 6 4.5657 -2.3096 0.2832 11 6 4.4295 -1.5889 1.6275 12 7 3.4719 -0.4914 1.4845 13 6 3.3927 0.3023 2.7180 14 6 4.8019 0.5342 3.2667 15 6 4.7193 1.3603 4.5519 16 6 6.1075 1.5892 5.0920 17 1 6.9630 1.1854 4.5709 18 6 6.2852 2.3141 6.2513 19 7 5.2435 2.8062 6.8854 20 14 8.0059 2.5972 6.9211 21 1 8.5605 3.8496 6.3474 22 1 7.9482 2.7136 8.4004 23 1 8.8767 1.4537 6.5481 24 6 2.1483 -0.9319 1.0606 25 1 1.4830 -1.1178 1.9038 26 1 -0.3633 0.3294 0.9735 27 1 -0.3633 0.6784 -0.7719 28 1 -0.3633 -1.0077 -0.2014 29 1 3.1945 1.3527 -0.2014 30 1 1.6410 2.0082 -0.7720 31 1 1.9625 1.8725 0.9735 32 1 1.6785 -1.7594 -2.8451 33 1 3.0758 -3.8000 0.6986 34 1 3.3036 -3.4506 -1.0277 35 1 5.3657 -3.0476 0.3433 36 1 4.7931 -1.5870 -0.5005 37 1 5.3987 -1.1905 1.9278 38 1 4.0716 -2.2892 2.3823 39 1 2.7985 -0.2342 3.4577 40 1 2.9240 1.2625 2.5027 41 1 5.3961 1.0707 2.5270 42 1 5.2705 -0.4261 3.4820 43 1 4.2505 2.3206 4.3370 44 1 4.1252 0.8234 5.2913 45 1 5.3686 3.3164 7.7008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693135468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:14 Heat of formation + Delta-G solvation = -43.397856 kcal Electronic energy + Delta-G solvation = -21693.993294 eV Core-core repulsion = 18711.240837 eV Total energy + Delta-G solvation = -2982.752457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13794 -36.99368 -34.90515 -34.45344 -32.99726 -30.73910 -29.95843 -27.33478 -26.75122 -25.67211 -23.63071 -23.05926 -21.82437 -19.95241 -19.24993 -17.91862 -17.40920 -16.41339 -15.69814 -15.07829 -14.80732 -14.55426 -14.46564 -14.26945 -14.05241 -13.42425 -13.29254 -12.77920 -12.61161 -12.21099 -12.18609 -12.00617 -11.78460 -11.56221 -11.43979 -11.09438 -11.06958 -10.97450 -10.81484 -10.77229 -10.52894 -10.35686 -10.04830 -9.92378 -9.60323 -9.42985 -9.31467 -9.02665 -8.33158 -7.89321 -5.98478 -4.00650 3.32741 3.38890 3.42062 3.95486 4.18882 4.45972 4.46572 4.53941 4.62901 4.91891 5.02310 5.11619 5.19841 5.37381 5.37573 5.49337 5.55742 5.61219 5.70294 5.80936 5.83379 5.84399 5.88051 5.92411 5.98971 6.03401 6.04898 6.17268 6.20067 6.24164 6.27822 6.36121 6.54969 6.60007 6.73265 6.85256 7.11010 7.46043 7.52731 7.60772 7.69269 7.84352 8.01747 8.44764 9.06498 9.63324 11.12948 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.004118 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.563031 B = 6797.266586 C = 7318.761768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.125 4.125 4 C 0.095 3.905 5 H 0.087 0.913 6 O -0.560 6.560 7 C -0.134 4.134 8 H 0.092 0.908 9 C -0.110 4.110 10 C -0.119 4.119 11 C 0.056 3.944 12 N -0.527 5.527 13 C 0.060 3.940 14 C -0.112 4.112 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.081 3.919 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.370 0.630 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.016 0.984 44 H 0.013 0.987 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 -10.302 -16.573 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.066 4.066 3 C -0.182 4.182 4 C 0.037 3.963 5 H 0.105 0.895 6 O -0.365 6.365 7 C -0.153 4.153 8 H 0.110 0.890 9 C -0.147 4.147 10 C -0.156 4.156 11 C -0.072 4.072 12 N -0.251 5.251 13 C -0.067 4.067 14 C -0.150 4.150 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.029 4.029 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.217 0.783 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.034 0.966 44 H 0.031 0.969 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.259 -9.523 -16.424 20.326 hybrid contribution 0.937 -0.730 0.899 1.489 sum -6.322 -10.253 -15.526 19.650 Atomic orbital electron populations 1.21424 0.92991 1.01975 1.01220 1.22119 0.95344 0.95320 0.93841 1.21606 1.01395 0.93915 1.01262 1.23580 0.93547 0.95183 0.84023 0.89502 1.86519 1.45725 1.70773 1.33451 1.22733 0.99457 0.95424 0.97655 0.89008 1.21092 0.94687 0.97696 1.01259 1.21599 0.96614 0.99211 0.98213 1.22057 0.97482 0.91887 0.95758 1.60753 1.06937 1.23104 1.34285 1.22370 0.99525 0.97014 0.87759 1.21810 0.93398 1.00385 0.99378 1.19063 0.97032 0.94681 0.90745 1.21241 0.92888 1.33216 1.08335 0.92742 1.25021 0.96699 0.95821 0.96906 1.69963 1.29267 1.36202 1.18116 0.86612 0.84863 0.78585 0.78048 1.20654 1.21270 1.19910 1.22014 0.90842 0.94654 0.95347 0.92825 0.92805 0.92263 0.92514 0.91255 0.93703 0.92263 0.78332 0.92278 0.92150 0.91570 0.91205 0.89147 0.95242 0.95438 0.90800 0.92557 0.93179 0.96565 0.96864 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.46 37.16 0.31 -1.07 16 2 C -0.07 -0.81 1.36 -153.48 -0.21 -1.02 16 3 C -0.12 -1.64 8.11 37.16 0.30 -1.34 16 4 C 0.10 1.07 4.03 -26.01 -0.10 0.96 16 5 H 0.09 1.01 6.74 -51.93 -0.35 0.66 16 6 O -0.56 -5.89 12.77 -35.23 -0.45 -6.34 16 7 C -0.13 -1.48 3.41 -91.47 -0.31 -1.79 16 8 H 0.09 1.01 7.49 -51.93 -0.39 0.62 16 9 C -0.11 -1.10 5.67 -27.55 -0.16 -1.25 16 10 C -0.12 -1.30 5.89 -26.80 -0.16 -1.46 16 11 C 0.06 0.76 4.72 -4.05 -0.02 0.75 16 12 N -0.53 -7.68 3.39 -227.69 -0.77 -8.45 16 13 C 0.06 1.04 5.02 -3.83 -0.02 1.02 16 14 C -0.11 -2.29 4.27 -26.73 -0.11 -2.40 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.08 1.07 3.01 -68.15 -0.21 0.86 16 25 H 0.05 0.76 7.70 -51.93 -0.40 0.36 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.64 7.07 -51.93 -0.37 0.28 16 29 H 0.07 0.97 7.55 -51.93 -0.39 0.57 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.83 6.51 -51.93 -0.34 0.49 16 32 H 0.37 2.37 9.12 45.56 0.42 2.79 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.78 7.03 -51.93 -0.36 0.41 16 37 H 0.09 1.34 5.90 -51.93 -0.31 1.04 16 38 H 0.03 0.42 8.13 -51.93 -0.42 0.00 16 39 H 0.03 0.50 7.86 -51.93 -0.41 0.09 16 40 H 0.07 1.31 6.22 -51.93 -0.32 0.98 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.05 1.00 6.27 -51.93 -0.33 0.68 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 336.71 15.07 5.07 5.07 Total: -1.00 -30.32 336.71 -8.98 -39.30 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.32 Total: -0.12 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.23 Total: -19.81 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.04 Total: -34.83 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.45 Total: -6.34 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.32 -8.98 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693135468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.096 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds