Wall clock time and date at job start Mon Mar 30 2020 07:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.87499 * 2 1 4 4 C 1.53870 * 113.65276 * 228.57352 * 2 1 3 5 5 H 1.08990 * 113.69897 * 156.47205 * 4 2 1 6 6 O 1.42901 * 113.69249 * 25.40604 * 4 2 1 7 7 C 1.53511 * 86.57301 * 270.99215 * 4 2 1 8 8 H 1.09002 * 112.30638 * 87.44221 * 7 4 2 9 9 C 1.51667 * 114.24714 * 215.41210 * 7 4 2 10 10 C 1.52724 * 111.06911 * 64.47910 * 9 7 4 11 11 C 1.53147 * 108.68161 * 54.59643 * 10 9 7 12 12 N 1.46350 * 108.98693 * 292.74387 * 11 10 9 13 13 C 1.46894 * 110.99949 * 184.84073 * 12 11 10 14 14 C 1.52997 * 109.47515 * 43.01534 * 13 12 11 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46828 * 90.00241 * 20 18 16 22 22 H 1.48494 * 109.47178 * 209.99936 * 20 18 16 23 23 H 1.48500 * 109.47075 * 330.00183 * 20 18 16 24 24 C 1.45795 * 113.31971 * 59.13742 * 12 11 10 25 25 H 1.09002 * 112.37621 * 93.04559 * 24 12 11 26 26 H 1.09006 * 109.46867 * 288.69668 * 1 2 3 27 27 H 1.08997 * 109.46944 * 48.68994 * 1 2 3 28 28 H 1.08997 * 109.47011 * 168.69724 * 1 2 3 29 29 H 1.09002 * 109.47212 * 191.30454 * 3 2 1 30 30 H 1.09003 * 109.47265 * 311.30813 * 3 2 1 31 31 H 1.09006 * 109.47345 * 71.30469 * 3 2 1 32 32 H 0.96704 * 114.00197 * 180.02562 * 6 4 2 33 33 H 1.09003 * 109.15694 * 184.89424 * 9 7 4 34 34 H 1.08998 * 109.15596 * 304.07197 * 9 7 4 35 35 H 1.09005 * 109.60430 * 174.35470 * 10 9 7 36 36 H 1.08997 * 109.60284 * 294.67692 * 10 9 7 37 37 H 1.09004 * 109.55469 * 172.89018 * 11 10 9 38 38 H 1.09002 * 109.55157 * 52.59755 * 11 10 9 39 39 H 1.09002 * 109.47104 * 283.01267 * 13 12 11 40 40 H 1.08998 * 109.46828 * 163.02099 * 13 12 11 41 41 H 1.09002 * 109.47153 * 59.99762 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99953 * 14 13 12 43 43 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 44 44 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 45 45 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1248 1.4097 0.0000 4 6 2.1473 -0.9326 -1.0568 5 1 3.1612 -0.6565 -1.3460 6 8 1.2950 -1.1734 -2.1782 7 6 2.0862 -2.0328 0.0120 8 1 1.1291 -2.5544 0.0146 9 6 3.2456 -3.0096 -0.0326 10 6 4.5657 -2.3096 0.2832 11 6 4.4295 -1.5889 1.6275 12 7 3.4719 -0.4914 1.4845 13 6 3.3927 0.3023 2.7180 14 6 4.8019 0.5342 3.2667 15 6 4.7193 1.3603 4.5519 16 6 6.1075 1.5892 5.0920 17 1 6.9630 1.1854 4.5709 18 6 6.2852 2.3141 6.2513 19 7 5.2435 2.8062 6.8854 20 14 8.0059 2.5972 6.9211 21 1 8.5605 3.8496 6.3474 22 1 7.9482 2.7136 8.4004 23 1 8.8767 1.4537 6.5481 24 6 2.1483 -0.9319 1.0606 25 1 1.4830 -1.1178 1.9038 26 1 -0.3633 0.3294 0.9735 27 1 -0.3633 0.6784 -0.7719 28 1 -0.3633 -1.0077 -0.2014 29 1 3.1945 1.3527 -0.2014 30 1 1.6410 2.0082 -0.7720 31 1 1.9625 1.8725 0.9735 32 1 1.6785 -1.7594 -2.8451 33 1 3.0758 -3.8000 0.6986 34 1 3.3036 -3.4506 -1.0277 35 1 5.3657 -3.0476 0.3433 36 1 4.7931 -1.5870 -0.5005 37 1 5.3987 -1.1905 1.9278 38 1 4.0716 -2.2892 2.3823 39 1 2.7985 -0.2342 3.4577 40 1 2.9240 1.2625 2.5027 41 1 5.3961 1.0707 2.5270 42 1 5.2705 -0.4261 3.4820 43 1 4.2505 2.3206 4.3370 44 1 4.1252 0.8234 5.2913 45 1 5.3686 3.3164 7.7008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693135468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:13 Heat of formation + Delta-G solvation = -62.578934 kcal Electronic energy + Delta-G solvation = -21694.825048 eV Core-core repulsion = 18711.240837 eV Total energy + Delta-G solvation = -2983.584211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.12900 -38.14914 -36.15438 -35.54339 -34.75836 -32.50218 -30.94440 -28.45799 -28.30461 -26.87231 -25.06454 -24.12577 -23.33877 -21.46447 -20.30134 -18.90491 -18.56912 -18.22253 -16.96048 -16.45317 -16.37365 -15.78309 -15.62042 -15.38850 -15.08344 -14.66330 -14.45766 -14.19697 -13.86985 -13.68103 -13.48514 -13.20054 -13.08695 -12.93486 -12.70429 -12.57783 -12.43274 -12.33812 -12.05308 -12.02218 -11.91108 -11.66374 -11.40511 -11.25725 -11.22198 -10.96877 -10.79829 -10.54967 -10.31828 -9.11119 -8.20164 -6.31416 1.39882 1.41421 1.52420 2.40639 2.81655 3.13127 3.34913 3.52634 3.55547 3.71879 3.98422 4.11055 4.14521 4.23381 4.26346 4.40721 4.43183 4.49648 4.61828 4.66465 4.71320 4.74390 4.85939 4.86962 4.99160 5.00162 5.01013 5.07006 5.12320 5.14028 5.18872 5.19417 5.26405 5.33283 5.38652 5.50193 5.58401 5.61026 5.73804 5.84626 6.14486 6.26694 6.37322 6.85493 7.00364 7.37995 8.91890 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.004118 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.563031 B = 6797.266586 C = 7318.761768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 C -0.120 4.120 4 C 0.108 3.892 5 H 0.087 0.913 6 O -0.569 6.569 7 C -0.123 4.123 8 H 0.097 0.903 9 C -0.107 4.107 10 C -0.111 4.111 11 C 0.050 3.950 12 N -0.521 5.521 13 C 0.072 3.928 14 C -0.093 4.093 15 C 0.026 3.974 16 C -0.541 4.541 17 H 0.060 0.940 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.262 1.262 24 C 0.070 3.930 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.391 0.609 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.021 0.979 39 H 0.016 0.984 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.055 0.945 43 H -0.010 1.010 44 H -0.013 1.013 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -11.647 -18.260 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.073 4.073 3 C -0.178 4.178 4 C 0.049 3.951 5 H 0.105 0.895 6 O -0.376 6.376 7 C -0.142 4.142 8 H 0.116 0.884 9 C -0.144 4.144 10 C -0.149 4.149 11 C -0.077 4.077 12 N -0.245 5.245 13 C -0.055 4.055 14 C -0.131 4.131 15 C -0.011 4.011 16 C -0.579 4.579 17 H 0.079 0.921 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.790 3.210 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 C -0.039 4.039 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.240 0.760 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.009 0.991 44 H 0.005 0.995 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.354 -10.890 -18.145 22.095 hybrid contribution 0.600 -0.301 1.415 1.566 sum -5.754 -11.191 -16.730 20.934 Atomic orbital electron populations 1.21383 0.92397 1.02297 1.01100 1.22190 0.95851 0.94860 0.94442 1.21544 1.00963 0.94705 1.00564 1.23333 0.93245 0.94367 0.84152 0.89539 1.86475 1.45916 1.71514 1.33713 1.22678 1.00359 0.95108 0.96038 0.88445 1.21091 0.93327 0.97194 1.02787 1.21563 0.97895 0.99352 0.96085 1.22131 0.96336 0.91562 0.97670 1.60732 1.08138 1.23579 1.32048 1.22080 0.97158 0.97379 0.88878 1.21540 0.95384 0.99449 0.96733 1.18962 0.95607 0.93937 0.92626 1.21677 0.93932 1.33431 1.08875 0.92132 1.25990 1.01293 0.95352 0.97204 1.70102 1.31857 1.36890 1.18643 0.85445 0.79338 0.78968 0.77289 1.19731 1.20782 1.18633 1.22098 0.89625 0.96565 0.95601 0.94195 0.93170 0.92086 0.91987 0.92131 0.92879 0.93890 0.76001 0.92159 0.89588 0.89895 0.91044 0.90524 0.96024 0.96545 0.91430 0.92569 0.92626 0.99126 0.99481 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 8.46 71.98 0.61 -1.94 16 2 C -0.07 -1.74 1.36 -51.51 -0.07 -1.81 16 3 C -0.12 -3.16 8.11 71.98 0.58 -2.57 16 4 C 0.11 2.17 4.03 31.06 0.13 2.29 16 5 H 0.09 1.78 6.74 -2.39 -0.02 1.77 16 6 O -0.57 -10.25 12.77 -148.98 -1.90 -12.15 16 7 C -0.12 -2.44 3.41 -11.34 -0.04 -2.48 16 8 H 0.10 1.88 7.49 -2.39 -0.02 1.86 16 9 C -0.11 -1.80 5.67 30.07 0.17 -1.63 16 10 C -0.11 -2.16 5.89 30.55 0.18 -1.98 16 11 C 0.05 1.34 4.72 86.46 0.41 1.75 16 12 N -0.52 -15.12 3.39 -874.28 -2.96 -18.08 16 13 C 0.07 2.61 5.02 86.30 0.43 3.04 16 14 C -0.09 -3.91 4.27 30.59 0.13 -3.78 16 15 C 0.03 1.42 4.97 29.85 0.15 1.57 16 16 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 19 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 20 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 C 0.07 1.81 3.01 45.23 0.14 1.95 16 25 H 0.04 1.14 7.70 -2.39 -0.02 1.12 16 26 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.31 7.07 -2.39 -0.02 1.29 16 29 H 0.06 1.67 7.55 -2.39 -0.02 1.65 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.24 6.51 -2.38 -0.02 1.22 16 32 H 0.39 3.60 9.12 -74.05 -0.68 2.92 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.07 1.39 7.03 -2.39 -0.02 1.38 16 37 H 0.08 2.24 5.90 -2.38 -0.01 2.23 16 38 H 0.02 0.61 8.13 -2.39 -0.02 0.59 16 39 H 0.02 0.62 7.86 -2.39 -0.02 0.60 16 40 H 0.07 2.51 6.22 -2.39 -0.01 2.49 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.06 2.26 6.27 -2.39 -0.01 2.24 16 43 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 44 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -65.59 336.71 1.23 -64.35 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.28 Total: 12.89 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 3.51 Total: -36.20 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -2.68 Total: -75.56 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -1.90 Total: -12.15 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.59 1.23 -64.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693135468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.775 kcal (2) G-P(sol) polarization free energy of solvation -65.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds