Wall clock time and date at job start Mon Mar 30 2020 07:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47654 * 2 1 4 4 C 1.53000 * 109.47273 * 120.00369 * 2 1 3 5 5 C 1.52999 * 109.47407 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.46971 * 60.00153 * 5 4 2 7 7 O 1.42901 * 109.47272 * 179.97438 * 5 4 2 8 8 C 1.42898 * 114.00293 * 210.00182 * 7 5 4 9 9 C 1.52990 * 109.47290 * 179.97438 * 8 7 5 10 10 C 1.50697 * 115.55279 * 294.88751 * 9 8 7 11 11 H 1.08002 * 120.00091 * 94.74931 * 10 9 8 12 12 C 1.37878 * 120.00210 * 275.02789 * 10 9 8 13 13 N 1.31519 * 119.99725 * 6.36830 * 12 10 9 14 14 Si 1.86798 * 120.00042 * 186.36573 * 12 10 9 15 15 H 1.48499 * 109.47202 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47066 * 120.00278 * 14 12 10 17 17 H 1.48507 * 109.46978 * 239.99930 * 14 12 10 18 18 C 1.53002 * 117.50040 * 80.56144 * 9 8 7 19 19 C 1.53004 * 117.49886 * 149.21592 * 9 8 7 20 20 C 1.52997 * 109.47162 * 299.99870 * 5 4 2 21 21 C 1.53002 * 109.46957 * 60.00166 * 20 5 4 22 22 H 1.08996 * 109.47550 * 60.00208 * 21 20 5 23 23 N 1.46902 * 109.46885 * 180.02562 * 21 20 5 24 24 C 1.52999 * 109.47049 * 299.99903 * 21 20 5 25 25 H 1.09000 * 109.47166 * 300.00288 * 1 2 3 26 26 H 1.08997 * 109.47122 * 59.99690 * 1 2 3 27 27 H 1.08997 * 109.47679 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47396 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47110 * 300.00318 * 3 2 1 30 30 H 1.09007 * 109.47028 * 60.00055 * 3 2 1 31 31 H 1.09004 * 109.46930 * 59.99801 * 4 2 1 32 32 H 1.09000 * 109.47227 * 299.99682 * 4 2 1 33 33 H 1.09003 * 109.47267 * 59.99658 * 8 7 5 34 34 H 1.09001 * 109.46856 * 300.00495 * 8 7 5 35 35 H 0.97004 * 119.99807 * 180.02562 * 13 12 10 36 36 H 1.09000 * 117.50037 * 215.00322 * 18 9 8 37 37 H 1.09000 * 117.49589 * 0.02562 * 18 9 8 38 38 H 1.09001 * 117.49881 * 359.97438 * 19 9 8 39 39 H 1.09001 * 117.49858 * 144.97399 * 19 9 8 40 40 H 1.09001 * 109.47312 * 179.97438 * 20 5 4 41 41 H 1.08997 * 109.47175 * 300.00330 * 20 5 4 42 42 H 1.00897 * 110.99928 * 299.99835 * 23 21 20 43 43 H 1.00898 * 111.00401 * 63.95418 * 23 21 20 44 44 H 1.09004 * 109.46971 * 299.99939 * 24 21 20 45 45 H 1.09005 * 109.47277 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 1 3.9337 0.3057 1.2488 7 8 4.0463 -1.3951 2.4159 8 6 5.3062 -0.9156 2.8900 9 6 5.7156 -1.7034 4.1360 10 6 4.8276 -1.5227 5.3401 11 1 4.0283 -2.2233 5.5316 12 6 5.0320 -0.4598 6.1942 13 7 5.9176 0.4648 5.8931 14 14 4.0512 -0.3331 7.7789 15 1 3.1276 -1.4912 7.8834 16 1 4.9801 -0.3351 8.9375 17 1 3.2666 0.9278 7.7758 18 6 6.3482 -3.0804 3.9250 19 6 7.2118 -1.9035 4.3853 20 6 4.0795 -1.4435 -0.0003 21 6 3.5695 -0.7221 -1.2496 22 1 3.9332 0.3054 -1.2498 23 7 4.0582 -1.4153 -2.4490 24 6 2.0395 -0.7215 -1.2493 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -1.7490 1.2491 32 1 1.6767 -0.2075 2.1392 33 1 5.2216 0.1418 3.1407 34 1 6.0600 -1.0456 2.1135 35 1 6.0616 1.2124 6.4942 36 1 6.1221 -3.8557 4.6570 37 1 6.4731 -3.4249 2.8984 38 1 7.9045 -1.4743 3.6614 39 1 7.5540 -1.9041 5.4202 40 1 5.1695 -1.4435 -0.0008 41 1 3.7157 -2.4709 -0.0002 42 1 5.0668 -1.4295 -2.4727 43 1 3.6820 -2.3498 -2.5051 44 1 1.6758 -1.7491 -1.2491 45 1 1.6762 -0.2080 -2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694611735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:55 Heat of formation + Delta-G solvation = -48.917594 kcal Electronic energy + Delta-G solvation = -21684.524318 eV Core-core repulsion = 18701.532507 eV Total energy + Delta-G solvation = -2982.991811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.83165 -37.22238 -35.44989 -34.68308 -31.88776 -30.64159 -28.14819 -27.32141 -26.36550 -26.03791 -24.87786 -21.56416 -21.08263 -20.80568 -19.21226 -18.44499 -16.35563 -15.95244 -15.84874 -14.99536 -14.69491 -14.45122 -14.31591 -13.97148 -13.81264 -13.66461 -13.23960 -13.07218 -12.49667 -12.19993 -11.97051 -11.88095 -11.49289 -11.44237 -11.21173 -11.05024 -10.97033 -10.79843 -10.63978 -10.52237 -10.36642 -10.32642 -10.19191 -9.81705 -9.47871 -9.11549 -8.75875 -8.42607 -8.36884 -8.07949 -6.00736 -4.03410 3.30380 3.38525 3.43935 4.26276 4.39417 4.44841 4.70636 4.88763 5.05268 5.15123 5.24719 5.30121 5.32495 5.44679 5.50889 5.56437 5.62445 5.69668 5.72649 5.76548 5.87895 5.96273 6.06293 6.07150 6.17184 6.21459 6.24018 6.26607 6.36842 6.38797 6.45526 6.56398 6.57143 6.75289 6.75954 6.84393 7.07028 7.09455 7.35488 7.46409 7.54414 7.93274 8.23013 8.51589 8.97649 9.61026 11.09120 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.005461 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.143398 B = 5126.004420 C = 6007.598299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 C -0.147 4.147 4 C -0.104 4.104 5 C 0.092 3.908 6 H 0.055 0.945 7 O -0.366 6.366 8 C 0.111 3.889 9 C 0.045 3.955 10 C -0.479 4.479 11 H 0.061 0.939 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.889 3.111 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.206 4.206 19 C -0.153 4.153 20 C -0.172 4.172 21 C 0.090 3.910 22 H 0.082 0.918 23 N -0.845 5.845 24 C -0.098 4.098 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.010 0.990 35 H 0.258 0.742 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.340 0.660 43 H 0.337 0.663 44 H 0.060 0.940 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 -0.417 -13.739 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.204 4.204 4 C -0.142 4.142 5 C 0.032 3.968 6 H 0.073 0.927 7 O -0.285 6.285 8 C 0.035 3.965 9 C 0.045 3.955 10 C -0.517 4.517 11 H 0.079 0.921 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.717 3.283 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.243 4.243 19 C -0.191 4.191 20 C -0.212 4.212 21 C -0.022 4.022 22 H 0.100 0.900 23 N -0.373 5.373 24 C -0.136 4.136 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.079 0.921 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.373 0.188 -13.994 15.378 hybrid contribution 0.306 -0.320 1.479 1.544 sum -6.067 -0.131 -12.515 13.909 Atomic orbital electron populations 1.21826 0.94354 1.01730 1.01663 1.20480 0.95385 0.95539 0.94755 1.22004 1.01492 0.95279 1.01647 1.21625 0.94338 1.01017 0.97194 1.21879 0.94000 0.95260 0.85632 0.92683 1.87991 1.38071 1.60186 1.42209 1.22170 0.82445 0.98506 0.93394 1.18746 0.91918 0.91692 0.93180 1.20431 1.14662 1.10488 1.06138 0.92088 1.24976 0.95228 0.95356 0.97909 1.70019 1.34480 1.11212 1.36590 0.86577 0.80056 0.78007 0.83653 1.19659 1.21035 1.21088 1.22945 1.08874 0.93478 0.99029 1.22523 0.94840 1.01473 1.00216 1.22908 1.00815 1.00931 0.96522 1.21495 0.95313 0.98239 0.87122 0.90006 1.59025 1.13789 1.23580 1.40900 1.21585 0.94143 1.00534 0.97322 0.92431 0.92773 0.92692 0.92163 0.92806 0.92414 0.91472 0.91011 0.92942 0.97182 0.93213 0.90438 0.91837 0.92020 0.89800 0.92254 0.91559 0.84812 0.85082 0.92137 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.47 37.15 0.31 -1.11 16 2 C -0.06 -0.72 0.77 -154.51 -0.12 -0.83 16 3 C -0.15 -1.70 7.78 37.16 0.29 -1.41 16 4 C -0.10 -1.55 4.38 -26.73 -0.12 -1.67 16 5 C 0.09 1.55 2.34 -26.73 -0.06 1.48 16 6 H 0.06 0.94 6.07 -51.93 -0.32 0.63 16 7 O -0.37 -8.03 9.92 -35.23 -0.35 -8.38 16 8 C 0.11 2.60 5.57 37.15 0.21 2.81 16 9 C 0.05 1.15 1.60 -155.66 -0.25 0.90 16 10 C -0.48 -13.45 8.76 -34.44 -0.30 -13.75 16 11 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 12 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 13 N -0.89 -25.25 12.94 55.43 0.72 -24.53 16 14 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 C -0.21 -4.69 9.96 -26.70 -0.27 -4.95 16 19 C -0.15 -3.66 9.44 -26.70 -0.25 -3.91 16 20 C -0.17 -2.44 5.11 -26.73 -0.14 -2.58 16 21 C 0.09 1.06 2.97 -67.71 -0.20 0.85 16 22 H 0.08 1.01 6.43 -51.93 -0.33 0.68 16 23 N -0.85 -8.79 9.25 -4.67 -0.04 -8.83 16 24 C -0.10 -1.09 4.27 -26.73 -0.11 -1.20 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.33 8.08 -51.93 -0.42 0.91 16 34 H 0.01 0.22 7.82 -51.93 -0.41 -0.19 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 40 H 0.06 0.88 7.87 -51.93 -0.41 0.47 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.34 3.25 9.04 -39.29 -0.36 2.89 16 43 H 0.34 3.18 8.98 -39.29 -0.35 2.83 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -28.98 349.00 -8.85 -37.83 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.31 Total: 5.81 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -1.10 Total: -23.60 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.67 Total: -33.37 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.35 Total: -8.38 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.98 -8.85 -37.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694611735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.088 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds