Wall clock time and date at job start Mon Mar 30 2020 07:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47654 * 2 1 4 4 C 1.53000 * 109.47273 * 120.00369 * 2 1 3 5 5 C 1.52999 * 109.47407 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.46971 * 60.00153 * 5 4 2 7 7 O 1.42901 * 109.47272 * 179.97438 * 5 4 2 8 8 C 1.42898 * 114.00293 * 210.00182 * 7 5 4 9 9 C 1.52990 * 109.47290 * 179.97438 * 8 7 5 10 10 C 1.50697 * 115.55279 * 294.88751 * 9 8 7 11 11 H 1.08002 * 120.00091 * 94.74931 * 10 9 8 12 12 C 1.37878 * 120.00210 * 275.02789 * 10 9 8 13 13 N 1.31519 * 119.99725 * 6.36830 * 12 10 9 14 14 Si 1.86798 * 120.00042 * 186.36573 * 12 10 9 15 15 H 1.48499 * 109.47202 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47066 * 120.00278 * 14 12 10 17 17 H 1.48507 * 109.46978 * 239.99930 * 14 12 10 18 18 C 1.53002 * 117.50040 * 80.56144 * 9 8 7 19 19 C 1.53004 * 117.49886 * 149.21592 * 9 8 7 20 20 C 1.52997 * 109.47162 * 299.99870 * 5 4 2 21 21 C 1.53002 * 109.46957 * 60.00166 * 20 5 4 22 22 H 1.08996 * 109.47550 * 60.00208 * 21 20 5 23 23 N 1.46902 * 109.46885 * 180.02562 * 21 20 5 24 24 C 1.52999 * 109.47049 * 299.99903 * 21 20 5 25 25 H 1.09000 * 109.47166 * 300.00288 * 1 2 3 26 26 H 1.08997 * 109.47122 * 59.99690 * 1 2 3 27 27 H 1.08997 * 109.47679 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47396 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47110 * 300.00318 * 3 2 1 30 30 H 1.09007 * 109.47028 * 60.00055 * 3 2 1 31 31 H 1.09004 * 109.46930 * 59.99801 * 4 2 1 32 32 H 1.09000 * 109.47227 * 299.99682 * 4 2 1 33 33 H 1.09003 * 109.47267 * 59.99658 * 8 7 5 34 34 H 1.09001 * 109.46856 * 300.00495 * 8 7 5 35 35 H 0.97004 * 119.99807 * 180.02562 * 13 12 10 36 36 H 1.09000 * 117.50037 * 215.00322 * 18 9 8 37 37 H 1.09000 * 117.49589 * 0.02562 * 18 9 8 38 38 H 1.09001 * 117.49881 * 359.97438 * 19 9 8 39 39 H 1.09001 * 117.49858 * 144.97399 * 19 9 8 40 40 H 1.09001 * 109.47312 * 179.97438 * 20 5 4 41 41 H 1.08997 * 109.47175 * 300.00330 * 20 5 4 42 42 H 1.00897 * 110.99928 * 299.99835 * 23 21 20 43 43 H 1.00898 * 111.00401 * 63.95418 * 23 21 20 44 44 H 1.09004 * 109.46971 * 299.99939 * 24 21 20 45 45 H 1.09005 * 109.47277 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 1 3.9337 0.3057 1.2488 7 8 4.0463 -1.3951 2.4159 8 6 5.3062 -0.9156 2.8900 9 6 5.7156 -1.7034 4.1360 10 6 4.8276 -1.5227 5.3401 11 1 4.0283 -2.2233 5.5316 12 6 5.0320 -0.4598 6.1942 13 7 5.9176 0.4648 5.8931 14 14 4.0512 -0.3331 7.7789 15 1 3.1276 -1.4912 7.8834 16 1 4.9801 -0.3351 8.9375 17 1 3.2666 0.9278 7.7758 18 6 6.3482 -3.0804 3.9250 19 6 7.2118 -1.9035 4.3853 20 6 4.0795 -1.4435 -0.0003 21 6 3.5695 -0.7221 -1.2496 22 1 3.9332 0.3054 -1.2498 23 7 4.0582 -1.4153 -2.4490 24 6 2.0395 -0.7215 -1.2493 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -1.7490 1.2491 32 1 1.6767 -0.2075 2.1392 33 1 5.2216 0.1418 3.1407 34 1 6.0600 -1.0456 2.1135 35 1 6.0616 1.2124 6.4942 36 1 6.1221 -3.8557 4.6570 37 1 6.4731 -3.4249 2.8984 38 1 7.9045 -1.4743 3.6614 39 1 7.5540 -1.9041 5.4202 40 1 5.1695 -1.4435 -0.0008 41 1 3.7157 -2.4709 -0.0002 42 1 5.0668 -1.4295 -2.4727 43 1 3.6820 -2.3498 -2.5051 44 1 1.6758 -1.7491 -1.2491 45 1 1.6762 -0.2080 -2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694611735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:54 Heat of formation + Delta-G solvation = -66.113579 kcal Electronic energy + Delta-G solvation = -21685.269992 eV Core-core repulsion = 18701.532507 eV Total energy + Delta-G solvation = -2983.737485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97474 -38.94036 -37.14045 -35.62092 -34.00903 -31.88809 -29.14864 -28.24111 -27.99751 -27.39062 -26.81150 -23.04754 -22.62538 -21.93274 -21.14456 -19.53994 -18.21662 -17.35356 -16.87857 -16.73270 -16.34934 -16.01247 -15.65333 -15.33505 -14.95307 -14.73367 -14.67349 -14.19303 -13.94856 -13.88137 -13.35663 -12.95459 -12.89640 -12.85716 -12.82130 -12.44791 -12.37461 -12.31563 -12.11581 -12.07356 -11.85266 -11.56781 -11.42262 -11.28595 -10.98352 -10.89252 -10.46933 -10.34619 -10.02478 -9.56336 -8.13205 -6.22095 1.37506 1.39871 1.51426 2.41608 2.78728 3.16284 3.46995 3.53504 3.67780 3.89318 4.02769 4.08634 4.14504 4.24784 4.29202 4.37612 4.42637 4.49303 4.53831 4.56741 4.66953 4.74325 4.80919 4.84869 4.88990 4.95230 4.95871 5.05242 5.07825 5.12437 5.15925 5.18927 5.22481 5.25843 5.43015 5.44936 5.55571 5.57939 5.61307 5.76513 6.21395 6.38555 6.58236 6.63294 6.81710 7.45011 8.96135 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020371 B = 0.005461 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.143398 B = 5126.004420 C = 6007.598299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.055 4.055 3 C -0.147 4.147 4 C -0.100 4.100 5 C 0.083 3.917 6 H 0.048 0.952 7 O -0.390 6.390 8 C 0.128 3.872 9 C 0.009 3.991 10 C -0.499 4.499 11 H 0.044 0.956 12 C 0.025 3.975 13 N -0.910 5.910 14 Si 0.948 3.052 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.280 1.280 18 C -0.184 4.184 19 C -0.151 4.151 20 C -0.161 4.161 21 C 0.098 3.902 22 H 0.078 0.922 23 N -0.841 5.841 24 C -0.092 4.092 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.021 0.979 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.346 0.654 43 H 0.345 0.655 44 H 0.065 0.935 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 -0.705 -15.301 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.055 4.055 3 C -0.204 4.204 4 C -0.138 4.138 5 C 0.025 3.975 6 H 0.066 0.934 7 O -0.309 6.309 8 C 0.052 3.948 9 C 0.009 3.991 10 C -0.537 4.537 11 H 0.063 0.937 12 C -0.175 4.175 13 N -0.548 5.548 14 Si 0.774 3.226 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.206 1.206 18 C -0.221 4.221 19 C -0.188 4.188 20 C -0.201 4.201 21 C -0.014 4.014 22 H 0.096 0.904 23 N -0.370 5.370 24 C -0.130 4.130 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.083 0.917 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.138 -0.111 -15.571 17.130 hybrid contribution 0.534 -0.245 1.940 2.027 sum -6.604 -0.356 -13.631 15.151 Atomic orbital electron populations 1.21809 0.92890 1.02268 1.02374 1.20449 0.96484 0.95201 0.93391 1.22007 1.00852 0.95330 1.02248 1.21629 0.92876 1.01063 0.98253 1.22181 0.95258 0.94927 0.85155 0.93421 1.87941 1.37556 1.60959 1.44461 1.21785 0.83648 0.96201 0.93177 1.18927 0.92482 0.94241 0.93489 1.20615 1.14908 1.10456 1.07673 0.93739 1.25637 0.96228 0.94983 1.00656 1.70105 1.35582 1.11553 1.37535 0.85659 0.78849 0.77938 0.80165 1.19531 1.20239 1.20619 1.22935 1.06571 0.92317 1.00271 1.22441 0.94388 1.02384 0.99623 1.22829 1.00295 1.00711 0.96255 1.21391 0.95864 0.97813 0.86293 0.90371 1.59019 1.14379 1.24115 1.39457 1.21548 0.93407 1.00870 0.97180 0.92914 0.90897 0.92278 0.93186 0.90765 0.93255 0.91773 0.93101 0.96095 0.95483 0.93078 0.90478 0.89434 0.90427 0.91723 0.92953 0.91759 0.84158 0.84225 0.91666 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.47 71.98 0.61 -1.92 16 2 C -0.05 -1.20 0.77 -52.18 -0.04 -1.24 16 3 C -0.15 -3.24 7.78 71.98 0.56 -2.68 16 4 C -0.10 -3.00 4.38 30.59 0.13 -2.86 16 5 C 0.08 2.83 2.34 30.59 0.07 2.90 16 6 H 0.05 1.68 6.07 -2.38 -0.01 1.67 16 7 O -0.39 -17.41 9.92 -148.98 -1.48 -18.89 16 8 C 0.13 6.11 5.57 71.98 0.40 6.51 16 9 C 0.01 0.46 1.60 -52.93 -0.08 0.38 16 10 C -0.50 -28.56 8.76 25.60 0.22 -28.34 16 11 H 0.04 2.62 7.82 -2.91 -0.02 2.59 16 12 C 0.02 1.39 5.39 84.65 0.46 1.85 16 13 N -0.91 -52.70 12.94 21.45 0.28 -52.42 16 14 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 C -0.18 -8.21 9.96 30.62 0.30 -7.91 16 19 C -0.15 -7.20 9.44 30.62 0.29 -6.91 16 20 C -0.16 -4.42 5.11 30.59 0.16 -4.26 16 21 C 0.10 2.13 2.97 44.92 0.13 2.26 16 22 H 0.08 1.79 6.43 -2.39 -0.02 1.78 16 23 N -0.84 -15.39 9.25 -168.68 -1.56 -16.96 16 24 C -0.09 -1.82 4.27 30.59 0.13 -1.69 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.19 4.81 -2.39 -0.01 1.18 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.02 1.10 8.08 -2.39 -0.02 1.08 16 34 H 0.03 1.17 7.82 -2.39 -0.02 1.15 16 35 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.08 3.41 8.14 -2.39 -0.02 3.40 16 37 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 38 H 0.08 3.39 8.14 -2.39 -0.02 3.38 16 39 H 0.06 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.05 1.50 7.87 -2.39 -0.02 1.48 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.35 5.81 9.04 -89.70 -0.81 5.00 16 43 H 0.34 5.58 8.98 -89.70 -0.81 4.77 16 44 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -62.15 349.00 1.95 -60.20 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.66 Total: 25.37 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 3.35 Total: -43.91 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -1.28 Total: -69.37 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.48 Total: -18.89 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -62.15 1.95 -60.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694611735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.914 kcal (2) G-P(sol) polarization free energy of solvation -62.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds