Wall clock time and date at job start Mon Mar 30 2020 07:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46753 * 2 1 4 4 C 1.53002 * 109.47080 * 119.99480 * 2 1 3 5 5 C 1.52995 * 109.46898 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47711 * 60.00065 * 5 4 2 7 7 N 1.46905 * 109.47047 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47260 * 299.99641 * 5 4 2 9 9 C 1.53002 * 109.46733 * 59.99976 * 8 5 4 10 10 H 1.09010 * 109.46900 * 60.00177 * 9 8 5 11 11 O 1.42900 * 109.47032 * 179.97438 * 9 8 5 12 12 C 1.42896 * 114.00277 * 270.00144 * 11 9 8 13 13 C 1.53004 * 109.46902 * 179.97438 * 12 11 9 14 14 C 1.50699 * 115.55087 * 39.90080 * 13 12 11 15 15 H 1.07999 * 119.99563 * 264.95130 * 14 13 12 16 16 C 1.37875 * 120.00450 * 84.94210 * 14 13 12 17 17 N 1.31511 * 119.99653 * 358.60449 * 16 14 13 18 18 Si 1.86804 * 120.00126 * 178.59715 * 16 14 13 19 19 H 1.48498 * 109.46887 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46720 * 120.00420 * 18 16 14 21 21 H 1.48497 * 109.47047 * 240.00271 * 18 16 14 22 22 C 1.52998 * 117.50076 * 254.18428 * 13 12 11 23 23 C 1.52995 * 60.00129 * 252.51346 * 22 13 12 24 24 C 1.52994 * 109.47104 * 239.99743 * 2 1 3 25 25 H 1.09000 * 109.47052 * 300.00078 * 1 2 3 26 26 H 1.09001 * 109.47010 * 60.00580 * 1 2 3 27 27 H 1.08997 * 109.46617 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46950 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46889 * 299.99494 * 3 2 1 30 30 H 1.08998 * 109.47718 * 59.99707 * 3 2 1 31 31 H 1.08998 * 109.46886 * 59.99959 * 4 2 1 32 32 H 1.08998 * 109.47030 * 300.00072 * 4 2 1 33 33 H 1.00900 * 111.00027 * 179.97438 * 7 5 4 34 34 H 1.00898 * 110.99778 * 303.95242 * 7 5 4 35 35 H 1.09000 * 109.47326 * 180.02562 * 8 5 4 36 36 H 1.08998 * 109.47106 * 300.00795 * 8 5 4 37 37 H 1.08997 * 109.47320 * 300.00024 * 12 11 9 38 38 H 1.09006 * 109.46901 * 60.00595 * 12 11 9 39 39 H 0.97002 * 119.99935 * 179.97438 * 17 16 14 40 40 H 1.08997 * 117.50033 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.49719 * 145.02196 * 22 13 12 42 42 H 1.09004 * 117.50094 * 252.50781 * 23 22 13 43 43 H 1.08999 * 117.50247 * 107.49175 * 23 22 13 44 44 H 1.08997 * 109.47075 * 299.99342 * 24 2 1 45 45 H 1.09001 * 109.47451 * 59.99947 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5700 -0.7206 1.2496 6 1 3.9331 0.3072 1.2497 7 7 4.0597 -1.4135 2.4488 8 6 4.0806 -1.4416 0.0004 9 6 3.5705 -0.7205 -1.2489 10 1 3.9335 0.3074 -1.2487 11 8 4.0478 -1.3936 -2.4156 12 6 5.3072 -0.9129 -2.8896 13 6 5.7183 -1.7016 -4.1346 14 6 4.6055 -2.0179 -5.1004 15 1 4.0956 -2.9683 -5.0441 16 6 4.2383 -1.0941 -6.0557 17 7 4.8405 0.0740 -6.1065 18 14 2.8856 -1.5015 -7.2778 19 1 2.3720 -2.8689 -7.0100 20 1 1.7792 -0.5211 -7.1366 21 1 3.4299 -1.4382 -8.6580 22 6 6.8346 -2.7362 -3.9788 23 6 7.1045 -1.4253 -4.7201 24 6 2.0401 -0.7213 -1.2492 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7488 1.2494 32 1 1.6767 -0.2072 2.1392 33 1 5.0684 -1.4270 2.4721 34 1 3.6839 -0.9955 3.2867 35 1 5.1706 -1.4416 0.0009 36 1 3.7175 -2.4694 0.0003 37 1 5.2215 0.1443 -3.1407 38 1 6.0611 -1.0420 -2.1129 39 1 4.5824 0.7238 -6.7788 40 1 7.2759 -2.8553 -2.9893 41 1 6.7642 -3.6461 -4.5748 42 1 7.2118 -1.4728 -5.8038 43 1 7.7237 -0.6817 -4.2184 44 1 1.6768 -1.7489 -1.2490 45 1 1.6767 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694611737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:57 Heat of formation + Delta-G solvation = -45.262894 kcal Electronic energy + Delta-G solvation = -21767.865182 eV Core-core repulsion = 18785.031850 eV Total energy + Delta-G solvation = -2982.833332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.74642 -37.15309 -35.42671 -34.57056 -31.80765 -30.70987 -28.16152 -27.32318 -26.33858 -25.93925 -24.86131 -21.53370 -21.03368 -20.65024 -19.16128 -18.29693 -16.29370 -15.78417 -15.63557 -15.20594 -14.82153 -14.51989 -14.38218 -13.91506 -13.74268 -13.62734 -13.14443 -12.89440 -12.36616 -12.23418 -11.92050 -11.83794 -11.45027 -11.37802 -11.27474 -11.02338 -10.89884 -10.76186 -10.64506 -10.43418 -10.30358 -10.24427 -10.10267 -9.79791 -9.35688 -8.90715 -8.70625 -8.55925 -8.31946 -7.95009 -5.92644 -3.94595 3.35232 3.42889 3.48701 4.27434 4.40721 4.51538 4.74126 4.94876 5.08584 5.16873 5.32348 5.37918 5.40253 5.43464 5.53786 5.61406 5.63912 5.72744 5.74687 5.80896 5.89054 6.00058 6.09810 6.12513 6.21647 6.25406 6.27143 6.36167 6.38651 6.44165 6.47277 6.63158 6.65652 6.76325 6.79008 6.94221 7.11243 7.12693 7.36919 7.46134 7.54764 8.00337 8.28810 8.60835 9.04797 9.69010 11.17545 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.005917 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.228587 B = 4731.225548 C = 5702.020248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 C -0.147 4.147 4 C -0.099 4.099 5 C 0.092 3.908 6 H 0.036 0.964 7 N -0.848 5.848 8 C -0.131 4.131 9 C 0.089 3.911 10 H 0.051 0.949 11 O -0.351 6.351 12 C 0.112 3.888 13 C 0.043 3.957 14 C -0.468 4.468 15 H 0.060 0.940 16 C 0.068 3.932 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.286 1.286 22 C -0.211 4.211 23 C -0.151 4.151 24 C -0.103 4.103 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.340 0.660 34 H 0.337 0.663 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.012 0.988 39 H 0.256 0.744 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 2.307 14.816 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.204 4.204 4 C -0.136 4.136 5 C -0.019 4.019 6 H 0.053 0.947 7 N -0.377 5.377 8 C -0.170 4.170 9 C 0.029 3.971 10 H 0.069 0.931 11 O -0.269 6.269 12 C 0.035 3.965 13 C 0.042 3.958 14 C -0.506 4.506 15 H 0.078 0.922 16 C -0.134 4.134 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.249 4.249 23 C -0.189 4.189 24 C -0.141 4.141 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.030 0.970 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.498 1.687 14.313 15.097 hybrid contribution 0.009 1.098 -0.293 1.136 sum -4.489 2.784 14.019 14.981 Atomic orbital electron populations 1.21828 0.94358 1.01845 1.01533 1.20487 0.95392 0.95325 0.94997 1.22011 1.01430 0.95469 1.01520 1.21594 0.94168 1.01109 0.96778 1.21356 0.95241 0.94944 0.90369 0.94651 1.58701 1.13709 1.61022 1.04301 1.22063 1.00333 1.01164 0.93406 1.21907 0.94081 0.95036 0.86048 0.93098 1.88091 1.37538 1.59651 1.41598 1.22058 0.83072 0.97601 0.93741 1.18770 0.88660 0.95148 0.93198 1.20326 1.16004 1.01651 1.12626 0.92206 1.24930 0.96173 0.94971 0.97300 1.70012 1.41729 1.06073 1.34811 0.86581 0.82168 0.78549 0.80995 1.19700 1.21137 1.21243 1.23066 1.08045 0.94221 0.99524 1.22492 1.01048 0.96310 0.99027 1.21610 0.94399 1.01208 0.96889 0.92947 0.92422 0.92535 0.92240 0.92359 0.93102 0.91029 0.92547 0.84760 0.85138 0.92454 0.90559 0.93795 0.97027 0.93395 0.91849 0.90404 0.89696 0.92107 0.91169 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.47 37.16 0.31 -1.18 16 2 C -0.06 -0.75 0.77 -154.51 -0.12 -0.87 16 3 C -0.15 -1.73 7.78 37.16 0.29 -1.44 16 4 C -0.10 -1.14 4.27 -26.73 -0.11 -1.25 16 5 C 0.09 1.12 2.97 -67.71 -0.20 0.92 16 6 H 0.04 0.43 6.43 -51.93 -0.33 0.09 16 7 N -0.85 -9.01 9.25 -4.66 -0.04 -9.06 16 8 C -0.13 -2.01 5.11 -26.73 -0.14 -2.15 16 9 C 0.09 1.56 2.34 -26.71 -0.06 1.49 16 10 H 0.05 0.89 6.07 -51.92 -0.32 0.57 16 11 O -0.35 -7.97 9.37 -35.23 -0.33 -8.30 16 12 C 0.11 2.62 5.81 37.16 0.22 2.83 16 13 C 0.04 1.09 1.81 -155.66 -0.28 0.81 16 14 C -0.47 -13.22 8.24 -34.44 -0.28 -13.51 16 15 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.07 1.91 5.41 -17.82 -0.10 1.81 16 17 N -0.89 -25.60 12.80 55.43 0.71 -24.89 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.21 -4.80 9.88 -26.73 -0.26 -5.06 16 23 C -0.15 -3.63 9.33 -26.73 -0.25 -3.88 16 24 C -0.10 -1.63 4.39 -26.71 -0.12 -1.75 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.34 3.30 9.04 -39.29 -0.36 2.95 16 34 H 0.34 2.90 8.99 -39.29 -0.35 2.55 16 35 H 0.06 0.89 7.87 -51.93 -0.41 0.49 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.04 1.09 8.08 -51.93 -0.42 0.67 16 38 H 0.01 0.25 7.68 -51.93 -0.40 -0.15 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 41 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 347.87 15.07 5.24 5.24 Total: -1.00 -29.55 347.87 -8.84 -38.39 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -8.29 Total: 5.05 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -1.11 Total: -23.24 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.67 Total: -33.95 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.33 Total: -8.30 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.55 -8.84 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694611737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.868 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds