Wall clock time and date at job start Mon Mar 30 2020 07:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 109.47305 * 2 1 4 4 C 1.53003 * 109.47271 * 239.99552 * 2 1 3 5 5 C 1.52994 * 109.47185 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47365 * 180.02562 * 5 4 2 7 7 N 1.46904 * 109.46988 * 300.00229 * 5 4 2 8 8 C 1.52997 * 109.47347 * 59.99767 * 5 4 2 9 9 C 1.52992 * 109.47504 * 300.00200 * 8 5 4 10 10 H 1.08995 * 109.47379 * 299.99938 * 9 8 5 11 11 O 1.42901 * 109.47457 * 179.97438 * 9 8 5 12 12 C 1.42899 * 113.99731 * 90.00085 * 11 9 8 13 13 C 1.52997 * 109.47053 * 180.02562 * 12 11 9 14 14 C 1.50698 * 115.56421 * 39.62809 * 13 12 11 15 15 H 1.08000 * 120.00221 * 260.48130 * 14 13 12 16 16 C 1.37878 * 119.99896 * 80.47994 * 14 13 12 17 17 N 1.31512 * 119.99901 * 352.21667 * 16 14 13 18 18 Si 1.86796 * 120.00234 * 172.21604 * 16 14 13 19 19 H 1.48507 * 109.46956 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47004 * 119.99600 * 18 16 14 21 21 H 1.48494 * 109.47535 * 240.00116 * 18 16 14 22 22 C 1.53003 * 117.49835 * 185.32193 * 13 12 11 23 23 C 1.52999 * 60.03211 * 107.49997 * 22 13 12 24 24 C 1.53001 * 109.46786 * 119.99935 * 2 1 3 25 25 H 1.08996 * 109.47451 * 300.00302 * 1 2 3 26 26 H 1.09003 * 109.46974 * 60.00135 * 1 2 3 27 27 H 1.09002 * 109.47624 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47565 * 168.38796 * 3 2 1 29 29 H 1.08999 * 109.47264 * 288.38917 * 3 2 1 30 30 H 1.09002 * 109.47108 * 48.38397 * 3 2 1 31 31 H 1.09002 * 109.47070 * 300.00675 * 4 2 1 32 32 H 1.09003 * 109.46865 * 60.00247 * 4 2 1 33 33 H 1.00901 * 110.99970 * 180.02562 * 7 5 4 34 34 H 1.00897 * 110.99767 * 303.95174 * 7 5 4 35 35 H 1.09004 * 109.47190 * 179.97438 * 8 5 4 36 36 H 1.09002 * 109.46970 * 60.00230 * 8 5 4 37 37 H 1.08993 * 109.47244 * 60.00409 * 12 11 9 38 38 H 1.08998 * 109.47347 * 300.00380 * 12 11 9 39 39 H 0.97005 * 120.00363 * 180.02562 * 17 16 14 40 40 H 1.09000 * 117.50049 * 359.97438 * 22 13 12 41 41 H 1.09000 * 117.49474 * 215.00015 * 22 13 12 42 42 H 1.09006 * 117.50213 * 107.47856 * 23 22 13 43 43 H 1.08999 * 117.49770 * 252.47174 * 23 22 13 44 44 H 1.09002 * 109.47479 * 59.99978 * 24 2 1 45 45 H 1.09004 * 109.47339 * 299.99562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 1 3.9333 -1.2354 -2.1390 7 7 4.0601 0.6630 -1.2486 8 6 4.0795 -1.4433 0.0004 9 6 3.5695 -0.7221 1.2496 10 1 3.9331 0.3054 1.2498 11 8 4.0449 -1.3963 2.4164 12 6 5.3047 -0.9175 2.8916 13 6 5.7137 -1.7071 4.1365 14 6 5.4161 -3.1839 4.0968 15 1 4.5407 -3.5720 4.5962 16 6 6.2615 -4.0396 3.4229 17 7 7.2390 -3.5551 2.6886 18 14 6.0184 -5.8871 3.5529 19 1 4.8578 -6.1729 4.4343 20 1 5.7648 -6.4492 2.2020 21 1 7.2393 -6.5080 4.1262 22 6 6.9791 -1.2610 4.8719 23 6 5.6040 -1.0003 5.4899 24 6 2.0399 -0.7213 1.2493 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1101 1.4494 0.2068 29 1 1.8555 1.8930 -0.9752 30 1 1.5176 2.0125 0.7683 31 1 1.6766 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 5.0688 0.6895 -1.2488 34 1 3.6850 1.1794 -2.0300 35 1 5.1695 -1.4441 0.0004 36 1 3.7158 -2.4709 0.0003 37 1 5.2202 0.1397 3.1430 38 1 6.0589 -1.0471 2.1154 39 1 7.8336 -4.1571 2.2142 40 1 7.5204 -0.4052 4.4685 41 1 7.5965 -2.0357 5.3266 42 1 5.3165 -1.6038 6.3510 43 1 5.2405 0.0273 5.4937 44 1 1.6766 -1.7489 1.2493 45 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694611740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:00 Heat of formation + Delta-G solvation = -30.953617 kcal Electronic energy + Delta-G solvation = -22044.168024 eV Core-core repulsion = 19061.955189 eV Total energy + Delta-G solvation = -2982.212835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.75870 -37.07123 -35.33014 -34.04998 -31.81020 -30.53939 -28.59601 -26.79846 -26.14963 -25.80352 -24.81061 -21.64540 -21.03109 -20.29262 -19.10929 -18.07968 -16.24154 -15.88409 -15.65410 -14.80726 -14.62641 -14.44574 -14.20390 -13.88976 -13.69560 -13.40215 -12.94238 -12.61040 -12.31589 -12.12983 -11.85349 -11.65147 -11.37610 -11.29023 -11.20983 -10.92093 -10.86947 -10.72696 -10.45916 -10.38941 -10.20927 -10.15263 -10.01313 -9.58787 -9.35830 -8.79806 -8.51757 -8.30494 -8.16533 -7.88324 -5.91837 -3.91342 3.35539 3.43286 3.48839 4.48356 4.55053 4.57905 4.88830 4.97904 5.17329 5.38377 5.39282 5.41999 5.53389 5.58672 5.64375 5.79836 5.85055 5.89546 5.96637 5.99120 6.08991 6.13025 6.22931 6.24474 6.31572 6.37362 6.46586 6.48141 6.56024 6.62417 6.68880 6.79088 6.80141 6.87843 7.01832 7.05032 7.12956 7.21600 7.48301 7.49707 7.54378 8.02182 8.41284 8.67257 9.06505 9.71107 11.18872 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.005774 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.531466 B = 4848.511587 C = 5220.904723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C -0.148 4.148 4 C -0.102 4.102 5 C 0.092 3.908 6 H 0.031 0.969 7 N -0.833 5.833 8 C -0.130 4.130 9 C 0.095 3.905 10 H 0.064 0.936 11 O -0.357 6.357 12 C 0.115 3.885 13 C 0.047 3.953 14 C -0.468 4.468 15 H 0.059 0.941 16 C 0.070 3.930 17 N -0.885 5.885 18 Si 0.886 3.114 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 C -0.162 4.162 23 C -0.211 4.211 24 C -0.101 4.101 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.336 0.664 34 H 0.336 0.664 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.009 0.991 38 H 0.047 0.953 39 H 0.255 0.745 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 8.623 -8.888 14.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 C -0.206 4.206 4 C -0.140 4.140 5 C -0.019 4.019 6 H 0.049 0.951 7 N -0.364 5.364 8 C -0.169 4.169 9 C 0.037 3.963 10 H 0.081 0.919 11 O -0.276 6.276 12 C 0.039 3.961 13 C 0.047 3.953 14 C -0.506 4.506 15 H 0.077 0.923 16 C -0.131 4.131 17 N -0.523 5.523 18 Si 0.714 3.286 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.212 1.212 22 C -0.199 4.199 23 C -0.248 4.248 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.027 0.973 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.444 8.454 -8.213 14.499 hybrid contribution 0.580 -1.141 -1.161 1.728 sum -7.864 7.314 -9.374 14.255 Atomic orbital electron populations 1.21895 0.95491 1.01276 1.01194 1.20348 0.94019 0.96510 0.94322 1.22368 1.05334 0.93400 0.99453 1.21666 0.94379 1.00419 0.97489 1.21322 0.94928 0.88669 0.96939 0.95065 1.59341 1.13443 1.13701 1.49869 1.22014 1.01157 0.99597 0.94110 1.21815 0.93285 0.95525 0.85702 0.91852 1.88054 1.37034 1.60394 1.42099 1.21966 0.84608 0.92632 0.96908 1.18797 0.95891 0.94416 0.86245 1.20307 1.08774 0.88912 1.32644 0.92281 1.24891 0.95323 0.98173 0.94748 1.70013 1.18122 1.34168 1.30001 0.86629 0.77909 0.86289 0.77734 1.19755 1.21255 1.21216 1.22566 0.90613 1.01104 1.05630 1.23050 1.02355 0.99250 1.00149 1.21556 0.94943 1.00495 0.96854 0.92804 0.93216 0.93060 0.87164 0.94263 0.95128 0.91709 0.92643 0.85089 0.85171 0.91705 0.91162 0.97270 0.93496 0.93484 0.91960 0.90046 0.90447 0.91705 0.91890 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.44 37.16 0.31 -1.27 16 2 C -0.05 -0.66 0.77 -154.51 -0.12 -0.77 16 3 C -0.15 -1.82 7.05 37.15 0.26 -1.55 16 4 C -0.10 -1.21 4.50 -26.73 -0.12 -1.33 16 5 C 0.09 1.18 3.57 -67.72 -0.24 0.94 16 6 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 7 N -0.83 -9.06 4.93 -4.67 -0.02 -9.08 16 8 C -0.13 -2.21 5.22 -26.74 -0.14 -2.35 16 9 C 0.10 1.72 2.27 -26.76 -0.06 1.66 16 10 H 0.06 1.12 5.55 -51.93 -0.29 0.84 16 11 O -0.36 -8.30 9.37 -35.23 -0.33 -8.63 16 12 C 0.12 2.74 5.82 37.16 0.22 2.96 16 13 C 0.05 1.20 1.70 -155.62 -0.26 0.94 16 14 C -0.47 -13.26 8.20 -34.44 -0.28 -13.54 16 15 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 16 C 0.07 1.98 5.41 -17.82 -0.10 1.88 16 17 N -0.89 -25.40 13.17 55.43 0.73 -24.67 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.16 -3.86 9.76 -26.73 -0.26 -4.12 16 23 C -0.21 -4.79 9.88 -26.69 -0.26 -5.05 16 24 C -0.10 -1.60 4.38 -26.75 -0.12 -1.72 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.11 1.48 3.69 -51.93 -0.19 1.29 16 29 H 0.04 0.43 7.72 -51.93 -0.40 0.02 16 30 H 0.03 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.34 3.57 9.04 -39.29 -0.36 3.21 16 34 H 0.34 2.97 8.53 -39.29 -0.34 2.64 16 35 H 0.06 1.21 7.87 -51.93 -0.41 0.81 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.01 0.20 7.89 -51.93 -0.41 -0.21 16 38 H 0.05 1.18 7.87 -51.93 -0.41 0.77 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 42 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 43 H 0.06 1.33 8.09 -51.93 -0.42 0.91 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -29.24 343.49 -8.90 -38.14 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -8.26 Total: 5.60 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -1.17 Total: -23.34 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.71 Total: -33.75 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.33 Total: -8.63 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.24 -8.90 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694611740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.185 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds