Wall clock time and date at job start Mon Mar 30 2020 07:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 109.47305 * 2 1 4 4 C 1.53003 * 109.47271 * 239.99552 * 2 1 3 5 5 C 1.52994 * 109.47185 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47365 * 180.02562 * 5 4 2 7 7 N 1.46904 * 109.46988 * 300.00229 * 5 4 2 8 8 C 1.52997 * 109.47347 * 59.99767 * 5 4 2 9 9 C 1.52992 * 109.47504 * 300.00200 * 8 5 4 10 10 H 1.08995 * 109.47379 * 299.99938 * 9 8 5 11 11 O 1.42901 * 109.47457 * 179.97438 * 9 8 5 12 12 C 1.42899 * 113.99731 * 90.00085 * 11 9 8 13 13 C 1.52997 * 109.47053 * 180.02562 * 12 11 9 14 14 C 1.50698 * 115.56421 * 39.62809 * 13 12 11 15 15 H 1.08000 * 120.00221 * 260.48130 * 14 13 12 16 16 C 1.37878 * 119.99896 * 80.47994 * 14 13 12 17 17 N 1.31512 * 119.99901 * 352.21667 * 16 14 13 18 18 Si 1.86796 * 120.00234 * 172.21604 * 16 14 13 19 19 H 1.48507 * 109.46956 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47004 * 119.99600 * 18 16 14 21 21 H 1.48494 * 109.47535 * 240.00116 * 18 16 14 22 22 C 1.53003 * 117.49835 * 185.32193 * 13 12 11 23 23 C 1.52999 * 60.03211 * 107.49997 * 22 13 12 24 24 C 1.53001 * 109.46786 * 119.99935 * 2 1 3 25 25 H 1.08996 * 109.47451 * 300.00302 * 1 2 3 26 26 H 1.09003 * 109.46974 * 60.00135 * 1 2 3 27 27 H 1.09002 * 109.47624 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47565 * 168.38796 * 3 2 1 29 29 H 1.08999 * 109.47264 * 288.38917 * 3 2 1 30 30 H 1.09002 * 109.47108 * 48.38397 * 3 2 1 31 31 H 1.09002 * 109.47070 * 300.00675 * 4 2 1 32 32 H 1.09003 * 109.46865 * 60.00247 * 4 2 1 33 33 H 1.00901 * 110.99970 * 180.02562 * 7 5 4 34 34 H 1.00897 * 110.99767 * 303.95174 * 7 5 4 35 35 H 1.09004 * 109.47190 * 179.97438 * 8 5 4 36 36 H 1.09002 * 109.46970 * 60.00230 * 8 5 4 37 37 H 1.08993 * 109.47244 * 60.00409 * 12 11 9 38 38 H 1.08998 * 109.47347 * 300.00380 * 12 11 9 39 39 H 0.97005 * 120.00363 * 180.02562 * 17 16 14 40 40 H 1.09000 * 117.50049 * 359.97438 * 22 13 12 41 41 H 1.09000 * 117.49474 * 215.00015 * 22 13 12 42 42 H 1.09006 * 117.50213 * 107.47856 * 23 22 13 43 43 H 1.08999 * 117.49770 * 252.47174 * 23 22 13 44 44 H 1.09002 * 109.47479 * 59.99978 * 24 2 1 45 45 H 1.09004 * 109.47339 * 299.99562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 1 3.9333 -1.2354 -2.1390 7 7 4.0601 0.6630 -1.2486 8 6 4.0795 -1.4433 0.0004 9 6 3.5695 -0.7221 1.2496 10 1 3.9331 0.3054 1.2498 11 8 4.0449 -1.3963 2.4164 12 6 5.3047 -0.9175 2.8916 13 6 5.7137 -1.7071 4.1365 14 6 5.4161 -3.1839 4.0968 15 1 4.5407 -3.5720 4.5962 16 6 6.2615 -4.0396 3.4229 17 7 7.2390 -3.5551 2.6886 18 14 6.0184 -5.8871 3.5529 19 1 4.8578 -6.1729 4.4343 20 1 5.7648 -6.4492 2.2020 21 1 7.2393 -6.5080 4.1262 22 6 6.9791 -1.2610 4.8719 23 6 5.6040 -1.0003 5.4899 24 6 2.0399 -0.7213 1.2493 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1101 1.4494 0.2068 29 1 1.8555 1.8930 -0.9752 30 1 1.5176 2.0125 0.7683 31 1 1.6766 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 5.0688 0.6895 -1.2488 34 1 3.6850 1.1794 -2.0300 35 1 5.1695 -1.4441 0.0004 36 1 3.7158 -2.4709 0.0003 37 1 5.2202 0.1397 3.1430 38 1 6.0589 -1.0471 2.1154 39 1 7.8336 -4.1571 2.2142 40 1 7.5204 -0.4052 4.4685 41 1 7.5965 -2.0357 5.3266 42 1 5.3165 -1.6038 6.3510 43 1 5.2405 0.0273 5.4937 44 1 1.6766 -1.7489 1.2493 45 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694611740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:59 Heat of formation + Delta-G solvation = -47.677934 kcal Electronic energy + Delta-G solvation = -22044.893245 eV Core-core repulsion = 19061.955189 eV Total energy + Delta-G solvation = -2982.938055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96180 -38.84581 -37.05790 -35.06800 -33.95737 -31.86949 -29.66283 -27.90902 -27.69460 -27.27007 -26.74180 -23.02333 -22.80342 -21.46235 -21.08028 -19.26119 -18.13475 -17.34137 -16.79821 -16.65884 -16.13852 -15.88642 -15.56754 -15.34923 -15.16097 -14.58576 -14.50317 -14.08685 -13.80269 -13.36284 -13.25928 -12.97442 -12.92291 -12.83826 -12.69089 -12.49218 -12.34786 -12.27017 -12.11871 -11.93430 -11.67853 -11.46267 -11.27638 -11.10476 -10.93900 -10.75190 -10.40838 -10.23987 -9.79254 -9.10775 -8.06933 -6.12045 1.37673 1.39956 1.51074 2.45071 3.00813 3.23576 3.51905 3.59682 3.79169 3.91431 4.09850 4.23714 4.28343 4.41343 4.41898 4.46731 4.53612 4.59933 4.64822 4.66903 4.81336 4.86019 4.92706 4.96521 4.98288 5.05743 5.08626 5.11056 5.17470 5.20527 5.22496 5.29535 5.37949 5.47577 5.56373 5.60126 5.60812 5.63425 5.82447 6.03830 6.28876 6.42753 6.69660 6.80726 6.94599 7.52595 9.02908 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.005774 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.531466 B = 4848.511587 C = 5220.904723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C -0.144 4.144 4 C -0.099 4.099 5 C 0.103 3.897 6 H 0.040 0.960 7 N -0.831 5.831 8 C -0.126 4.126 9 C 0.092 3.908 10 H 0.070 0.930 11 O -0.388 6.388 12 C 0.131 3.869 13 C 0.008 3.992 14 C -0.485 4.485 15 H 0.041 0.959 16 C 0.028 3.972 17 N -0.907 5.907 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.278 1.278 22 C -0.159 4.159 23 C -0.188 4.188 24 C -0.097 4.097 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.338 0.662 34 H 0.353 0.647 35 H 0.038 0.962 36 H 0.046 0.954 37 H 0.029 0.971 38 H 0.022 0.978 39 H 0.256 0.744 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 9.819 -9.965 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 C -0.201 4.201 4 C -0.137 4.137 5 C -0.009 4.009 6 H 0.058 0.942 7 N -0.364 5.364 8 C -0.164 4.164 9 C 0.034 3.966 10 H 0.088 0.912 11 O -0.307 6.307 12 C 0.054 3.946 13 C 0.008 3.992 14 C -0.523 4.523 15 H 0.060 0.940 16 C -0.171 4.171 17 N -0.546 5.546 18 Si 0.768 3.232 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.203 1.203 22 C -0.197 4.197 23 C -0.225 4.225 24 C -0.135 4.135 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.151 0.849 34 H 0.167 0.833 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.066 0.934 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.609 9.663 -9.295 16.495 hybrid contribution 0.926 -1.495 -0.806 1.935 sum -8.683 8.168 -10.101 15.625 Atomic orbital electron populations 1.21864 0.93989 1.01548 1.02164 1.20340 0.95156 0.96496 0.92753 1.22310 1.04401 0.92872 1.00547 1.21669 0.93334 1.00500 0.98189 1.21144 0.95662 0.89386 0.94667 0.94213 1.59250 1.13746 1.12486 1.50884 1.21926 0.99396 0.98953 0.96128 1.22063 0.94674 0.95420 0.84399 0.91209 1.88003 1.36651 1.61835 1.44259 1.21688 0.84341 0.93224 0.95370 1.18996 0.97869 0.93878 0.88478 1.20471 1.08302 0.90869 1.32619 0.94048 1.25516 0.95229 1.01892 0.94499 1.70101 1.18699 1.35307 1.30486 0.85762 0.77997 0.81786 0.77655 1.19643 1.21016 1.20337 1.22490 0.90666 1.01073 1.05426 1.23065 1.00854 1.00257 0.98348 1.21574 0.93154 1.00081 0.98694 0.92879 0.91215 0.93200 0.88375 0.92233 0.95349 0.92226 0.89844 0.84876 0.83268 0.94348 0.93503 0.95332 0.96008 0.93454 0.90336 0.91849 0.90422 0.89007 0.93438 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.44 71.98 0.61 -2.14 16 2 C -0.05 -1.10 0.77 -52.18 -0.04 -1.14 16 3 C -0.14 -3.14 7.05 71.98 0.51 -2.63 16 4 C -0.10 -2.13 4.50 30.59 0.14 -1.99 16 5 C 0.10 2.49 3.57 44.91 0.16 2.65 16 6 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 7 N -0.83 -16.39 4.93 -168.69 -0.83 -17.23 16 8 C -0.13 -4.37 5.22 30.59 0.16 -4.21 16 9 C 0.09 3.37 2.27 30.58 0.07 3.44 16 10 H 0.07 2.46 5.55 -2.39 -0.01 2.45 16 11 O -0.39 -18.52 9.37 -148.98 -1.40 -19.92 16 12 C 0.13 6.29 5.82 71.98 0.42 6.71 16 13 C 0.01 0.42 1.70 -52.90 -0.09 0.33 16 14 C -0.48 -28.05 8.20 25.60 0.21 -27.84 16 15 H 0.04 2.47 7.83 -2.91 -0.02 2.44 16 16 C 0.03 1.60 5.41 84.66 0.46 2.06 16 17 N -0.91 -53.13 13.17 21.45 0.28 -52.85 16 18 Si 0.94 45.51 29.54 68.60 2.03 47.53 16 19 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 C -0.16 -7.57 9.76 30.59 0.30 -7.27 16 23 C -0.19 -8.36 9.88 30.62 0.30 -8.06 16 24 C -0.10 -3.07 4.38 30.58 0.13 -2.94 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 2.42 3.69 -2.39 -0.01 2.41 16 29 H 0.06 1.06 7.72 -2.39 -0.02 1.04 16 30 H 0.03 0.62 8.10 -2.39 -0.02 0.60 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.34 6.72 9.04 -89.69 -0.81 5.91 16 34 H 0.35 5.08 8.53 -89.70 -0.77 4.32 16 35 H 0.04 1.50 7.87 -2.39 -0.02 1.48 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.03 1.24 7.89 -2.39 -0.02 1.22 16 38 H 0.02 1.13 7.87 -2.39 -0.02 1.12 16 39 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 40 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.06 3.20 8.14 -2.39 -0.02 3.19 16 42 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 43 H 0.09 3.56 8.09 -2.39 -0.02 3.54 16 44 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -63.67 343.49 2.80 -60.86 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.62 Total: 24.64 kcal Atomic # 6 Polarization: -46.37 SS G_CDS: 3.34 Total: -43.04 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -0.55 Total: -70.08 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -1.40 Total: -19.92 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -63.67 2.80 -60.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694611740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.187 kcal (2) G-P(sol) polarization free energy of solvation -63.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds