Wall clock time and date at job start Mon Mar 30 2020 07:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46956 * 2 1 4 4 C 1.52995 * 109.47029 * 120.00366 * 2 1 3 5 5 C 1.53001 * 109.47357 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47242 * 179.97438 * 5 4 2 7 7 N 1.46900 * 109.47022 * 59.99484 * 5 4 2 8 8 C 1.52998 * 109.46785 * 299.99894 * 5 4 2 9 9 C 1.53000 * 109.47470 * 59.99611 * 8 5 4 10 10 H 1.08997 * 109.47006 * 60.00039 * 9 8 5 11 11 O 1.42894 * 109.47429 * 180.02562 * 9 8 5 12 12 C 1.42902 * 113.99987 * 270.00206 * 11 9 8 13 13 C 1.53005 * 109.46969 * 179.97438 * 12 11 9 14 14 C 1.50695 * 115.55283 * 39.62892 * 13 12 11 15 15 H 1.07998 * 119.99814 * 264.82851 * 14 13 12 16 16 C 1.37879 * 119.99941 * 84.82627 * 14 13 12 17 17 N 1.31515 * 120.00043 * 4.90588 * 16 14 13 18 18 Si 1.86800 * 119.99868 * 184.91190 * 16 14 13 19 19 H 1.48499 * 109.47492 * 89.99787 * 18 16 14 20 20 H 1.48503 * 109.47003 * 210.00038 * 18 16 14 21 21 H 1.48500 * 109.47018 * 329.99579 * 18 16 14 22 22 C 1.53005 * 117.49765 * 253.91698 * 13 12 11 23 23 C 1.52993 * 59.99918 * 252.51466 * 22 13 12 24 24 C 1.53001 * 109.47106 * 300.00184 * 9 8 5 25 25 H 1.08993 * 109.47441 * 299.99956 * 1 2 3 26 26 H 1.09011 * 109.47201 * 59.99978 * 1 2 3 27 27 H 1.09007 * 109.47090 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47266 * 191.57184 * 3 2 1 29 29 H 1.09005 * 109.47392 * 311.56891 * 3 2 1 30 30 H 1.09001 * 109.47452 * 71.56981 * 3 2 1 31 31 H 1.08997 * 109.47466 * 59.99910 * 4 2 1 32 32 H 1.09004 * 109.46822 * 299.99642 * 4 2 1 33 33 H 1.00899 * 110.99806 * 55.28954 * 7 5 4 34 34 H 1.00898 * 111.00238 * 179.24388 * 7 5 4 35 35 H 1.08997 * 109.47250 * 179.97438 * 8 5 4 36 36 H 1.09007 * 109.46974 * 299.99646 * 8 5 4 37 37 H 1.08994 * 109.47323 * 299.99978 * 12 11 9 38 38 H 1.08998 * 109.47051 * 60.00234 * 12 11 9 39 39 H 0.97000 * 119.99696 * 179.97438 * 17 16 14 40 40 H 1.09007 * 117.49802 * 0.02562 * 22 13 12 41 41 H 1.09004 * 117.49817 * 145.01830 * 22 13 12 42 42 H 1.09005 * 117.49607 * 252.50823 * 23 22 13 43 43 H 1.09008 * 117.51737 * 107.48868 * 23 22 13 44 44 H 1.08997 * 109.47070 * 299.99816 * 24 9 8 45 45 H 1.08998 * 109.46915 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 1 3.9333 -1.2343 2.1397 7 7 4.0592 0.6644 1.2499 8 6 4.0805 -1.4416 0.0003 9 6 3.5705 -0.7204 -1.2490 10 1 3.9334 0.3073 -1.2487 11 8 4.0467 -1.3940 -2.4157 12 6 5.3064 -0.9143 -2.8903 13 6 5.7164 -1.7035 -4.1353 14 6 4.6020 -2.0247 -5.0975 15 1 4.0966 -2.9773 -5.0398 16 6 4.2277 -1.1023 -6.0516 17 7 4.9049 0.0171 -6.1853 18 14 2.7586 -1.4426 -7.1539 19 1 1.5272 -0.9120 -6.5155 20 1 2.9607 -0.7789 -8.4670 21 1 2.6199 -2.9072 -7.3557 22 6 6.8364 -2.7345 -3.9811 23 6 7.1002 -1.4239 -4.7249 24 6 2.0405 -0.7209 -1.2493 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1103 1.4495 -0.2062 29 1 1.5182 2.0123 -0.7689 30 1 1.8548 1.8933 0.9749 31 1 1.6767 -1.7489 1.2492 32 1 1.6766 -0.2074 2.1392 33 1 3.6736 1.1838 2.0242 34 1 5.0677 0.6917 1.2626 35 1 5.1704 -1.4409 0.0003 36 1 3.7175 -2.4695 0.0001 37 1 5.2214 0.1429 -3.1415 38 1 6.0604 -1.0438 -2.1139 39 1 4.6418 0.6658 -6.8568 40 1 7.2808 -2.8508 -2.9926 41 1 6.7671 -3.6456 -4.5756 42 1 7.2047 -1.4726 -5.8089 43 1 7.7185 -0.6774 -4.2261 44 1 1.6775 -1.7487 -1.2495 45 1 1.6772 -0.2067 -2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694611743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:02 Heat of formation + Delta-G solvation = -30.657414 kcal Electronic energy + Delta-G solvation = -22007.855852 eV Core-core repulsion = 19025.655861 eV Total energy + Delta-G solvation = -2982.199990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.81533 -37.09878 -35.35911 -34.10686 -31.76458 -30.62263 -28.64589 -26.78696 -26.20746 -25.85874 -24.79316 -21.70653 -20.99254 -20.34601 -19.09706 -18.13736 -16.29534 -15.96680 -15.65837 -14.85879 -14.59054 -14.48943 -14.26281 -13.97445 -13.61422 -13.46266 -13.04995 -12.64414 -12.23361 -12.13924 -11.87325 -11.71239 -11.42750 -11.36694 -11.25060 -10.96276 -10.82328 -10.67420 -10.50908 -10.38058 -10.23882 -10.11280 -10.00547 -9.64262 -9.26294 -8.90011 -8.56800 -8.25546 -8.21091 -7.89321 -5.88510 -3.90295 3.40246 3.45930 3.49641 4.44727 4.49064 4.55816 4.82540 4.90679 5.14821 5.31656 5.38869 5.42610 5.52448 5.53951 5.57467 5.74555 5.80445 5.88511 5.91335 5.92747 6.04430 6.15387 6.19309 6.19820 6.29101 6.36357 6.42854 6.45924 6.52944 6.57609 6.67147 6.76234 6.80568 6.84826 6.99569 7.06610 7.13699 7.18032 7.40647 7.50301 7.62329 8.03814 8.38053 8.66492 9.08250 9.72819 11.21197 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.006160 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.677204 B = 4544.126748 C = 5420.618978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.149 4.149 4 C -0.102 4.102 5 C 0.094 3.906 6 H 0.031 0.969 7 N -0.833 5.833 8 C -0.133 4.133 9 C 0.093 3.907 10 H 0.068 0.932 11 O -0.358 6.358 12 C 0.114 3.886 13 C 0.042 3.958 14 C -0.469 4.469 15 H 0.058 0.942 16 C 0.069 3.931 17 N -0.887 5.887 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.275 1.275 22 C -0.213 4.213 23 C -0.148 4.148 24 C -0.101 4.101 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.338 0.662 34 H 0.335 0.665 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.011 0.989 39 H 0.257 0.743 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 1.698 15.716 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.053 4.053 3 C -0.207 4.207 4 C -0.140 4.140 5 C -0.017 4.017 6 H 0.049 0.951 7 N -0.363 5.363 8 C -0.171 4.171 9 C 0.034 3.966 10 H 0.086 0.914 11 O -0.276 6.276 12 C 0.037 3.963 13 C 0.041 3.959 14 C -0.507 4.507 15 H 0.076 0.924 16 C -0.133 4.133 17 N -0.525 5.525 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.200 1.200 22 C -0.250 4.250 23 C -0.186 4.186 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.069 1.760 14.803 15.453 hybrid contribution -0.237 -0.140 0.513 0.583 sum -4.306 1.620 15.316 15.992 Atomic orbital electron populations 1.21896 0.95422 1.01260 1.01310 1.20362 0.94141 0.96580 0.94182 1.22375 1.05406 0.93408 0.99475 1.21668 0.94138 1.00448 0.97697 1.21293 0.95190 0.88748 0.96490 0.95104 1.59321 1.12874 1.13380 1.50758 1.22073 1.00406 0.99724 0.94886 1.21862 0.93746 0.95951 0.85019 0.91396 1.88064 1.37436 1.59941 1.42158 1.22013 0.83195 0.97427 0.93621 1.18788 0.88619 0.95236 0.93245 1.20269 1.15863 1.01575 1.13007 0.92365 1.24919 0.96241 0.95227 0.96904 1.70012 1.38980 1.08981 1.34521 0.86654 0.83637 0.78307 0.79729 1.20650 1.21536 1.20009 1.23062 1.08173 0.94305 0.99480 1.22479 1.00976 0.96010 0.99106 1.21552 0.94708 1.00452 0.97142 0.93221 0.92657 0.93091 0.87168 0.94875 0.94316 0.91710 0.92562 0.84921 0.85220 0.92382 0.91245 0.93982 0.97075 0.93348 0.91977 0.90512 0.89535 0.92184 0.92026 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.45 37.16 0.31 -1.35 16 2 C -0.05 -0.68 0.77 -154.51 -0.12 -0.80 16 3 C -0.15 -1.93 7.04 37.15 0.26 -1.67 16 4 C -0.10 -1.14 4.49 -26.73 -0.12 -1.26 16 5 C 0.09 1.07 3.57 -67.71 -0.24 0.83 16 6 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 7 N -0.83 -8.40 4.95 -4.67 -0.02 -8.43 16 8 C -0.13 -1.95 5.23 -26.73 -0.14 -2.09 16 9 C 0.09 1.65 2.27 -26.73 -0.06 1.59 16 10 H 0.07 1.24 5.54 -51.93 -0.29 0.95 16 11 O -0.36 -8.20 9.37 -35.23 -0.33 -8.53 16 12 C 0.11 2.69 5.82 37.16 0.22 2.90 16 13 C 0.04 1.07 1.86 -155.66 -0.29 0.78 16 14 C -0.47 -13.40 8.23 -34.44 -0.28 -13.68 16 15 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 16 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 17 N -0.89 -25.84 12.66 55.43 0.70 -25.13 16 18 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.21 -4.87 9.88 -26.73 -0.26 -5.14 16 23 C -0.15 -3.60 9.17 -26.74 -0.25 -3.84 16 24 C -0.10 -1.66 4.38 -26.73 -0.12 -1.78 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.11 1.54 3.69 -51.93 -0.19 1.35 16 29 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.04 0.43 7.70 -51.93 -0.40 0.03 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.34 2.79 8.47 -39.29 -0.33 2.46 16 34 H 0.34 3.14 9.04 -39.29 -0.36 2.79 16 35 H 0.06 0.87 7.87 -51.93 -0.41 0.46 16 36 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.04 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.01 0.24 7.67 -51.93 -0.40 -0.16 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 41 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 42 H 0.09 2.24 8.14 -51.93 -0.42 1.82 16 43 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -29.70 342.52 -8.95 -38.65 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.25 Total: 4.84 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -1.19 Total: -23.66 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.68 Total: -33.56 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.33 Total: -8.53 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.70 -8.95 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694611743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.993 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds