Wall clock time and date at job start Mon Mar 30 2020 07:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46956 * 2 1 4 4 C 1.52995 * 109.47029 * 120.00366 * 2 1 3 5 5 C 1.53001 * 109.47357 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.47242 * 179.97438 * 5 4 2 7 7 N 1.46900 * 109.47022 * 59.99484 * 5 4 2 8 8 C 1.52998 * 109.46785 * 299.99894 * 5 4 2 9 9 C 1.53000 * 109.47470 * 59.99611 * 8 5 4 10 10 H 1.08997 * 109.47006 * 60.00039 * 9 8 5 11 11 O 1.42894 * 109.47429 * 180.02562 * 9 8 5 12 12 C 1.42902 * 113.99987 * 270.00206 * 11 9 8 13 13 C 1.53005 * 109.46969 * 179.97438 * 12 11 9 14 14 C 1.50695 * 115.55283 * 39.62892 * 13 12 11 15 15 H 1.07998 * 119.99814 * 264.82851 * 14 13 12 16 16 C 1.37879 * 119.99941 * 84.82627 * 14 13 12 17 17 N 1.31515 * 120.00043 * 4.90588 * 16 14 13 18 18 Si 1.86800 * 119.99868 * 184.91190 * 16 14 13 19 19 H 1.48499 * 109.47492 * 89.99787 * 18 16 14 20 20 H 1.48503 * 109.47003 * 210.00038 * 18 16 14 21 21 H 1.48500 * 109.47018 * 329.99579 * 18 16 14 22 22 C 1.53005 * 117.49765 * 253.91698 * 13 12 11 23 23 C 1.52993 * 59.99918 * 252.51466 * 22 13 12 24 24 C 1.53001 * 109.47106 * 300.00184 * 9 8 5 25 25 H 1.08993 * 109.47441 * 299.99956 * 1 2 3 26 26 H 1.09011 * 109.47201 * 59.99978 * 1 2 3 27 27 H 1.09007 * 109.47090 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47266 * 191.57184 * 3 2 1 29 29 H 1.09005 * 109.47392 * 311.56891 * 3 2 1 30 30 H 1.09001 * 109.47452 * 71.56981 * 3 2 1 31 31 H 1.08997 * 109.47466 * 59.99910 * 4 2 1 32 32 H 1.09004 * 109.46822 * 299.99642 * 4 2 1 33 33 H 1.00899 * 110.99806 * 55.28954 * 7 5 4 34 34 H 1.00898 * 111.00238 * 179.24388 * 7 5 4 35 35 H 1.08997 * 109.47250 * 179.97438 * 8 5 4 36 36 H 1.09007 * 109.46974 * 299.99646 * 8 5 4 37 37 H 1.08994 * 109.47323 * 299.99978 * 12 11 9 38 38 H 1.08998 * 109.47051 * 60.00234 * 12 11 9 39 39 H 0.97000 * 119.99696 * 179.97438 * 17 16 14 40 40 H 1.09007 * 117.49802 * 0.02562 * 22 13 12 41 41 H 1.09004 * 117.49817 * 145.01830 * 22 13 12 42 42 H 1.09005 * 117.49607 * 252.50823 * 23 22 13 43 43 H 1.09008 * 117.51737 * 107.48868 * 23 22 13 44 44 H 1.08997 * 109.47070 * 299.99816 * 24 9 8 45 45 H 1.08998 * 109.46915 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 1 3.9333 -1.2343 2.1397 7 7 4.0592 0.6644 1.2499 8 6 4.0805 -1.4416 0.0003 9 6 3.5705 -0.7204 -1.2490 10 1 3.9334 0.3073 -1.2487 11 8 4.0467 -1.3940 -2.4157 12 6 5.3064 -0.9143 -2.8903 13 6 5.7164 -1.7035 -4.1353 14 6 4.6020 -2.0247 -5.0975 15 1 4.0966 -2.9773 -5.0398 16 6 4.2277 -1.1023 -6.0516 17 7 4.9049 0.0171 -6.1853 18 14 2.7586 -1.4426 -7.1539 19 1 1.5272 -0.9120 -6.5155 20 1 2.9607 -0.7789 -8.4670 21 1 2.6199 -2.9072 -7.3557 22 6 6.8364 -2.7345 -3.9811 23 6 7.1002 -1.4239 -4.7249 24 6 2.0405 -0.7209 -1.2493 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1103 1.4495 -0.2062 29 1 1.5182 2.0123 -0.7689 30 1 1.8548 1.8933 0.9749 31 1 1.6767 -1.7489 1.2492 32 1 1.6766 -0.2074 2.1392 33 1 3.6736 1.1838 2.0242 34 1 5.0677 0.6917 1.2626 35 1 5.1704 -1.4409 0.0003 36 1 3.7175 -2.4695 0.0001 37 1 5.2214 0.1429 -3.1415 38 1 6.0604 -1.0438 -2.1139 39 1 4.6418 0.6658 -6.8568 40 1 7.2808 -2.8508 -2.9926 41 1 6.7671 -3.6456 -4.5756 42 1 7.2047 -1.4726 -5.8089 43 1 7.7185 -0.6774 -4.2261 44 1 1.6775 -1.7487 -1.2495 45 1 1.6772 -0.2067 -2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694611743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:01 Heat of formation + Delta-G solvation = -47.901788 kcal Electronic energy + Delta-G solvation = -22008.603624 eV Core-core repulsion = 19025.655861 eV Total energy + Delta-G solvation = -2982.947763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97126 -38.86304 -37.08393 -35.06450 -33.93594 -31.88894 -29.65396 -27.95204 -27.72834 -27.30623 -26.74040 -23.01125 -22.79418 -21.45485 -21.08159 -19.28672 -18.15480 -17.34127 -16.87059 -16.55878 -16.11814 -15.84258 -15.61292 -15.52610 -15.03218 -14.60586 -14.58628 -14.06263 -13.80601 -13.35356 -13.24343 -13.05249 -12.89395 -12.80675 -12.75953 -12.51305 -12.36052 -12.29472 -12.09994 -11.93157 -11.66567 -11.43098 -11.28277 -11.08881 -10.99077 -10.83976 -10.37743 -10.21876 -9.81719 -9.06827 -8.06644 -6.13659 1.38627 1.41158 1.49490 2.44957 2.98345 3.23482 3.52979 3.61386 3.79035 3.91955 4.09501 4.25287 4.26862 4.35790 4.42638 4.50383 4.53481 4.57875 4.63840 4.65660 4.79193 4.85383 4.92251 4.93774 4.95796 5.03485 5.06938 5.10093 5.16469 5.18075 5.25248 5.29751 5.33674 5.46031 5.53775 5.59094 5.59988 5.67264 5.81440 5.99399 6.35295 6.42409 6.72277 6.79804 6.92213 7.51669 9.02276 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.006160 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.677204 B = 4544.126748 C = 5420.618978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C -0.146 4.146 4 C -0.098 4.098 5 C 0.102 3.898 6 H 0.053 0.947 7 N -0.840 5.840 8 C -0.126 4.126 9 C 0.088 3.912 10 H 0.061 0.939 11 O -0.389 6.389 12 C 0.130 3.870 13 C 0.004 3.996 14 C -0.485 4.485 15 H 0.042 0.958 16 C 0.025 3.975 17 N -0.911 5.911 18 Si 0.943 3.057 19 H -0.281 1.281 20 H -0.281 1.281 21 H -0.270 1.270 22 C -0.188 4.188 23 C -0.147 4.147 24 C -0.100 4.100 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.016 0.984 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.352 0.648 34 H 0.340 0.660 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.014 0.986 38 H 0.036 0.964 39 H 0.257 0.743 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 1.570 18.075 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.048 4.048 3 C -0.203 4.203 4 C -0.136 4.136 5 C -0.009 4.009 6 H 0.070 0.930 7 N -0.372 5.372 8 C -0.164 4.164 9 C 0.030 3.970 10 H 0.079 0.921 11 O -0.308 6.308 12 C 0.053 3.947 13 C 0.003 3.997 14 C -0.523 4.523 15 H 0.060 0.940 16 C -0.174 4.174 17 N -0.550 5.550 18 Si 0.769 3.231 19 H -0.207 1.207 20 H -0.206 1.206 21 H -0.195 1.195 22 C -0.225 4.225 23 C -0.185 4.185 24 C -0.137 4.137 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.381 1.631 17.176 17.801 hybrid contribution -0.143 -0.109 -0.224 0.287 sum -4.524 1.523 16.952 17.612 Atomic orbital electron populations 1.21880 0.94381 1.01662 1.01796 1.20347 0.94963 0.96312 0.93208 1.22347 1.04461 0.93281 1.00225 1.21665 0.93936 1.00635 0.97373 1.21178 0.95236 0.89290 0.95213 0.92957 1.59212 1.13470 1.12794 1.51752 1.21990 1.00188 0.99434 0.94825 1.22099 0.94374 0.95704 0.84791 0.92073 1.88007 1.37366 1.60861 1.44566 1.21710 0.84250 0.95265 0.93449 1.18996 0.88702 0.97804 0.94173 1.20473 1.16856 1.01038 1.13955 0.93999 1.25558 0.98488 0.95171 0.98232 1.70100 1.40137 1.09578 1.35141 0.85791 0.80570 0.78350 0.78342 1.20733 1.20634 1.19496 1.23063 1.05604 0.93263 1.00558 1.22367 1.00479 0.97658 0.97990 1.21582 0.94001 1.00125 0.98032 0.91010 0.93904 0.92766 0.88202 0.96532 0.91925 0.91504 0.89956 0.83322 0.84628 0.92620 0.91846 0.96749 0.94638 0.93366 0.88943 0.90686 0.91930 0.90505 0.92764 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.45 71.98 0.61 -2.45 16 2 C -0.05 -1.18 0.77 -52.18 -0.04 -1.22 16 3 C -0.15 -3.56 7.04 71.98 0.51 -3.06 16 4 C -0.10 -1.90 4.49 30.59 0.14 -1.77 16 5 C 0.10 2.03 3.57 44.92 0.16 2.19 16 6 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 7 N -0.84 -14.69 4.95 -168.68 -0.83 -15.52 16 8 C -0.13 -3.53 5.23 30.59 0.16 -3.37 16 9 C 0.09 3.15 2.27 30.59 0.07 3.22 16 10 H 0.06 2.27 5.54 -2.39 -0.01 2.25 16 11 O -0.39 -18.22 9.37 -148.98 -1.40 -19.62 16 12 C 0.13 6.19 5.82 71.98 0.42 6.60 16 13 C 0.00 0.19 1.86 -52.93 -0.10 0.09 16 14 C -0.49 -28.34 8.23 25.60 0.21 -28.13 16 15 H 0.04 2.51 7.82 -2.91 -0.02 2.48 16 16 C 0.02 1.43 5.43 84.65 0.46 1.89 16 17 N -0.91 -54.20 12.66 21.45 0.27 -53.93 16 18 Si 0.94 46.23 29.54 68.60 2.03 48.26 16 19 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 22 C -0.19 -8.38 9.88 30.59 0.30 -8.08 16 23 C -0.15 -7.15 9.17 30.59 0.28 -6.87 16 24 C -0.10 -3.34 4.38 30.60 0.13 -3.21 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 1.02 8.14 -2.38 -0.02 1.01 16 27 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.10 2.70 3.69 -2.38 -0.01 2.69 16 29 H 0.02 0.43 8.10 -2.38 -0.02 0.41 16 30 H 0.06 1.22 7.70 -2.39 -0.02 1.20 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.35 4.55 8.47 -89.69 -0.76 3.79 16 34 H 0.34 5.54 9.04 -89.70 -0.81 4.73 16 35 H 0.06 1.57 7.87 -2.39 -0.02 1.55 16 36 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.01 0.74 8.08 -2.39 -0.02 0.73 16 38 H 0.04 1.48 7.67 -2.39 -0.02 1.47 16 39 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.09 3.55 8.08 -2.38 -0.02 3.53 16 41 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.06 3.30 8.14 -2.38 -0.02 3.28 16 43 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -65.13 342.52 2.77 -62.37 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.61 Total: 22.61 kcal Atomic # 6 Polarization: -47.48 SS G_CDS: 3.31 Total: -44.17 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -0.56 Total: -69.45 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.40 Total: -19.62 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -65.13 2.77 -62.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694611743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.465 kcal (2) G-P(sol) polarization free energy of solvation -65.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds