Wall clock time and date at job start Mon Mar 30 2020 08:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.53907 * 2 1 4 4 C 1.52993 * 117.50402 * 13.73133 * 3 2 1 5 5 C 1.52997 * 117.49865 * 305.10275 * 3 2 1 6 6 C 1.53095 * 109.50690 * 120.10777 * 2 1 3 7 7 N 1.47018 * 109.29409 * 63.06209 * 6 2 1 8 8 C 1.46899 * 111.00176 * 182.41234 * 7 6 2 9 9 C 1.52995 * 109.46995 * 170.00206 * 8 7 6 10 10 C 1.53007 * 109.46752 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46975 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47302 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99553 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00120 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99888 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00095 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47273 * 89.99588 * 16 14 12 18 18 H 1.48502 * 109.47094 * 209.99625 * 16 14 12 19 19 H 1.48496 * 109.46910 * 329.99642 * 16 14 12 20 20 C 1.47107 * 110.70202 * 58.59593 * 7 6 2 21 21 C 1.53104 * 109.27905 * 301.41042 * 20 7 6 22 22 O 1.43013 * 109.50440 * 239.88956 * 2 1 3 23 23 H 1.09005 * 109.46638 * 299.89206 * 1 2 3 24 24 H 1.08999 * 109.46901 * 59.88746 * 1 2 3 25 25 H 1.08997 * 109.47161 * 179.89103 * 1 2 3 26 26 H 1.08999 * 115.54878 * 159.44226 * 3 2 1 27 27 H 1.08999 * 117.49619 * 359.97438 * 4 3 2 28 28 H 1.08997 * 117.50044 * 145.02091 * 4 3 2 29 29 H 1.08996 * 117.50287 * 214.97892 * 5 3 2 30 30 H 1.08999 * 117.50087 * 0.02562 * 5 3 2 31 31 H 1.09002 * 109.50646 * 183.02107 * 6 2 1 32 32 H 1.09003 * 109.50955 * 303.10660 * 6 2 1 33 33 H 1.08999 * 109.46967 * 290.00766 * 8 7 6 34 34 H 1.08997 * 109.47000 * 50.00171 * 8 7 6 35 35 H 1.09000 * 109.47486 * 299.99602 * 9 8 7 36 36 H 1.08997 * 109.47276 * 60.00133 * 9 8 7 37 37 H 1.09001 * 109.46976 * 299.99561 * 10 9 8 38 38 H 1.08997 * 109.47384 * 59.99878 * 10 9 8 39 39 H 1.09000 * 109.47105 * 300.00073 * 11 10 9 40 40 H 1.08997 * 109.47204 * 59.99719 * 11 10 9 41 41 H 0.97002 * 119.99401 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.49376 * 181.46945 * 20 7 6 43 43 H 1.08996 * 109.53153 * 61.37331 * 20 7 6 44 44 H 1.08995 * 109.50506 * 296.91474 * 21 20 7 45 45 H 1.08994 * 109.50501 * 176.78179 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0418 1.4419 0.0000 4 6 1.0357 2.5486 0.3221 5 6 1.5426 2.3686 -1.1103 6 6 2.0413 -0.7239 1.2484 7 7 1.6109 -2.1290 1.2055 8 6 2.0335 -2.8462 2.4159 9 6 1.3629 -4.2208 2.4545 10 6 1.8025 -4.9675 3.7156 11 6 1.1324 -6.3424 3.7539 12 6 1.5658 -7.0781 4.9956 13 1 2.2511 -6.6118 5.6879 14 6 1.0876 -8.3464 5.2477 15 7 1.4663 -8.9887 6.3312 16 14 -0.0971 -9.1531 4.0498 17 1 0.6703 -9.9140 3.0313 18 1 -0.9934 -10.0790 4.7879 19 1 -0.9101 -8.1077 3.3781 20 6 2.1185 -2.7917 -0.0058 21 6 1.6065 -2.0470 -1.2416 22 8 2.0075 -0.6763 -1.1662 23 1 -0.3633 0.5122 0.8910 24 1 -0.3633 0.5156 -0.8890 25 1 -0.3633 -1.0276 -0.0020 26 1 3.0667 1.5770 0.3453 27 1 0.0091 2.2496 0.5336 28 1 1.3987 3.4120 0.8797 29 1 2.2389 3.1137 -1.4950 30 1 0.8493 1.9513 -1.8405 31 1 3.1299 -0.6773 1.2759 32 1 1.6338 -0.2455 2.1391 33 1 3.1163 -2.9703 2.4053 34 1 1.7420 -2.2748 3.2972 35 1 0.2800 -4.0966 2.4652 36 1 1.6544 -4.7922 1.5733 37 1 2.8854 -5.0917 3.7053 38 1 1.5107 -4.3959 4.5966 39 1 0.0495 -6.2186 3.7638 40 1 1.4246 -6.9137 2.8728 41 1 1.1301 -9.8811 6.5083 42 1 1.7669 -3.8231 -0.0307 43 1 3.2084 -2.7787 0.0013 44 1 0.5187 -2.1065 -1.2777 45 1 2.0264 -2.5001 -2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694902603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:20 Heat of formation + Delta-G solvation = -28.921744 kcal Electronic energy + Delta-G solvation = -20807.855669 eV Core-core repulsion = 17825.730943 eV Total energy + Delta-G solvation = -2982.124726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48860 -37.60238 -36.22732 -34.26711 -32.27492 -31.69534 -29.69447 -28.50101 -26.18721 -24.51013 -23.98695 -22.59014 -21.76781 -20.37539 -20.03105 -19.16238 -16.97603 -16.66389 -16.35058 -15.62758 -15.50830 -15.22078 -14.67720 -14.37657 -14.15036 -13.88128 -13.59740 -12.83538 -12.65092 -12.55564 -12.36474 -12.02201 -11.96768 -11.79452 -11.47858 -11.37483 -11.29398 -11.06220 -10.90822 -10.72767 -10.64677 -10.47737 -10.20356 -9.88956 -9.73701 -9.66641 -9.39754 -9.13589 -8.51508 -8.39003 -6.02168 -3.99758 3.18219 3.32163 3.39420 3.43969 3.70130 3.90712 4.39344 4.47429 4.55529 4.70987 4.77159 4.82656 4.89328 5.01932 5.08645 5.18390 5.28553 5.31818 5.35440 5.42306 5.42696 5.53045 5.58069 5.65106 5.70028 5.73668 5.79815 5.82500 5.86975 5.92752 6.03197 6.10363 6.16701 6.37567 6.65001 6.76480 6.88550 6.94169 7.06376 7.08811 7.35123 7.48356 7.82986 8.57105 9.03125 9.60845 11.11480 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.041079 B = 0.003129 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.449073 B = 8947.057583 C = 9186.677049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.150 3.850 3 C -0.144 4.144 4 C -0.176 4.176 5 C -0.166 4.166 6 C 0.035 3.965 7 N -0.535 5.535 8 C 0.056 3.944 9 C -0.116 4.116 10 C -0.101 4.101 11 C -0.013 4.013 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.265 1.265 20 C 0.014 3.986 21 C 0.062 3.938 22 O -0.375 6.375 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.015 0.985 40 H 0.009 0.991 41 H 0.262 0.738 42 H 0.091 0.909 43 H 0.041 0.959 44 H 0.061 0.939 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 21.822 -15.964 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.111 3.889 3 C -0.163 4.163 4 C -0.213 4.213 5 C -0.203 4.203 6 C -0.094 4.094 7 N -0.259 5.259 8 C -0.071 4.071 9 C -0.154 4.154 10 C -0.140 4.140 11 C -0.051 4.051 12 C -0.558 4.558 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.545 5.545 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.115 4.115 21 C -0.015 4.015 22 O -0.294 6.294 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.126 21.734 -16.016 27.022 hybrid contribution 0.275 -0.793 -0.214 0.867 sum -0.850 20.941 -16.231 26.508 Atomic orbital electron populations 1.22390 0.94971 1.03605 1.01917 1.20870 0.93424 0.89719 0.84931 1.22082 0.99256 0.89497 1.05451 1.23169 0.99555 0.99508 0.99054 1.22853 1.03656 1.01908 0.91836 1.22683 0.98407 0.89598 0.98699 1.62270 1.59566 1.01445 1.02645 1.22238 0.97632 0.95817 0.91395 1.21697 1.00728 0.93482 0.99445 1.21426 1.00017 0.97333 0.95187 1.19561 0.95885 0.92529 0.97082 1.21189 1.28096 1.00228 1.06260 0.91145 1.25054 0.96214 0.97182 0.95212 1.69928 1.45074 1.13306 1.26195 0.86756 0.81573 0.79436 0.81397 1.20363 1.21439 1.18962 1.22862 0.98252 0.99693 0.90648 1.22687 0.99900 0.81616 0.97327 1.88012 1.75596 1.23145 1.42666 0.91353 0.92449 0.90662 0.87539 0.87891 0.88599 0.88868 0.88496 0.94240 0.89709 0.94870 0.90734 0.91660 0.92629 0.93100 0.92813 0.96658 0.97255 0.92803 0.89041 0.94101 0.92071 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 6.83 37.16 0.25 -1.39 16 2 C 0.15 1.55 0.93 -90.57 -0.08 1.47 16 3 C -0.14 -1.29 5.35 -90.62 -0.48 -1.78 16 4 C -0.18 -1.28 9.66 -26.73 -0.26 -1.54 16 5 C -0.17 -1.31 9.85 -26.73 -0.26 -1.57 16 6 C 0.03 0.39 4.34 -3.71 -0.02 0.37 16 7 N -0.53 -6.65 4.10 -234.23 -0.96 -7.61 16 8 C 0.06 0.77 4.96 -3.83 -0.02 0.75 16 9 C -0.12 -1.85 5.15 -26.73 -0.14 -1.99 16 10 C -0.10 -2.01 5.15 -26.73 -0.14 -2.14 16 11 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 12 C -0.52 -15.11 9.66 -34.44 -0.33 -15.45 16 13 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 15 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 16 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 20 C 0.01 0.16 5.44 -3.66 -0.02 0.14 16 21 C 0.06 0.64 6.61 37.21 0.25 0.89 16 22 O -0.38 -4.42 10.26 -35.23 -0.36 -4.78 16 23 H 0.07 0.60 6.75 -51.93 -0.35 0.25 16 24 H 0.06 0.51 6.96 -51.93 -0.36 0.15 16 25 H 0.07 0.81 6.12 -51.93 -0.32 0.50 16 26 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.10 0.72 5.90 -51.93 -0.31 0.42 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.80 7.29 -51.93 -0.38 0.42 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 33 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.87 6.52 -51.93 -0.34 0.53 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 40 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.09 1.07 6.39 -51.93 -0.33 0.74 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.63 6.49 -51.93 -0.34 0.29 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -31.17 340.99 -9.68 -40.85 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -8.14 Total: -2.53 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.46 Total: -20.87 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.19 Total: -35.22 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.36 Total: -4.78 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.17 -9.68 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694902603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.933 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds