Wall clock time and date at job start Mon Mar 30 2020 08:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.53907 * 2 1 4 4 C 1.52993 * 117.50402 * 13.73133 * 3 2 1 5 5 C 1.52997 * 117.49865 * 305.10275 * 3 2 1 6 6 C 1.53095 * 109.50690 * 120.10777 * 2 1 3 7 7 N 1.47018 * 109.29409 * 63.06209 * 6 2 1 8 8 C 1.46899 * 111.00176 * 182.41234 * 7 6 2 9 9 C 1.52995 * 109.46995 * 170.00206 * 8 7 6 10 10 C 1.53007 * 109.46752 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46975 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47302 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99553 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00120 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99888 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00095 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47273 * 89.99588 * 16 14 12 18 18 H 1.48502 * 109.47094 * 209.99625 * 16 14 12 19 19 H 1.48496 * 109.46910 * 329.99642 * 16 14 12 20 20 C 1.47107 * 110.70202 * 58.59593 * 7 6 2 21 21 C 1.53104 * 109.27905 * 301.41042 * 20 7 6 22 22 O 1.43013 * 109.50440 * 239.88956 * 2 1 3 23 23 H 1.09005 * 109.46638 * 299.89206 * 1 2 3 24 24 H 1.08999 * 109.46901 * 59.88746 * 1 2 3 25 25 H 1.08997 * 109.47161 * 179.89103 * 1 2 3 26 26 H 1.08999 * 115.54878 * 159.44226 * 3 2 1 27 27 H 1.08999 * 117.49619 * 359.97438 * 4 3 2 28 28 H 1.08997 * 117.50044 * 145.02091 * 4 3 2 29 29 H 1.08996 * 117.50287 * 214.97892 * 5 3 2 30 30 H 1.08999 * 117.50087 * 0.02562 * 5 3 2 31 31 H 1.09002 * 109.50646 * 183.02107 * 6 2 1 32 32 H 1.09003 * 109.50955 * 303.10660 * 6 2 1 33 33 H 1.08999 * 109.46967 * 290.00766 * 8 7 6 34 34 H 1.08997 * 109.47000 * 50.00171 * 8 7 6 35 35 H 1.09000 * 109.47486 * 299.99602 * 9 8 7 36 36 H 1.08997 * 109.47276 * 60.00133 * 9 8 7 37 37 H 1.09001 * 109.46976 * 299.99561 * 10 9 8 38 38 H 1.08997 * 109.47384 * 59.99878 * 10 9 8 39 39 H 1.09000 * 109.47105 * 300.00073 * 11 10 9 40 40 H 1.08997 * 109.47204 * 59.99719 * 11 10 9 41 41 H 0.97002 * 119.99401 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.49376 * 181.46945 * 20 7 6 43 43 H 1.08996 * 109.53153 * 61.37331 * 20 7 6 44 44 H 1.08995 * 109.50506 * 296.91474 * 21 20 7 45 45 H 1.08994 * 109.50501 * 176.78179 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0418 1.4419 0.0000 4 6 1.0357 2.5486 0.3221 5 6 1.5426 2.3686 -1.1103 6 6 2.0413 -0.7239 1.2484 7 7 1.6109 -2.1290 1.2055 8 6 2.0335 -2.8462 2.4159 9 6 1.3629 -4.2208 2.4545 10 6 1.8025 -4.9675 3.7156 11 6 1.1324 -6.3424 3.7539 12 6 1.5658 -7.0781 4.9956 13 1 2.2511 -6.6118 5.6879 14 6 1.0876 -8.3464 5.2477 15 7 1.4663 -8.9887 6.3312 16 14 -0.0971 -9.1531 4.0498 17 1 0.6703 -9.9140 3.0313 18 1 -0.9934 -10.0790 4.7879 19 1 -0.9101 -8.1077 3.3781 20 6 2.1185 -2.7917 -0.0058 21 6 1.6065 -2.0470 -1.2416 22 8 2.0075 -0.6763 -1.1662 23 1 -0.3633 0.5122 0.8910 24 1 -0.3633 0.5156 -0.8890 25 1 -0.3633 -1.0276 -0.0020 26 1 3.0667 1.5770 0.3453 27 1 0.0091 2.2496 0.5336 28 1 1.3987 3.4120 0.8797 29 1 2.2389 3.1137 -1.4950 30 1 0.8493 1.9513 -1.8405 31 1 3.1299 -0.6773 1.2759 32 1 1.6338 -0.2455 2.1391 33 1 3.1163 -2.9703 2.4053 34 1 1.7420 -2.2748 3.2972 35 1 0.2800 -4.0966 2.4652 36 1 1.6544 -4.7922 1.5733 37 1 2.8854 -5.0917 3.7053 38 1 1.5107 -4.3959 4.5966 39 1 0.0495 -6.2186 3.7638 40 1 1.4246 -6.9137 2.8728 41 1 1.1301 -9.8811 6.5083 42 1 1.7669 -3.8231 -0.0307 43 1 3.2084 -2.7787 0.0013 44 1 0.5187 -2.1065 -1.2777 45 1 2.0264 -2.5001 -2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694902603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:20 Heat of formation + Delta-G solvation = -47.626981 kcal Electronic energy + Delta-G solvation = -20808.666789 eV Core-core repulsion = 17825.730943 eV Total energy + Delta-G solvation = -2982.935846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31359 -38.43912 -37.23699 -35.88909 -34.18946 -32.55992 -31.11487 -29.59254 -27.43310 -25.56989 -25.16172 -23.16985 -23.06708 -21.76813 -21.34685 -19.95965 -18.86213 -17.73208 -17.21470 -16.65944 -16.47825 -16.32908 -15.98925 -15.68145 -15.39980 -14.95084 -14.66933 -14.47110 -13.91217 -13.67589 -13.49557 -13.40319 -13.15654 -12.85791 -12.81940 -12.46680 -12.17564 -12.12180 -12.00401 -11.96813 -11.71635 -11.65488 -11.40912 -11.29856 -11.27719 -11.24005 -10.87915 -10.76637 -10.47029 -9.37459 -8.29987 -6.34203 1.35611 1.37816 1.50393 2.36360 2.46753 2.77602 3.05413 3.22018 3.63704 3.83972 3.92613 3.95851 4.03743 4.12013 4.13635 4.23566 4.25558 4.40527 4.42900 4.47592 4.56180 4.61312 4.66339 4.72643 4.77625 4.80105 4.89102 4.92878 4.96908 5.01807 5.08349 5.13619 5.16628 5.23942 5.24723 5.30168 5.42554 5.56404 5.64056 5.67981 5.97451 5.98854 6.27524 6.28980 6.74195 7.30694 8.87066 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.041079 B = 0.003129 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.449073 B = 8947.057583 C = 9186.677049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 C -0.160 4.160 4 C -0.163 4.163 5 C -0.165 4.165 6 C 0.035 3.965 7 N -0.537 5.537 8 C 0.063 3.937 9 C -0.102 4.102 10 C -0.095 4.095 11 C -0.011 4.011 12 C -0.535 4.535 13 H 0.029 0.971 14 C 0.000 4.000 15 N -0.954 5.954 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.245 1.245 20 C 0.013 3.987 21 C 0.063 3.937 22 O -0.390 6.390 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.031 0.969 32 H 0.091 0.909 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.019 0.981 40 H 0.017 0.983 41 H 0.266 0.734 42 H 0.092 0.908 43 H 0.033 0.967 44 H 0.064 0.936 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 22.889 -18.009 29.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.110 3.890 3 C -0.179 4.179 4 C -0.200 4.200 5 C -0.202 4.202 6 C -0.093 4.093 7 N -0.261 5.261 8 C -0.064 4.064 9 C -0.140 4.140 10 C -0.133 4.133 11 C -0.049 4.049 12 C -0.573 4.573 13 H 0.047 0.953 14 C -0.196 4.196 15 N -0.595 5.595 16 Si 0.777 3.223 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.169 1.169 20 C -0.116 4.116 21 C -0.014 4.014 22 O -0.309 6.309 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.405 22.828 -18.072 29.215 hybrid contribution 0.753 -1.090 0.497 1.415 sum -1.651 21.737 -17.576 28.002 Atomic orbital electron populations 1.22337 0.94334 1.03013 1.02631 1.20953 0.93873 0.90215 0.83989 1.22085 0.99689 0.89134 1.06991 1.23243 0.99274 0.98944 0.98551 1.22904 1.03691 1.01634 0.92008 1.22729 0.97992 0.88922 0.99662 1.62253 1.59586 1.02005 1.02285 1.22070 0.97122 0.94827 0.92400 1.21500 1.00813 0.94325 0.97363 1.21292 0.99249 0.95567 0.97180 1.19528 0.96287 0.94301 0.94735 1.21572 1.27384 1.00861 1.07481 0.95265 1.26091 0.98351 0.97920 0.97266 1.70087 1.46867 1.13993 1.28527 0.85594 0.79114 0.78687 0.78870 1.19101 1.20953 1.16859 1.22907 0.97823 0.99913 0.90914 1.22760 1.00168 0.81132 0.97332 1.88002 1.75968 1.23680 1.43272 0.90528 0.91834 0.91844 0.87796 0.87496 0.87314 0.87981 0.88883 0.95038 0.89063 0.95234 0.90372 0.91533 0.92014 0.93751 0.93340 0.96225 0.96467 0.92513 0.88990 0.94853 0.91740 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 6.83 71.98 0.49 -2.38 16 2 C 0.15 2.86 0.93 -10.76 -0.01 2.85 16 3 C -0.16 -2.62 5.35 -10.80 -0.06 -2.67 16 4 C -0.16 -2.01 9.66 30.59 0.30 -1.71 16 5 C -0.17 -2.30 9.85 30.59 0.30 -2.00 16 6 C 0.04 0.74 4.34 86.31 0.37 1.11 16 7 N -0.54 -12.55 4.10 -894.97 -3.67 -16.22 16 8 C 0.06 1.65 4.96 86.30 0.43 2.08 16 9 C -0.10 -3.10 5.15 30.59 0.16 -2.94 16 10 C -0.09 -3.69 5.15 30.60 0.16 -3.54 16 11 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 12 C -0.53 -31.67 9.66 25.60 0.25 -31.43 16 13 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 14 C 0.00 0.00 5.47 84.65 0.46 0.46 16 15 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 16 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.25 -10.68 6.54 99.48 0.65 -10.02 16 20 C 0.01 0.27 5.44 86.30 0.47 0.74 16 21 C 0.06 1.21 6.61 72.02 0.48 1.68 16 22 O -0.39 -8.61 10.26 -148.98 -1.53 -10.14 16 23 H 0.08 1.18 6.75 -2.38 -0.02 1.17 16 24 H 0.06 1.01 6.96 -2.39 -0.02 1.00 16 25 H 0.06 1.26 6.12 -2.39 -0.01 1.24 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.11 1.24 5.90 -2.39 -0.01 1.22 16 28 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.37 7.29 -2.39 -0.02 1.35 16 31 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 33 H 0.03 0.79 8.12 -2.39 -0.02 0.77 16 34 H 0.08 1.98 8.04 -2.39 -0.02 1.96 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.81 6.52 -2.39 -0.02 1.79 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 40 H 0.02 0.78 7.57 -2.39 -0.02 0.77 16 41 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 42 H 0.09 1.99 6.39 -2.39 -0.02 1.97 16 43 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 1.20 6.49 -2.39 -0.02 1.19 16 45 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -67.09 340.99 1.78 -65.31 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.88 Total: 13.12 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 3.91 Total: -38.15 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -3.37 Total: -76.95 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.53 Total: -10.14 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -67.09 1.78 -65.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694902603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.688 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds