Wall clock time and date at job start Mon Mar 30 2020 08:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.50350 * 2 1 4 4 C 1.52999 * 117.49775 * 128.66294 * 3 2 1 5 5 C 1.52992 * 117.50117 * 60.00159 * 3 2 1 6 6 C 1.53093 * 109.50691 * 239.90930 * 2 1 3 7 7 N 1.47009 * 109.26071 * 296.91506 * 6 2 1 8 8 C 1.46894 * 111.00295 * 177.60644 * 7 6 2 9 9 C 1.53005 * 109.47005 * 57.58828 * 8 7 6 10 10 C 1.53002 * 109.46856 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.46856 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47035 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99966 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00053 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99945 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00116 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47106 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46817 * 119.99935 * 16 14 12 19 19 H 1.48498 * 109.47164 * 240.00213 * 16 14 12 20 20 C 1.47016 * 110.75376 * 301.38357 * 7 6 2 21 21 C 1.53103 * 109.29298 * 58.59374 * 20 7 6 22 22 O 1.43015 * 109.50429 * 120.12631 * 2 1 3 23 23 H 1.08998 * 109.46957 * 180.09071 * 1 2 3 24 24 H 1.09004 * 109.46999 * 300.08840 * 1 2 3 25 25 H 1.08997 * 109.47106 * 60.09037 * 1 2 3 26 26 H 1.08997 * 115.54782 * 274.32461 * 3 2 1 27 27 H 1.08995 * 117.50059 * 359.97438 * 4 3 2 28 28 H 1.09004 * 117.49681 * 145.01982 * 4 3 2 29 29 H 1.09003 * 117.49775 * 214.97833 * 5 3 2 30 30 H 1.09004 * 117.50142 * 359.97438 * 5 3 2 31 31 H 1.09001 * 109.50838 * 176.97939 * 6 2 1 32 32 H 1.09005 * 109.53925 * 56.86817 * 6 2 1 33 33 H 1.09008 * 109.47347 * 177.58737 * 8 7 6 34 34 H 1.09004 * 109.47299 * 297.59005 * 8 7 6 35 35 H 1.08998 * 109.47003 * 299.99544 * 9 8 7 36 36 H 1.08997 * 109.47145 * 60.00233 * 9 8 7 37 37 H 1.08998 * 109.47323 * 299.99760 * 10 9 8 38 38 H 1.09004 * 109.47468 * 60.00165 * 10 9 8 39 39 H 1.08998 * 109.46959 * 299.99983 * 11 10 9 40 40 H 1.08997 * 109.47145 * 60.00117 * 11 10 9 41 41 H 0.96996 * 119.99858 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.50934 * 178.55099 * 20 7 6 43 43 H 1.09003 * 109.50733 * 298.63693 * 20 7 6 44 44 H 1.08998 * 109.50917 * 63.10882 * 21 20 7 45 45 H 1.08998 * 109.50376 * 183.24332 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 3.0759 1.8250 1.0597 5 6 1.6372 2.3347 1.1753 6 6 2.0412 -0.7235 -1.2486 7 7 1.6110 -2.1286 -1.2051 8 6 2.0336 -2.8462 -2.4152 9 6 3.5539 -2.7522 -2.5592 10 6 3.9939 -3.4991 -3.8199 11 6 5.5142 -3.4046 -3.9642 12 6 5.9476 -4.1398 -5.2062 13 1 5.2123 -4.6262 -5.8301 14 6 7.2828 -4.1914 -5.5462 15 7 8.1781 -3.5987 -4.7868 16 14 7.8200 -5.1033 -7.0855 17 1 6.6293 -5.6784 -7.7611 18 1 8.5036 -4.1600 -8.0064 19 1 8.7542 -6.1959 -6.7129 20 6 2.1185 -2.7916 0.0049 21 6 1.6074 -2.0477 1.2415 22 8 2.0075 -0.6766 1.1660 23 1 -0.3633 -1.0277 0.0016 24 1 -0.3633 0.5152 0.8892 25 1 -0.3633 0.5124 -0.8908 26 1 2.1279 1.9101 -0.9806 27 1 3.3926 1.0496 1.7571 28 1 3.8436 2.5451 0.7764 29 1 1.4589 3.3898 0.9679 30 1 1.0072 1.8945 1.9484 31 1 3.1299 -0.6769 -1.2762 32 1 1.6337 -0.2455 -2.1394 33 1 1.7400 -3.8932 -2.3380 34 1 1.5576 -2.3988 -3.2879 35 1 3.8475 -1.7053 -2.6365 36 1 4.0298 -3.1996 -1.6866 37 1 3.7003 -4.5460 -3.7431 38 1 3.5180 -3.0514 -4.6923 39 1 5.8074 -2.3576 -4.0412 40 1 5.9905 -3.8521 -3.0919 41 1 9.1174 -3.6353 -5.0258 42 1 1.7669 -3.8231 0.0294 43 1 3.2085 -2.7788 -0.0030 44 1 0.5197 -2.1072 1.2784 45 1 2.0281 -2.5014 2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694902641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:22 Heat of formation + Delta-G solvation = -34.422624 kcal Electronic energy + Delta-G solvation = -21083.728989 eV Core-core repulsion = 18101.365727 eV Total energy + Delta-G solvation = -2982.363262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40280 -37.42097 -36.04005 -34.03633 -32.18500 -31.86014 -29.49322 -27.93308 -26.11203 -24.10866 -24.01858 -22.29993 -22.21233 -20.36720 -20.17419 -19.03858 -16.86367 -16.28681 -16.14940 -15.44638 -15.05640 -14.70611 -14.62240 -14.47886 -14.44224 -13.79773 -13.37292 -12.83419 -12.64941 -12.28052 -12.11284 -11.83033 -11.76236 -11.66150 -11.45925 -11.43019 -11.15148 -10.95395 -10.76892 -10.53174 -10.47386 -10.39337 -10.36166 -10.08294 -9.64220 -9.52168 -9.39324 -9.05967 -8.34398 -8.11599 -5.98956 -4.01422 3.30946 3.38241 3.42588 3.54600 3.72581 3.93627 4.46465 4.53703 4.73457 4.83847 4.94701 4.99444 5.15052 5.15417 5.21474 5.31904 5.36282 5.38996 5.48737 5.52572 5.55913 5.58678 5.71662 5.79152 5.82775 5.86357 5.89039 6.02165 6.05126 6.09323 6.19316 6.20064 6.28246 6.49062 6.72700 6.90737 7.03337 7.03889 7.17838 7.18100 7.69245 7.84021 8.01541 8.44539 9.06304 9.62698 11.12376 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028943 B = 0.003470 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.175451 B = 8066.330309 C = 8492.999701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 C -0.148 4.148 4 C -0.164 4.164 5 C -0.172 4.172 6 C 0.030 3.970 7 N -0.534 5.534 8 C 0.054 3.946 9 C -0.154 4.154 10 C -0.106 4.106 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.012 3.988 21 C 0.063 3.937 22 O -0.375 6.375 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.013 0.987 40 H 0.013 0.987 41 H 0.259 0.741 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.982 8.333 12.730 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.110 3.890 3 C -0.167 4.167 4 C -0.201 4.201 5 C -0.209 4.209 6 C -0.098 4.098 7 N -0.257 5.257 8 C -0.074 4.074 9 C -0.193 4.193 10 C -0.144 4.144 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.116 4.116 21 C -0.013 4.013 22 O -0.294 6.294 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.220 8.442 12.904 22.380 hybrid contribution 1.278 -0.671 -1.182 1.866 sum -14.942 7.771 11.722 20.520 Atomic orbital electron populations 1.22218 0.94850 1.02986 1.01932 1.20877 0.93296 0.89872 0.84957 1.22213 1.05481 0.93502 0.95477 1.22878 0.92005 1.03132 1.02116 1.22901 0.98813 0.98744 1.00479 1.22721 0.99642 0.89329 0.98154 1.62523 1.58707 1.01886 1.02575 1.22313 0.94810 0.98686 0.91576 1.22275 0.95569 1.01220 1.00249 1.21542 1.00102 0.98226 0.94524 1.19096 0.88870 0.96962 0.96702 1.21323 0.92288 1.33320 1.08864 0.92687 1.25044 0.96891 0.95722 0.96909 1.69981 1.01364 1.44067 1.38151 0.86550 0.78637 0.79619 0.83293 1.19733 1.21010 1.21015 1.22808 0.99262 0.98819 0.90751 1.22652 0.99545 0.81799 0.97351 1.87976 1.75596 1.23071 1.42801 0.91060 0.92591 0.91810 0.86782 0.87700 0.89138 0.89081 0.88754 0.92896 0.89952 0.90798 0.90736 0.92336 0.92528 0.93490 0.93454 0.96841 0.96866 0.93099 0.89868 0.93195 0.92360 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.01 37.16 0.30 -1.34 16 2 C 0.15 1.70 0.91 -90.57 -0.08 1.62 16 3 C -0.15 -1.56 5.15 -90.62 -0.47 -2.02 16 4 C -0.16 -1.73 9.88 -26.69 -0.26 -1.99 16 5 C -0.17 -1.60 9.68 -26.70 -0.26 -1.86 16 6 C 0.03 0.38 3.81 -3.72 -0.01 0.37 16 7 N -0.53 -6.85 4.31 -234.30 -1.01 -7.86 16 8 C 0.05 0.75 5.38 -3.82 -0.02 0.73 16 9 C -0.15 -2.65 4.50 -26.73 -0.12 -2.77 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 12 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 13 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 16 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 20 C 0.01 0.14 5.33 -3.71 -0.02 0.12 16 21 C 0.06 0.68 6.61 37.21 0.25 0.93 16 22 O -0.38 -4.64 8.64 -35.23 -0.30 -4.94 16 23 H 0.07 0.76 6.12 -51.93 -0.32 0.44 16 24 H 0.06 0.53 7.29 -51.93 -0.38 0.15 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.11 1.12 8.11 -51.93 -0.42 0.69 16 27 H 0.10 1.23 7.06 -51.93 -0.37 0.86 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.89 7.61 -51.93 -0.40 0.49 16 31 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.00 8.11 -51.92 -0.42 0.58 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.04 6.42 -51.93 -0.33 0.71 16 36 H 0.06 1.01 6.61 -51.93 -0.34 0.66 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 43 H 0.05 0.69 6.59 -51.93 -0.34 0.35 16 44 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -30.67 343.47 -9.99 -40.67 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -8.18 Total: -1.26 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -1.39 Total: -21.98 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.27 Total: -34.59 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.30 Total: -4.94 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.67 -9.99 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694902641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.243 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds