Wall clock time and date at job start Mon Mar 30 2020 08:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.50350 * 2 1 4 4 C 1.52999 * 117.49775 * 128.66294 * 3 2 1 5 5 C 1.52992 * 117.50117 * 60.00159 * 3 2 1 6 6 C 1.53093 * 109.50691 * 239.90930 * 2 1 3 7 7 N 1.47009 * 109.26071 * 296.91506 * 6 2 1 8 8 C 1.46894 * 111.00295 * 177.60644 * 7 6 2 9 9 C 1.53005 * 109.47005 * 57.58828 * 8 7 6 10 10 C 1.53002 * 109.46856 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.46856 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47035 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99966 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00053 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99945 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00116 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47106 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46817 * 119.99935 * 16 14 12 19 19 H 1.48498 * 109.47164 * 240.00213 * 16 14 12 20 20 C 1.47016 * 110.75376 * 301.38357 * 7 6 2 21 21 C 1.53103 * 109.29298 * 58.59374 * 20 7 6 22 22 O 1.43015 * 109.50429 * 120.12631 * 2 1 3 23 23 H 1.08998 * 109.46957 * 180.09071 * 1 2 3 24 24 H 1.09004 * 109.46999 * 300.08840 * 1 2 3 25 25 H 1.08997 * 109.47106 * 60.09037 * 1 2 3 26 26 H 1.08997 * 115.54782 * 274.32461 * 3 2 1 27 27 H 1.08995 * 117.50059 * 359.97438 * 4 3 2 28 28 H 1.09004 * 117.49681 * 145.01982 * 4 3 2 29 29 H 1.09003 * 117.49775 * 214.97833 * 5 3 2 30 30 H 1.09004 * 117.50142 * 359.97438 * 5 3 2 31 31 H 1.09001 * 109.50838 * 176.97939 * 6 2 1 32 32 H 1.09005 * 109.53925 * 56.86817 * 6 2 1 33 33 H 1.09008 * 109.47347 * 177.58737 * 8 7 6 34 34 H 1.09004 * 109.47299 * 297.59005 * 8 7 6 35 35 H 1.08998 * 109.47003 * 299.99544 * 9 8 7 36 36 H 1.08997 * 109.47145 * 60.00233 * 9 8 7 37 37 H 1.08998 * 109.47323 * 299.99760 * 10 9 8 38 38 H 1.09004 * 109.47468 * 60.00165 * 10 9 8 39 39 H 1.08998 * 109.46959 * 299.99983 * 11 10 9 40 40 H 1.08997 * 109.47145 * 60.00117 * 11 10 9 41 41 H 0.96996 * 119.99858 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.50934 * 178.55099 * 20 7 6 43 43 H 1.09003 * 109.50733 * 298.63693 * 20 7 6 44 44 H 1.08998 * 109.50917 * 63.10882 * 21 20 7 45 45 H 1.08998 * 109.50376 * 183.24332 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 3.0759 1.8250 1.0597 5 6 1.6372 2.3347 1.1753 6 6 2.0412 -0.7235 -1.2486 7 7 1.6110 -2.1286 -1.2051 8 6 2.0336 -2.8462 -2.4152 9 6 3.5539 -2.7522 -2.5592 10 6 3.9939 -3.4991 -3.8199 11 6 5.5142 -3.4046 -3.9642 12 6 5.9476 -4.1398 -5.2062 13 1 5.2123 -4.6262 -5.8301 14 6 7.2828 -4.1914 -5.5462 15 7 8.1781 -3.5987 -4.7868 16 14 7.8200 -5.1033 -7.0855 17 1 6.6293 -5.6784 -7.7611 18 1 8.5036 -4.1600 -8.0064 19 1 8.7542 -6.1959 -6.7129 20 6 2.1185 -2.7916 0.0049 21 6 1.6074 -2.0477 1.2415 22 8 2.0075 -0.6766 1.1660 23 1 -0.3633 -1.0277 0.0016 24 1 -0.3633 0.5152 0.8892 25 1 -0.3633 0.5124 -0.8908 26 1 2.1279 1.9101 -0.9806 27 1 3.3926 1.0496 1.7571 28 1 3.8436 2.5451 0.7764 29 1 1.4589 3.3898 0.9679 30 1 1.0072 1.8945 1.9484 31 1 3.1299 -0.6769 -1.2762 32 1 1.6337 -0.2455 -2.1394 33 1 1.7400 -3.8932 -2.3380 34 1 1.5576 -2.3988 -3.2879 35 1 3.8475 -1.7053 -2.6365 36 1 4.0298 -3.1996 -1.6866 37 1 3.7003 -4.5460 -3.7431 38 1 3.5180 -3.0514 -4.6923 39 1 5.8074 -2.3576 -4.0412 40 1 5.9905 -3.8521 -3.0919 41 1 9.1174 -3.6353 -5.0258 42 1 1.7669 -3.8231 0.0294 43 1 3.2085 -2.7788 -0.0030 44 1 0.5197 -2.1072 1.2784 45 1 2.0281 -2.5014 2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694902641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:22 Heat of formation + Delta-G solvation = -52.129840 kcal Electronic energy + Delta-G solvation = -21084.496831 eV Core-core repulsion = 18101.365727 eV Total energy + Delta-G solvation = -2983.131105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34280 -38.44872 -37.07885 -35.83634 -33.99526 -32.83092 -30.85380 -29.24444 -27.44598 -25.63356 -25.01356 -23.53000 -23.07820 -22.10607 -21.24949 -20.02101 -18.47569 -17.79189 -17.15063 -16.56872 -16.37903 -16.17073 -15.84159 -15.72275 -15.46711 -14.90457 -14.54862 -14.34451 -13.80908 -13.71243 -13.56170 -13.40159 -12.94673 -12.85868 -12.64562 -12.42889 -12.40068 -12.28433 -12.23689 -12.06951 -11.86057 -11.61615 -11.42458 -11.31001 -11.23228 -11.14577 -10.89974 -10.59977 -10.41404 -9.28081 -8.23115 -6.35484 1.37703 1.38268 1.52000 2.38427 2.70521 2.79287 3.02765 3.09446 3.67523 3.86290 3.91835 3.99276 4.04758 4.15592 4.18813 4.20601 4.30924 4.38713 4.43563 4.47346 4.62896 4.63418 4.71400 4.78343 4.81934 4.83718 4.92489 4.96186 4.99626 5.00173 5.11128 5.16991 5.24406 5.28594 5.29457 5.37009 5.40582 5.49951 5.70281 5.81902 5.95453 5.98324 6.21371 6.30232 6.82281 7.34458 8.88900 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028943 B = 0.003470 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.175451 B = 8066.330309 C = 8492.999701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 C -0.159 4.159 4 C -0.177 4.177 5 C -0.154 4.154 6 C 0.030 3.970 7 N -0.525 5.525 8 C 0.063 3.937 9 C -0.141 4.141 10 C -0.093 4.093 11 C 0.023 3.977 12 C -0.544 4.544 13 H 0.062 0.938 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.260 1.260 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.010 3.990 21 C 0.064 3.936 22 O -0.390 6.390 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.025 0.975 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.054 0.946 39 H -0.016 1.016 40 H -0.016 1.016 41 H 0.264 0.736 42 H 0.097 0.903 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 8.101 12.247 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.109 3.891 3 C -0.177 4.177 4 C -0.214 4.214 5 C -0.190 4.190 6 C -0.099 4.099 7 N -0.248 5.248 8 C -0.065 4.065 9 C -0.180 4.180 10 C -0.131 4.131 11 C -0.014 4.014 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.183 1.183 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.118 4.118 21 C -0.013 4.013 22 O -0.310 6.310 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.138 0.862 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.113 0.887 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.003 0.997 40 H 0.003 0.997 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.044 0.956 44 H 0.090 0.910 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.035 8.211 12.432 23.393 hybrid contribution 1.884 -0.581 -0.987 2.205 sum -16.150 7.630 11.445 21.214 Atomic orbital electron populations 1.22150 0.93453 1.02943 1.02689 1.20942 0.94247 0.89996 0.83876 1.22298 1.05842 0.93466 0.96138 1.22863 0.93069 1.03245 1.02252 1.22946 0.97326 0.99424 0.99349 1.22753 0.98019 0.89602 0.99490 1.62587 1.58015 1.01867 1.02340 1.22223 0.91890 0.99730 0.92651 1.22122 0.98241 0.99742 0.97913 1.21354 0.95878 0.99316 0.96575 1.19024 0.92791 0.94558 0.95022 1.21766 0.92972 1.33728 1.09721 0.91985 1.26060 0.96959 0.96524 1.00599 1.70121 1.01884 1.45360 1.40258 0.85350 0.78500 0.78227 0.78684 1.18350 1.20281 1.20290 1.22892 0.97848 0.99931 0.91161 1.22769 1.00358 0.81011 0.97160 1.87972 1.76077 1.23837 1.43113 0.91443 0.91813 0.91055 0.86215 0.89330 0.88586 0.87284 0.88699 0.95624 0.89287 0.89676 0.89845 0.93460 0.93631 0.92762 0.92767 0.99718 0.99738 0.92770 0.88424 0.95617 0.91045 0.87246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.01 71.98 0.58 -2.24 16 2 C 0.15 3.25 0.91 -10.76 -0.01 3.24 16 3 C -0.16 -3.20 5.15 -10.80 -0.06 -3.25 16 4 C -0.18 -3.68 9.88 30.62 0.30 -3.38 16 5 C -0.15 -2.59 9.68 30.62 0.30 -2.29 16 6 C 0.03 0.75 3.81 86.31 0.33 1.08 16 7 N -0.53 -12.92 4.31 -895.19 -3.85 -16.78 16 8 C 0.06 1.69 5.38 86.31 0.46 2.15 16 9 C -0.14 -4.92 4.50 30.60 0.14 -4.78 16 10 C -0.09 -3.89 5.15 30.60 0.16 -3.73 16 11 C 0.02 1.28 4.97 29.85 0.15 1.42 16 12 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 13 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 14 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 15 N -0.94 -58.56 13.29 21.45 0.28 -58.27 16 16 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 C 0.01 0.23 5.33 86.32 0.46 0.69 16 21 C 0.06 1.28 6.61 72.02 0.48 1.76 16 22 O -0.39 -9.39 8.64 -148.98 -1.29 -10.68 16 23 H 0.07 1.28 6.12 -2.39 -0.01 1.26 16 24 H 0.06 1.06 7.29 -2.38 -0.02 1.04 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.12 2.23 8.11 -2.39 -0.02 2.22 16 27 H 0.09 2.13 7.06 -2.39 -0.02 2.11 16 28 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.61 7.61 -2.39 -0.02 1.59 16 31 H 0.03 0.78 6.40 -2.39 -0.02 0.77 16 32 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.08 2.13 8.11 -2.38 -0.02 2.11 16 34 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.05 1.74 6.42 -2.39 -0.02 1.73 16 36 H 0.04 1.67 6.61 -2.39 -0.02 1.66 16 37 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.10 1.99 8.12 -2.39 -0.02 1.97 16 43 H 0.03 0.73 6.59 -2.39 -0.02 0.71 16 44 H 0.07 1.27 6.49 -2.39 -0.02 1.25 16 45 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -66.58 343.47 2.08 -64.50 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.93 Total: 14.97 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 3.98 Total: -40.75 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -3.57 Total: -75.05 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.29 Total: -10.68 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.58 2.08 -64.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694902641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.372 kcal (2) G-P(sol) polarization free energy of solvation -66.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds